ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart55h12 |
|---|---|
| Clone Library Name | barley_pub |
>CAX1C_ORYSA (Q5KTQ9) Vacuolar cation/proton exchanger 1c (Ca(2+)/H(+) exchanger| 1c) (OsCAX1c) Length = 450 Score = 35.4 bits (80), Expect = 0.078 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Frame = -2 Query: 477 SNATHIPSFFVSFIGLPLATNSSEAVSAIIFASRKKQRTCSLTFSEVYGGVTMNNTLCLG 298 S + IP F+S I LP+ N++E AIIFA + K ++ G T + L + Sbjct: 320 SESMGIPVRFISIILLPIVGNAAEHAGAIIFAFKNK---IDISLGITLGSATQISMLVVP 376 Query: 297 VFLALIYFRELTWDFSSEVLVI--LLACVIMGLFT 199 V L + + + D +L L VI FT Sbjct: 377 VILIVSWVNAIPMDLDFNLLETGSLAMAVITTAFT 411
>NUOM_BUCBP (Q89AT5) NADH-quinone oxidoreductase chain M (EC 1.6.99.5) (NADH| dehydrogenase I, chain M) (NDH-1, chain M) Length = 508 Score = 33.1 bits (74), Expect = 0.39 Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Frame = -2 Query: 348 FSEVYGGVTMNNTLCLGVFLALIYFRELTWDFS----SEVLVILLACVIMGLFTSFRTSF 181 +S++ G V + +TL L V+ IY LT+D+ + + ++L +C+++G F +F Sbjct: 180 YSQISGLVLLLSTLVL-VYTHYIYDHILTFDYDVLKHTSMNIVLESCIMLGFFLAFAIKI 238 Query: 180 PL 175 P+ Sbjct: 239 PI 240
>HUT1_DEBHA (Q6BMV3) UDP-galactose transporter homolog 1| Length = 354 Score = 33.1 bits (74), Expect = 0.39 Identities = 29/102 (28%), Positives = 48/102 (47%) Frame = -2 Query: 462 IPSFFVSFIGLPLATNSSEAVSAIIFASRKKQRTCSLTFSEVYGGVTMNNTLCLGVFLAL 283 I +FF S +GL + SS + IF +K S V +T + + LG + +L Sbjct: 59 IQAFFASIVGLIYSVVSSRSNPLSIFTQNEKPVALKFFKSFVIISLTSSLSSPLG-YESL 117 Query: 282 IYFRELTWDFSSEVLVILLACVIMGLFTSFRTSFPLWTCLVA 157 + L + + +I V++ F +RT FPL+ C+VA Sbjct: 118 KHVDYLAYLLAKSCKLIP---VMLVHFVLYRTKFPLYKCMVA 156
>PNS1_YEAST (Q12412) Protein PNS1 (pH nine sensitive protein 1)| Length = 539 Score = 33.1 bits (74), Expect = 0.39 Identities = 27/87 (31%), Positives = 46/87 (52%) Frame = -2 Query: 453 FFVSFIGLPLATNSSEAVSAIIFASRKKQRTCSLTFSEVYGGVTMNNTLCLGVFLALIYF 274 FFVSF+G +A+ SA+I A+ K S G + +++ +GV L +++F Sbjct: 228 FFVSFVGALVASAFGFLFSAVIVATYIKYDPNSSNGGCDVSGGSCSHSKLIGV-LVVVFF 286 Query: 273 RELTWDFSSEVLVILLACVIMGLFTSF 193 + SEV+ ++ CVI G+F S+ Sbjct: 287 ---CGYYISEVIRNVIHCVISGVFGSW 310
>S19A2_HUMAN (O60779) Thiamine transporter 1 (ThTr-1) (ThTr1) (Thiamine carrier| 1) (TC1) (Solute carrier family 19 member 2) Length = 497 Score = 32.7 bits (73), Expect = 0.51 Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 1/115 (0%) Frame = -2 Query: 348 FSEVY-GGVTMNNTLCLGVFLALIYFRELTWDFSSEVLVILLACVIMGLFTSFRTSFPLW 172 ++ +Y GGV +TL V + + + +++W E+ + L + +I T +W Sbjct: 328 YAAIYNGGVEAVSTLLGAVAVFAVGYIKISWSTWGEMTLSLFSLLIAAAVYIMDTVGNIW 387 Query: 171 TCLVAYLLYPLTLAIVYVLDFVFGWS*ARASSLDTRLSLIFDSL*FICLEFEVFV 7 C +Y+++ I+Y+L A+ R +L+F FI L + + Sbjct: 388 VCYASYVVF----RIIYMLLITIATFQIAANLSMERYALVFGVNTFIALALQTLL 438
