ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY108872.1| Zea mays PCO108167 mRNA sequence 343 3e-91
2ref|NM_188414.1| Oryza sativa (japonica cultivar-group), Ozsa814... 337 2e-89
3dbj|AK066468.1| Oryza sativa (japonica cultivar-group) cDNA clon... 337 2e-89
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 250 4e-63
5dbj|AP002092.1| Oryza sativa (japonica cultivar-group) genomic D... 250 4e-63
6ref|XM_464813.1| Oryza sativa (japonica cultivar-group), mRNA 100 8e-18
7dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
9dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
10dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
11ref|XM_363303.1| Magnaporthe grisea 70-15 hypothetical protein (... 48 0.027
12gb|AC166937.2| Mus musculus BAC clone RP24-121A12 from chromosom... 48 0.027
13dbj|AK220271.1| Mus musculus premature mRNA for mKIAA1814 protein 48 0.027
14gb|AC152413.5| Mus musculus BAC clone RP23-431A21 from chromosom... 48 0.027
15gb|AC005368.1| Homo sapiens chromosome 5, BAC clone 194j18 (LBNL... 42 1.6
16gb|AC008781.7| Homo sapiens chromosome 5 clone CTD-2024I7, compl... 42 1.6
17ref|NM_122383.2| Arabidopsis thaliana unknown protein AT5G24740 ... 40 6.5
18ref|XM_483110.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.5
19gb|BC081611.1| Danio rerio zgc:92159, mRNA (cDNA clone MGC:92159... 40 6.5
20gb|U41553.1| Caenorhabditis elegans cosmid ZK1193, complete sequ... 40 6.5
21emb|AL392145.1|ATT4C12 Arabidopsis thaliana DNA chromosome 5, BA... 40 6.5
22ref|NM_001004590.1| Danio rerio zgc:92159 (zgc:92159), mRNA 40 6.5
23gb|AY119124.1| Drosophila melanogaster RE27864 full insert cDNA 40 6.5
24ref|NM_206141.1| Drosophila melanogaster CG33456-PA (CG33456) mR... 40 6.5
25gb|AC025538.6| Homo sapiens BAC clone RP11-274J2 from 4, complet... 40 6.5
26gb|AC099030.1| Drosophila melanogaster, chromosome 2R, region 53... 40 6.5
27emb|BX248230.21| Zebrafish DNA sequence from clone CH211-213O11 ... 40 6.5
28dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
29dbj|AB013392.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.5
30dbj|AP004762.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
31gb|AC154822.2| Mus musculus BAC clone RP24-537L18 from 13, compl... 40 6.5
32dbj|AK065316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
33gb|AE003805.3| Drosophila melanogaster chromosome 2R, section 45... 40 6.5
34gb|AC004641.1|AC004641 Drosophila melanogaster DNA sequence (P1s... 40 6.5
35dbj|D83997.1| Capparis masaikai mRNA for mabinlin, complete cds 40 6.5 
>gb|AY108872.1| Zea mays PCO108167 mRNA sequence
          Length = 805

 Score =  343 bits (173), Expect = 3e-91
 Identities = 332/385 (86%)
 Strand = Plus / Minus

                                                                       
Query: 87  gagcctatgaccaaccgaagacgaagtcgaggacgtaaacgatggccagggtcagagggt 146
           ||||||||||||| || |||||| ||||||||| ||| |||| | |||| |  |  ||||
Sbjct: 565 gagcctatgaccagccaaagacgtagtcgaggatgtagacgaggaccagcgagaacgggt 506

                                                                       
Query: 147 acagcaggtacgccaccagacaggtccagagcgggaagctggtccggaagcttgtgaaga 206
           | |||| ||| || || || |||||||||||||||||  ||||||||||||| |||||||
Sbjct: 505 agagcatgtaggcgacgaggcaggtccagagcgggaacgtggtccggaagctggtgaaga 446