>CAX3_ORYSA (Q6K1C4) Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger| 3) (OsCAX3) Length = 417 Score = 32.7 bits (73), Expect = 0.51 Identities = 15/36 (41%), Positives = 25/36 (69%) Frame = -2 Query: 477 SNATHIPSFFVSFIGLPLATNSSEAVSAIIFASRKK 370 S++ ++P F+S I LP+ N++E SAI+FA + K Sbjct: 290 SDSLNLPVAFISVILLPIVGNAAEHASAIMFAMKDK 325
>CAX2_ORYSA (Q5KQN0) Vacuolar cation/proton exchanger 2 (Ca(2+)/H(+) exchanger| 2) (OsCAX2) Length = 437 Score = 32.0 bits (71), Expect = 0.87 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = -2 Query: 477 SNATHIPSFFVSFIGLPLATNSSEAVSAIIFASRKK 370 S + ++P F+S I LP+ N++E SAI+FA + K Sbjct: 309 SESLNMPVAFISVILLPIVGNAAEHASAIMFAMKDK 344
>CAX1A_ORYSA (Q769E5) Vacuolar cation/proton exchanger 1a (Ca(2+)/H(+) exchanger| 1a) (OsCAX1a) Length = 451 Score = 32.0 bits (71), Expect = 0.87 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Frame = -2 Query: 450 FVSFIGLPLATNSSEAVSAIIFASRKKQRTCSLTFSEVYGGVTMNN--TLCLGVFLALIY 277 F+S I LP+ N++E AIIFA + K +T G T + + L V +A I Sbjct: 315 FISIILLPIVGNAAEHAGAIIFALKNK---LDITLGVALGSATQISMFVVPLSVLVAWIM 371 Query: 276 FRELTWDFSSEVLVILLACVIMGLFT 199 ++ DF L V++ FT Sbjct: 372 GVQMDLDFKLLETGSLFMAVLVTAFT 397
>MDN1_HUMAN (Q9NU22) Midasin (MIDAS-containing protein)| Length = 5596 Score = 31.2 bits (69), Expect = 1.5 Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 4/78 (5%) Frame = +1 Query: 175 EREAGPEACEEAHDDTGEQDDEHLRRE---VPRQLPEVDERQEHAQT-QRVVHGHATVYL 342 ++EA E E D G Q E RE Q+PE ER+EHA Q V Sbjct: 4987 DKEADEEGGENGPADQGFQPQEEEEREDSDTEEQVPEALERKEHASCGQTGVENMQNTQA 5046 Query: 343 *ESEGASPLLLPAGEDDG 396 E GA+P E+ G Sbjct: 5047 MELAGAAPEKEQGKEEHG 5064
>SPT7_YEAST (P35177) Transcriptional activator SPT7| Length = 1332 Score = 31.2 bits (69), Expect = 1.5 Identities = 24/82 (29%), Positives = 35/82 (42%) Frame = +1 Query: 49 KNQTQACVQTRSTSL*PTEDEVEDVNDXXXXXXXXXXHQTGPEREAGPEACEEAHDDTGE 228 KN+ Q V+ S TED +D + +T +EAG E EE DD E Sbjct: 655 KNEEQDMVEESSK----TEDSSKDADAAKKDTEDGLQDKTAENKEAG-ENNEEEEDDDDE 709 Query: 229 QDDEHLRREVPRQLPEVDERQE 294 +DE + L + D+R + Sbjct: 710 DEDEDMVDSQSYLLEKDDDRDD 731
>ELTD1_MOUSE (Q923X1) EGF, latrophilin seven transmembrane domain-containing| protein 1 precursor Length = 739 Score = 31.2 bits (69), Expect = 1.5 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%) Frame = -2 Query: 348 FSEVYGG-VTMNNTLCLGVFLALIYFRELTWDFSSEVLVILLAC-VIMGLFTSFRTSFPL 175 FSE+ T++ LC +FLA EL + + L C +I GL F + Sbjct: 501 FSEIQSTRTTIHKNLCCSLFLA-----ELVFLIGININTNKLVCSIIAGLLHYFFLAAFA 555 Query: 174 WTCLVAYLLYPLTLAIVYVLDFV 106 W C+ LY + + ++Y F+ Sbjct: 556 WMCIEGIHLYLIVVGVIYNKGFL 578