                                                                       
Query: 207 ggcccatgatgacacaggcgagcaggatgacgagcacctccgaagagaagtcccacgtca 266
           || |||||| ||| ||| |||||||||||| |||||||||||| ||||||||||| ||||
Sbjct: 445 gggccatgacgacgcagacgagcaggatgatgagcacctccgacgagaagtcccatgtca 386

                                                                       
Query: 267 gctccctgaagtagatgagcgccaagaacacgcccagacacagcgtgttgttcatggtca 326
           | | |||||||||||||||||||| ||||||||| || ||||||||||||||||| ||||
Sbjct: 385 ggttcctgaagtagatgagcgccaggaacacgccgaggcacagcgtgttgttcatcgtca 326

                                                                       
Query: 327 cgccaccgtatacctctgagaaagtgagggagcaagtcctctgcttcttcctgctggcga 386
           |||| || || ||||| ||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct: 325 cgccgccatacacctcggagaatgtgagggagcaggtccgctgcttcttcctgctggcga 266

                                                                       
Query: 387 agatgatggctgagacagcctcgctggaattggttgccagaggcaggccgatgaacgaga 446
           |||||||||| ||||| ||||||||||| ||||| || || || ||| ||||||| ||||
Sbjct: 265 agatgatggcggagacggcctcgctggagttggtcgcgagcggaagggcgatgaaggaga 206

                                    
Query: 447 caaagaaggacgggatgtgtgtggc 471
             ||||||||||||||||| |||||
Sbjct: 205 tgaagaaggacgggatgtgcgtggc 181
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>ref|NM_188414.1| Oryza sativa (japonica cultivar-group), Ozsa8140 predicted mRNA
          Length = 2007

 Score =  337 bits (170), Expect = 2e-89
 Identities = 323/374 (86%)
 Strand = Plus / Minus

                                                                        
Query: 92   tatgaccaaccgaagacgaagtcgaggacgtaaacgatggccagggtcagagggtacagc 151
            |||||||| || |||||||||||||||| ||| ||||   | || |  || ||||| |||
Sbjct: 2006 tatgaccagccaaagacgaagtcgaggatgtagacgacaacgagcgaaagcgggtaaagc 1947

                                                                        
Query: 152  aggtacgccaccagacaggtccagagcgggaagctggtccggaagcttgtgaagaggccc 211
            | ||||||||||||||||||||||||||||||  |||| | ||||||||||||||| |||
Sbjct: 1946 atgtacgccaccagacaggtccagagcgggaatgtggttctgaagcttgtgaagagtccc 1887

                                                                        
Query: 212  atgatgacacaggcgagcaggatgacgagcacctccgaagagaagtcccacgtcagctcc 271
            |||||||||||| ||||||| |||| |||||||||||| ||||||||||| ||||| | |
Sbjct: 1886 atgatgacacagacgagcagtatgatgagcacctccgatgagaagtcccatgtcaggttc 1827

                                                                        
Query: 272  ctgaagtagatgagcgccaagaacacgcccagacacagcgtgttgttcatggtcacgcca 331
            |||| ||||||||||||||||||||||||||  ||||||||||||||||||||||| |||
Sbjct: 1826 ctgatgtagatgagcgccaagaacacgcccaagcacagcgtgttgttcatggtcacacca 1767

                                                                        
Query: 332  ccgtatacctctgagaaagtgagggagcaagtcctctgcttcttcctgctggcgaagatg 391
            || |||||||| |||||||| ||||| |  ||||   ||||||||||||| |||||||||
Sbjct: 1766 ccatatacctcagagaaagtaagggaactggtccgtagcttcttcctgctagcgaagatg 1707

                                                                        
Query: 392  atggctgagacagcctcgctggaattggttgccagaggcaggccgatgaacgagacaaag 451
            ||||| || |||||||||||||| ||||| ||||| || ||| |||||||||| |  |||
Sbjct: 1706 atggcagacacagcctcgctggagttggtcgccagcgggagggcgatgaacgaaatgaag 1647

                          
Query: 452  aaggacgggatgtg 465
            ||||| ||||||||
Sbjct: 1646 aaggatgggatgtg 1633
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>dbj|AK066468.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066B01, full
            insert sequence
          Length = 2023

 Score =  337 bits (170), Expect = 2e-89
 Identities = 323/374 (86%)
 Strand = Plus / Minus

                                                                        
Query: 92   tatgaccaaccgaagacgaagtcgaggacgtaaacgatggccagggtcagagggtacagc 151
            |||||||| || |||||||||||||||| ||| ||||   | || |  || ||||| |||
Sbjct: 1791 tatgaccagccaaagacgaagtcgaggatgtagacgacaacgagcgaaagcgggtaaagc 1732

                                                                        
Query: 152  aggtacgccaccagacaggtccagagcgggaagctggtccggaagcttgtgaagaggccc 211
            | ||||||||||||||||||||||||||||||  |||| | ||||||||||||||| |||
Sbjct: 1731 atgtacgccaccagacaggtccagagcgggaatgtggttctgaagcttgtgaagagtccc 1672

                                                                        
Query: 212  atgatgacacaggcgagcaggatgacgagcacctccgaagagaagtcccacgtcagctcc 271
            |||||||||||| ||||||| |||| |||||||||||| ||||||||||| ||||| | |
Sbjct: 1671 atgatgacacagacgagcagtatgatgagcacctccgatgagaagtcccatgtcaggttc 1612

                                                                        
Query: 272  ctgaagtagatgagcgccaagaacacgcccagacacagcgtgttgttcatggtcacgcca 331
            |||| ||||||||||||||||||||||||||  ||||||||||||||||||||||| |||
Sbjct: 1611 ctgatgtagatgagcgccaagaacacgcccaagcacagcgtgttgttcatggtcacacca 1552

                                                                        
Query: 332  ccgtatacctctgagaaagtgagggagcaagtcctctgcttcttcctgctggcgaagatg 391
            || |||||||| |||||||| ||||| |  ||||   ||||||||||||| |||||||||
Sbjct: 1551 ccatatacctcagagaaagtaagggaactggtccgtagcttcttcctgctagcgaagatg 1492

                                                                        
Query: 392  atggctgagacagcctcgctggaattggttgccagaggcaggccgatgaacgagacaaag 451
            ||||| || |||||||||||||| ||||| ||||| || ||| |||||||||| |  |||
Sbjct: 1491 atggcagacacagcctcgctggagttggtcgccagcgggagggcgatgaacgaaatgaag 1432

                          
Query: 452  aaggacgggatgtg 465
            ||||| ||||||||
Sbjct: 1431 aaggatgggatgtg 1418
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  250 bits (126), Expect = 4e-63
 Identities = 219/250 (87%)
 Strand = Plus / Minus

                                                                           
Query: 92      tatgaccaaccgaagacgaagtcgaggacgtaaacgatggccagggtcagagggtacagc 151
               |||||||| || |||||||||||||||| ||| ||||   | || |  || ||||| |||
Sbjct: 6137904 tatgaccagccaaagacgaagtcgaggatgtagacgacaacgagcgaaagcgggtaaagc 6137845

                                                                           
Query: 152     aggtacgccaccagacaggtccagagcgggaagctggtccggaagcttgtgaagaggccc 211
               | ||||||||||||||||||||||||||||||  |||| | ||||||||||||||| |||
Sbjct: 6137844 atgtacgccaccagacaggtccagagcgggaatgtggttctgaagcttgtgaagagtccc 6137785

                                                                           
Query: 212     atgatgacacaggcgagcaggatgacgagcacctccgaagagaagtcccacgtcagctcc 271
               |||||||||||| ||||||| |||| |||||||||||| ||||||||||| ||||| | |
Sbjct: 6137784 atgatgacacagacgagcagtatgatgagcacctccgatgagaagtcccatgtcaggttc 6137725