>ELTD1_RAT (Q9ESC1) EGF, latrophilin and seven transmembrane domain-containing| protein 1 precursor (EGF-TM7-latrophilin-related protein) (ETL protein) Length = 738 Score = 30.4 bits (67), Expect = 2.5 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Frame = -2 Query: 348 FSEVYGG-VTMNNTLCLGVFLALIYFRELTWDFSSEVLVILLACVIMGLFTSFRTSFPLW 172 FSE+ T++ LC +FLA + F + + ++ LV +I GL F + W Sbjct: 500 FSEIQSTRTTIHKNLCCSLFLAQLVFL-VGININTNKLV---CSIIAGLLHYFFLAAFAW 555 Query: 171 TCLVAYLLYPLTLAIVYVLDFV 106 C+ LY + + ++Y F+ Sbjct: 556 MCIEGIYLYLIVVGLIYNKGFL 577
>ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein| Length = 612 Score = 30.4 bits (67), Expect = 2.5 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%) Frame = -3 Query: 449 LSRSSACLWQP-IPARLSQPSSSPAGRS 369 +SR++A W+P P +PSSSP+GR+ Sbjct: 202 VSRATAAFWEPQCPTYSEEPSSSPSGRA 229
>IF2_AQUAE (O67825) Translation initiation factor IF-2| Length = 805 Score = 30.4 bits (67), Expect = 2.5 Identities = 18/48 (37%), Positives = 23/48 (47%) Frame = +1 Query: 172 PEREAGPEACEEAHDDTGEQDDEHLRREVPRQLPEVDERQEHAQTQRV 315 P G E EA D+ DDE RE+ + E ER+E QT R+ Sbjct: 543 PVEVLGFEELPEAGDELIVVDDERTAREIAEKRKEKKEREEKLQTIRL 590
>OPT8_ARATH (Q9FJD1) Probable oligopeptide transporter 8 (AtOPT8)| Length = 733 Score = 30.4 bits (67), Expect = 2.5 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 5/119 (4%) Frame = -2 Query: 465 HIPSFFVSFIGLPLATNSSEAVSAIIFASRKKQRTCSLTFSEVYGGVTMNNTLCLGVFLA 286 H+ +FF GL AT S+ +IF + +++ G N + + + Sbjct: 352 HMSTFFAVTYGLGFATLSASIFHVLIFNGKD-------LWTQTRGAFGKNKKMDIHTKIM 404 Query: 285 LIYFREL-TWDFSSEVLVILLACVIMGLFTSFRTSFPLW----TCLVAYLLYPLTLAIV 124 ++E+ W F S V L V + ++ + P W CL+A PL I+ Sbjct: 405 KRNYKEVPLWWFLSIFAVNLAVIVFICIYYKTQIQLPWWGAFLACLIAIFFTPLVGVIM 463
>NRAM1_CANFA (Q9XT74) Natural resistance-associated macrophage protein 1 (NRAMP| 1) Length = 547 Score = 30.0 bits (66), Expect = 3.3 Identities = 26/103 (25%), Positives = 45/103 (43%) Frame = -2 Query: 462 IPSFFVSFIGLPLATNSSEAVSAIIFASRKKQRTCSLTFSEVYGGVTMNNTLCLGVFLAL 283 + S + F LP+ T +S FA+ + S+ M + ++ + Sbjct: 431 LQSLLLPFAVLPILTFTSMPALMQEFANGR--------LSKAITSFIMALVCAINLYFVV 482 Query: 282 IYFRELTWDFSSEVLVILLACVIMGLFTSFRTSFPLWTCLVAY 154 IY L + +LV LLA V +GL T++ +WTC +A+ Sbjct: 483 IYLPSLPHP-AYFILVALLAIVYLGL-----TTYLVWTCFIAH 519
>FGD1_HUMAN (P98174) FYVE, RhoGEF and PH domain-containing protein 1| (Faciogenital dysplasia 1 protein) (Zinc finger FYVE domain-containing protein 3) (Rho/Rac guanine nucleotide exchange factor FGD1) (Rho/Rac GEF) Length = 961 Score = 30.0 bits (66), Expect = 3.3 Identities = 15/50 (30%), Positives = 23/50 (46%) Frame = +1 Query: 172 PEREAGPEACEEAHDDTGEQDDEHLRREVPRQLPEVDERQEHAQTQRVVH 321 P R E + ++ E+++E RE+P L E E E Q+V H Sbjct: 327 PHRPGSQEVDSDLEEEDDEEEEEEKDREIPVPLMERQESVELTVQQKVFH 376
>S19A3_MOUSE (Q99PL8) Thiamine transporter 2 (ThTr-2) (ThTr2) (Solute carrier| family 19 member 3) Length = 488 Score = 30.0 bits (66), Expect = 3.3 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 6/85 (7%) Frame = -2 Query: 276 FRELTWDFSSEVLVILLACVIMGLFTSFRTSFPLWTCLVAYLL------YPLTLAIVYVL 115 + ++ WD E+ + + + VI G S +W C YLL + +T+A+ + Sbjct: 330 YLKVNWDLLGELGLAVFSAVIAGSLFLMNYSRSIWVCYAGYLLVKSSYSFLITIAVFQIA 389 Query: 114 DFVFGWS*ARASSLDTRLSLIFDSL 40 + A +DT ++L+ ++ Sbjct: 390 VNLSLERYALVFGIDTFIALVIQTI 414
>CAX1B_ORYSA (Q5TKG3) Vacuolar cation/proton exchanger 1b (Ca(2+)/H(+) exchanger| 1b) (OsCAX1b) Length = 453 Score = 29.6 bits (65), Expect = 4.3 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 2/114 (1%) Frame = -2 Query: 450 FVSFIGLPLATNSSEAVSAIIFASRKKQRTCSLTFSEVYGGVTMNNTLCLGVFLALIYFR 271 F+S I LP+ N++E A+IFA + K +T G T + + V + + + Sbjct: 325 FISIILLPIVGNAAEHAGAVIFALKNKM---DITLGVSLGSATQISMFVVPVSVIVAWTM 381 Query: 270 ELTWDFSSEVLVI--LLACVIMGLFTSFRTSFPLWTCLVAYLLYPLTLAIVYVL 115 + D +L L +++ FT L+ L Y + +V+ Sbjct: 382 GIPMDLDFNLLETGSLFLAILVTAFTLQEGESHYLKGLILVLCYAVISVCFFVI 435
>GCY31_CAEEL (Q86C56) Soluble guanylate cyclase gcy-31 (EC 4.6.1.2)| Length = 702 Score = 29.6 bits (65), Expect = 4.3 Identities = 15/54 (27%), Positives = 24/54 (44%) Frame = +1 Query: 106 DEVEDVNDXXXXXXXXXXHQTGPEREAGPEACEEAHDDTGEQDDEHLRREVPRQ 267 +E+E + D + GP R P CE DD+ +DD+ +PR+ Sbjct: 596 EEIE-IKDDQTIQTFFVVSRHGPHRVPSPRNCESRQDDSQTEDDDDDELLLPRK 648
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 29.6 bits (65), Expect = 4.3 Identities = 18/59 (30%), Positives = 24/59 (40%) Frame = +1 Query: 217 DTGEQDDEHLRREVPRQLPEVDERQEHAQTQRVVHGHATVYL*ESEGASPLLLPAGEDD 393 + GE DDE+ +P Q H Q +V SE A P+ L A +DD Sbjct: 179 EDGESDDEY------EDIPSRTHNQSHTADQEMVDAPLAASAEPSESAPPVSLDATDDD 231
>CAX4_ORYSA (Q6YXZ1) Putative vacuolar cation/proton exchanger 4 (Ca(2+)/H(+)| exchanger 4) (OsCAX4) Length = 447 Score = 29.6 bits (65), Expect = 4.3 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = -2 Query: 477 SNATHIPSFFVSFIGLPLATNSSEAVSAIIFASRKK 370 S A +IP F+S + LP+ NS+ +A++FA + K Sbjct: 314 SKAWNIPVAFISVVLLPVVGNSAGHANAVMFAVKDK 349