                                                                           
Query: 272     ctgaagtagatgagcgccaagaacacgcccagacacagcgtgttgttcatggtcacgcca 331
               |||| ||||||||||||||||||||||||||  ||||||||||||||||||||||| |||
Sbjct: 6137724 ctgatgtagatgagcgccaagaacacgcccaagcacagcgtgttgttcatggtcacacca 6137665

                         
Query: 332     ccgtatacct 341
               || |||||||
Sbjct: 6137664 ccatatacct 6137655



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 85/97 (87%)
 Strand = Plus / Minus

                                                                           
Query: 369     gcttcttcctgctggcgaagatgatggctgagacagcctcgctggaattggttgccagag 428
               ||||||||||||| |||||||||||||| || |||||||||||||| ||||| ||||| |
Sbjct: 6137529 gcttcttcctgctagcgaagatgatggcagacacagcctcgctggagttggtcgccagcg 6137470

                                                    
Query: 429     gcaggccgatgaacgagacaaagaaggacgggatgtg 465
               | ||| |||||||||| |  |||||||| ||||||||
Sbjct: 6137469 ggagggcgatgaacgaaatgaagaaggatgggatgtg 6137433
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>dbj|AP002092.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0031E09
          Length = 176349

 Score =  250 bits (126), Expect = 4e-63
 Identities = 219/250 (87%)
 Strand = Plus / Minus

                                                                          
Query: 92     tatgaccaaccgaagacgaagtcgaggacgtaaacgatggccagggtcagagggtacagc 151
              |||||||| || |||||||||||||||| ||| ||||   | || |  || ||||| |||
Sbjct: 162261 tatgaccagccaaagacgaagtcgaggatgtagacgacaacgagcgaaagcgggtaaagc 162202

                                                                          
Query: 152    aggtacgccaccagacaggtccagagcgggaagctggtccggaagcttgtgaagaggccc 211
              | ||||||||||||||||||||||||||||||  |||| | ||||||||||||||| |||
Sbjct: 162201 atgtacgccaccagacaggtccagagcgggaatgtggttctgaagcttgtgaagagtccc 162142

                                                                          
Query: 212    atgatgacacaggcgagcaggatgacgagcacctccgaagagaagtcccacgtcagctcc 271
              |||||||||||| ||||||| |||| |||||||||||| ||||||||||| ||||| | |
Sbjct: 162141 atgatgacacagacgagcagtatgatgagcacctccgatgagaagtcccatgtcaggttc 162082

                                                                          
Query: 272    ctgaagtagatgagcgccaagaacacgcccagacacagcgtgttgttcatggtcacgcca 331
              |||| ||||||||||||||||||||||||||  ||||||||||||||||||||||| |||
Sbjct: 162081 ctgatgtagatgagcgccaagaacacgcccaagcacagcgtgttgttcatggtcacacca 162022

                        
Query: 332    ccgtatacct 341
              || |||||||
Sbjct: 162021 ccatatacct 162012



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 85/97 (87%)
 Strand = Plus / Minus

                                                                          
Query: 369    gcttcttcctgctggcgaagatgatggctgagacagcctcgctggaattggttgccagag 428
              ||||||||||||| |||||||||||||| || |||||||||||||| ||||| ||||| |
Sbjct: 161886 gcttcttcctgctagcgaagatgatggcagacacagcctcgctggagttggtcgccagcg 161827

                                                   
Query: 429    gcaggccgatgaacgagacaaagaaggacgggatgtg 465
              | ||| |||||||||| |  |||||||| ||||||||
Sbjct: 161826 ggagggcgatgaacgaaatgaagaaggatgggatgtg 161790
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>ref|XM_464813.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1716

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 185/230 (80%)
 Strand = Plus / Minus

                                                                        
Query: 188  gtccggaagcttgtgaagaggcccatgatgacacaggcgagcaggatgacgagcacctcc 247
            ||||||||||| |||||||||||||| ||||  ||  |||| ||||||| ||| ||||||
Sbjct: 1619 gtccggaagctggtgaagaggcccattatgatgcacacgaggaggatgatgagtacctcc 1560