>VME1_CVTKE (P26021) E1 glycoprotein (Matrix glycoprotein) (Membrane| glycoprotein) Length = 230 Score = 29.6 bits (65), Expect = 4.3 Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 5/58 (8%) Frame = -2 Query: 261 WDFSSEVLVILLACVIMGLFTSFRTSFPLWTCLVAYLLYPLTLAI-----VYVLDFVF 103 W+FS ++++ + ++ +TS S + ++ +L++PLT+ + VY L+ V+ Sbjct: 25 WNFSLGIILLFITIILQFGYTSRSMSVYVIKMIILWLMWPLTIILTIFNCVYALNNVY 82
>ELTD1_HUMAN (Q9HBW9) EGF, latrophilin and seven transmembrane domain-containing| protein 1 precursor (EGF-TM7-latrophilin-related protein) (ETL protein) Length = 690 Score = 29.6 bits (65), Expect = 4.3 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Frame = -2 Query: 348 FSEVYGG-VTMNNTLCLGVFLA-LIYFRELTWDFSSEVLVILLACVIMGLFTSFRTSFPL 175 FSE+ T++ LC +FLA L++ + + + L +I GL F + Sbjct: 452 FSEIQSTRTTIHKNLCCSLFLAELVFLVGINTNTNK-----LFCSIIAGLLHYFFLAAFA 506 Query: 174 WTCLVAYLLYPLTLAIVYVLDFV 106 W C+ LY + + ++Y F+ Sbjct: 507 WMCIEGIHLYLIVVGVIYNKGFL 529
>SACB_STRSL (Q55242) Levansucrase precursor (EC 2.4.1.10)| (Beta-D-fructofuranosyl transferase) (Sucrose 6-fructosyl transferase) Length = 969 Score = 29.3 bits (64), Expect = 5.6 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Frame = +2 Query: 83 ARAYDQPKTKSRT*TMARVRGYSRYATRQVQSGKLVRKLVKRPMM-TQASRMT-STSEEK 256 A A P+T + + T+A S + V+S ++ +P+ TQ S T S EEK Sbjct: 63 ATATATPETSTASLTVASETATSVATSEAVESSVAHSEVATKPVTETQPSNTTPSVVEEK 122 Query: 257 SHVSSLK*MSAKNTPRHSVLFMVTPPYTSEKVRE 358 + + + S TP +V + P +TSE E Sbjct: 123 ASSTVVTSSSDATTPSATVAAVSAPAHTSEAAVE 156
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 28.9 bits (63), Expect = 7.3 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Frame = -2 Query: 240 LVILLACVIMGLFTSFRTSFPLWTCLVAYL---LYPLTLAIVYVLDFVFGWS*ARASSLD 70 +VI+L +I+G+F +RT+ P+ +L + + A ++LD W + Sbjct: 263 IVIVLRLIILGVFLHYRTTHPVKDAYALWLTSVICEIWFAFSWLLDQFPKWYPINRETFL 322 Query: 69 TRLSLIFD 46 RL+L +D Sbjct: 323 DRLALRYD 330
>PNS1_CANGA (Q6FLC9) Protein PNS1| Length = 557 Score = 28.9 bits (63), Expect = 7.3 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 6/107 (5%) Frame = -2 Query: 456 SFFVSFIGLPLATNSSEAVSAIIFASRKKQRTCSLTFSEVYGGVTMNNTLCLGVFLALIY 277 S FVSF G +A+ + S ++ A+ K + G ++ +GV L +++ Sbjct: 245 SLFVSFFGTIVASAFAMLFSTVVVATYMKYDPSNTNSGCNVSGGDCSHAKLIGV-LVVVF 303 Query: 276 FRELTWDFSSEVLVILLACVIMGLFTSFRTSF------PLWTCLVAY 154 F + SEV+ ++ C + G+F S+ + P W + A+ Sbjct: 304 F---CGYYISEVIRNVMHCTVSGVFGSWYYRYKSDQGMPKWPAMGAF 347
>AMIE_BACST (Q9RQ17) Aliphatic amidase (EC 3.5.1.4) (Acylamide amidohydrolase)| (Wide spectrum amidase) Length = 348 Score = 28.9 bits (63), Expect = 7.3 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%) Frame = +1 Query: 169 GPEREAGPEACEEAH-----DDTGEQDDEHLRREVPRQLPEVDERQEHAQTQRVV 318 GPE E EAC +A+ TGEQ +EH + L ++ + E Q R + Sbjct: 81 GPETEIFAEACRKANTWGVFSLTGEQHEEHPHKNPYNTLVLINNKGEIVQKYRKI 135
>LGT_CAUCR (Q9AAV1) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 302 Score = 28.9 bits (63), Expect = 7.3 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -1 Query: 241 ARHPARLCHHGPLHKLPDQLPALDLSG 161 A HP R+C GPL + P QL L G Sbjct: 185 ANHPQRICPAGPLPRHPSQLYEAALEG 211
>HDA1B_XENLA (O42227) Probable histone deacetylase 1-B (HD1) (RPD3 homolog)| Length = 480 Score = 28.9 bits (63), Expect = 7.3 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = +1 Query: 100 TEDEVEDVNDXXXXXXXXXXHQTGPEREAGPEACEEAHDDTGEQDDE 240 T + +E + H G + +A PE + HDD+GE+D+E Sbjct: 355 TNEYLEKIKQRLFENLRMLPHAPGVQMQAIPE--DSVHDDSGEEDEE 399
>ESCO1_HUMAN (Q5FWF5) N-acetyltransferase ESCO1 (EC 2.3.1.-) (Establishment of| cohesion 1 homolog 1) (ECO1 homolog 1) (ESO1 homolog 1) (Establishment factor-like protein 1) (EFO1p) (hEFO1) (CTF7 homolog 1) Length = 840 Score = 28.5 bits (62), Expect = 9.6 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 12/94 (12%) Frame = +2 Query: 8 TNTSNSRQINYNESKIKLKRVSRLEARAYDQPKTKSRT*TMARVRGYSRYATRQVQSGK- 184 + +S + N+ +++ + +R A + TKS VRGYS+ +T++ S K Sbjct: 47 SQAKSSSESKINQPELETRMSTRSSKAASNDKATKSINKNTVTVRGYSQESTKKKLSQKK 106 Query: 185 -----------LVRKLVKRPMMTQASRMTSTSEE 253 L R+ + +T+ SR + S E Sbjct: 107 LVHENPKANEQLNRRSQRLQQLTEVSRRSLRSRE 140
>HRCQB_PSESM (Q9F0H3) Type III secretion protein hrcQb| Length = 137 Score = 28.5 bits (62), Expect = 9.6 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +1 Query: 193 EACEEAHDDTGEQDDEHLRREVPRQLPEVDERQEHAQTQ 309 E+ E+ D+T EQ+ EH E +Q E D+ E+A+ + Sbjct: 12 ESLEDYDDETAEQEHEH---EHEQQWAEPDDESEYAEAE 47
>GNRP_RAT (P28818) Guanine nucleotide-releasing protein (GNRP) (P140 Ras-GRF)| Length = 1244 Score = 28.5 bits (62), Expect = 9.6 Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 3/147 (2%) Frame = +2 Query: 5 TTNTSNSRQINYNESKIKLKRVSRLEARAYDQPKTKSRT*TMARVRGYSRYATRQVQSGK 184 T N+ QI Y + L+R++ L + D T + Y + V K Sbjct: 624 TMNSCKVLQIRYASVERLLERLTDLRFLSIDFLNTF--------LHSYRVFTDAVVVLDK 675 Query: 185 LVRKLVKRPMMTQASRMTSTSEEKSHVSSLK*MSAKNTPRHSVLFMVTPPY---TSEKVR 355 L+ + K+P+ +R SH + L A +PR S F PP TS VR Sbjct: 676 LI-SIYKKPITAIPARSLELLFSSSHNTKLLYGDAPKSPRASRKFSSPPPLAIGTSSPVR 734 Query: 356 EQVLCFFLLAKMMAETASLELVARGRP 436 + L L ++ +LEL + G P Sbjct: 735 RRKLS--LNIPIITGGKALELASLGCP 759