                                                                        
Query: 248  gaagagaagtcccacgtcagctccctgaagtagatgagcgccaagaacacgcccagacac 307
            || ||||| ||||| || |   |||| | ||| |  || |||||||||||| | || || 
Sbjct: 1559 gatgagaaatcccaggttaagcccctcacgtaaacaagggccaagaacacggcgaggcag 1500

                                                                        
Query: 308  agcgtgttgttcatggtcacgccaccgtatacctctgagaaagtgagggagcaagtcctc 367
            || ||||||||||||||||| ||||| || ||||| ||||| || || ||  ||||||  
Sbjct: 1499 agtgtgttgttcatggtcactccaccatagacctcagagaaggttagtgacaaagtccgt 1440

                                                              
Query: 368  tgcttcttcctgctggcgaagatgatggctgagacagcctcgctggaatt 417
            | |||||||| ||| || || || || |||||||||||||||||||||||
Sbjct: 1439 ttcttcttccggctagcaaatataattgctgagacagcctcgctggaatt 1390
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>dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           BAC clone:OSJNBa0038J17
          Length = 180186

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 92  tatgaccaaccgaagacgaagtcgaggacgtaaacgatggccagggtcagagggtacagc 151
           |||||||| || |||||||||||||||| ||| ||||   | || |  || ||||| |||
Sbjct: 102 tatgaccagccaaagacgaagtcgaggatgtagacgacaacgagcgaaagcgggtaaagc 43

                                           
Query: 152 aggtacgccaccagacaggtccagagcgggaa 183
           | ||||||||||||||||||||||||||||||
Sbjct: 42  atgtacgccaccagacaggtccagagcgggaa 11
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 118/146 (80%)
 Strand = Plus / Minus

                                                                           
Query: 188     gtccggaagcttgtgaagaggcccatgatgacacaggcgagcaggatgacgagcacctcc 247
               ||||||||||| |||||||||||||| ||||  ||  |||| ||||||| ||| ||||||
Sbjct: 8361416 gtccggaagctggtgaagaggcccattatgatgcacacgaggaggatgatgagtacctcc 8361357

                                                                           
Query: 248     gaagagaagtcccacgtcagctccctgaagtagatgagcgccaagaacacgcccagacac 307
               || ||||| ||||| || |   |||| | ||| |  || |||||||||||| | || || 
Sbjct: 8361356 gatgagaaatcccaggttaagcccctcacgtaaacaagggccaagaacacggcgaggcag 8361297

                                         
Query: 308     agcgtgttgttcatggtcacgccacc 333
               || ||||||||||||||||| |||||
Sbjct: 8361296 agtgtgttgttcatggtcactccacc 8361271



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                               
Query: 370     cttcttcctgctggcgaagatgatggctgagacagcctcgctggaatt 417
               |||||||| ||| || || || || |||||||||||||||||||||||
Sbjct: 8361023 cttcttccggctagcaaatataattgctgagacagcctcgctggaatt 8360976
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>dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0011N12
          Length = 158586

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 118/146 (80%)
 Strand = Plus / Minus

                                                                         
Query: 188   gtccggaagcttgtgaagaggcccatgatgacacaggcgagcaggatgacgagcacctcc 247
             ||||||||||| |||||||||||||| ||||  ||  |||| ||||||| ||| ||||||
Sbjct: 14266 gtccggaagctggtgaagaggcccattatgatgcacacgaggaggatgatgagtacctcc 14207

                                                                         
Query: 248   gaagagaagtcccacgtcagctccctgaagtagatgagcgccaagaacacgcccagacac 307
             || ||||| ||||| || |   |||| | ||| |  || |||||||||||| | || || 
Sbjct: 14206 gatgagaaatcccaggttaagcccctcacgtaaacaagggccaagaacacggcgaggcag 14147