>DOK3_MOUSE (Q9QZK7) Docking protein 3 (Downstream of tyrosine kinase 3)| (P62(dok)-like protein) (DOK-L) Length = 444 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -3 Query: 455 PSLSRSSACLWQPIPARLSQPSSSPAGRSRGLAP 354 P L+ S C P+P LS PS P G R +AP Sbjct: 259 PELAMSPPC---PLPRALSLPSLEPPGELREVAP 289
>U5S1_MOUSE (O08810) 116 kDa U5 small nuclear ribonucleoprotein component (U5| snRNP-specific protein, 116 kDa) (U5-116 kDa) (Elongation factor Tu GTP-binding domain protein 2) Length = 971 Score = 28.5 bits (62), Expect = 9.6 Identities = 20/72 (27%), Positives = 32/72 (44%) Frame = +1 Query: 163 QTGPEREAGPEACEEAHDDTGEQDDEHLRREVPRQLPEVDERQEHAQTQRVVHGHATVYL 342 + G E + E +E DD GE +D+H EV + E +++ T V+G + Sbjct: 25 ELGRETKDLDEDEDEDEDDVGEHEDDHPGMEV-----VLHEDKKYYPTAEEVYGPEVETI 79 Query: 343 *ESEGASPLLLP 378 + E PL P Sbjct: 80 VQEEDTQPLTEP 91
>UL34_HCMVA (P16812) Hypothetical protein UL34| Length = 407 Score = 28.5 bits (62), Expect = 9.6 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +1 Query: 184 AGPEACEEAHDDTGEQDDEHLRREVPRQLPE 276 AGP +E +D+ GE+DD+ LR P L E Sbjct: 269 AGPPEADENNDE-GEEDDDELRHSDPAPLHE 298
>LGT_MYCPE (Q8EWA4) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 356 Score = 28.5 bits (62), Expect = 9.6 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Frame = -2 Query: 459 PSFFVSFIGLPLATNSSEAVSAIIFASRKK---QRTCSLTFSEVYGGVTMNNTLCLGVFL 289 P ++ FIG+P++ + S II + K Q + F+ GG+ + + L V Sbjct: 56 PFYWFVFIGIPVSLLGARIWSFIIGDASKSLATQNFFAAFFNFREGGLAIEGGVLLTVIA 115 Query: 288 ALIYF 274 ALIYF Sbjct: 116 ALIYF 120
>SSB1_TROWT (Q83N34) Single-stranded DNA-binding protein 1 (SSB 1)| (Helix-destabilizing protein 1) Length = 186 Score = 28.5 bits (62), Expect = 9.6 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -1 Query: 385 RQQEEAEDLLPHFLRGIRWRDHEQHAVSGRVLGAHLL 275 RQ E +D P FLRGI WR++ +A + G ++ Sbjct: 40 RQSGEWKDGEPLFLRGILWREYAINAAASLAKGMRVV 76
>SSB1_TROW8 (Q83NU2) Single-stranded DNA-binding protein 1 (SSB 1)| (Helix-destabilizing protein 1) Length = 186 Score = 28.5 bits (62), Expect = 9.6 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -1 Query: 385 RQQEEAEDLLPHFLRGIRWRDHEQHAVSGRVLGAHLL 275 RQ E +D P FLRGI WR++ +A + G ++ Sbjct: 40 RQSGEWKDGEPLFLRGILWREYAINAAASLAKGMRVV 76 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,419,138 Number of Sequences: 219361 Number of extensions: 1378299 Number of successful extensions: 5821 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 5423 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5802 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