                                       
Query: 308   agcgtgttgttcatggtcacgccacc 333
             || ||||||||||||||||| |||||
Sbjct: 14146 agtgtgttgttcatggtcactccacc 14121



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 370   cttcttcctgctggcgaagatgatggctgagacagcctcgctggaatt 417
             |||||||| ||| || || || || |||||||||||||||||||||||
Sbjct: 13873 cttcttccggctagcaaatataattgctgagacagcctcgctggaatt 13826
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>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0090H18
          Length = 174842

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 118/146 (80%)
 Strand = Plus / Minus

                                                                          
Query: 188    gtccggaagcttgtgaagaggcccatgatgacacaggcgagcaggatgacgagcacctcc 247
              ||||||||||| |||||||||||||| ||||  ||  |||| ||||||| ||| ||||||
Sbjct: 138087 gtccggaagctggtgaagaggcccattatgatgcacacgaggaggatgatgagtacctcc 138028

                                                                          
Query: 248    gaagagaagtcccacgtcagctccctgaagtagatgagcgccaagaacacgcccagacac 307
              || ||||| ||||| || |   |||| | ||| |  || |||||||||||| | || || 
Sbjct: 138027 gatgagaaatcccaggttaagcccctcacgtaaacaagggccaagaacacggcgaggcag 137968

                                        
Query: 308    agcgtgttgttcatggtcacgccacc 333
              || ||||||||||||||||| |||||
Sbjct: 137967 agtgtgttgttcatggtcactccacc 137942



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                              
Query: 370    cttcttcctgctggcgaagatgatggctgagacagcctcgctggaatt 417
              |||||||| ||| || || || || |||||||||||||||||||||||
Sbjct: 137694 cttcttccggctagcaaatataattgctgagacagcctcgctggaatt 137647
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>ref|XM_363303.1| Magnaporthe grisea 70-15 hypothetical protein (MG01229.4) partial
           mRNA
          Length = 810

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 370 cttcttcctgctggcgaagatgat 393
           ||||||||||||||||||||||||
Sbjct: 294 cttcttcctgctggcgaagatgat 317
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>gb|AC166937.2| Mus musculus BAC clone RP24-121A12 from chromosome 10, complete
             sequence
          Length = 183115

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 362   gtcctctgcttcttcctgctggcg 385
             ||||||||||||||||||||||||
Sbjct: 92661 gtcctctgcttcttcctgctggcg 92638
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>dbj|AK220271.1| Mus musculus premature mRNA for mKIAA1814 protein
          Length = 7688

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 362  gtcctctgcttcttcctgctggcg 385
            ||||||||||||||||||||||||
Sbjct: 5296 gtcctctgcttcttcctgctggcg 5319
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>gb|AC152413.5| Mus musculus BAC clone RP23-431A21 from chromosome 10, complete
             sequence
          Length = 195951

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 362   gtcctctgcttcttcctgctggcg 385
             ||||||||||||||||||||||||
Sbjct: 42153 gtcctctgcttcttcctgctggcg 42176
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>gb|AC005368.1| Homo sapiens chromosome 5, BAC clone 194j18 (LBNL H158), complete
            sequence
          Length = 118995

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 338  acctctgagaaagtgagggagcaag 362
            |||||| ||||||||||||||||||
Sbjct: 3377 acctcttagaaagtgagggagcaag 3401
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>gb|AC008781.7| Homo sapiens chromosome 5 clone CTD-2024I7, complete sequence
          Length = 205516

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 338    acctctgagaaagtgagggagcaag 362
              |||||| ||||||||||||||||||
Sbjct: 114434 acctcttagaaagtgagggagcaag 114410
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>ref|NM_122383.2| Arabidopsis thaliana unknown protein AT5G24740 mRNA, complete cds
          Length = 10043

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 359  caagtcctctgcttcttcct 378
            ||||||||||||||||||||
Sbjct: 9834 caagtcctctgcttcttcct 9815
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>ref|XM_483110.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 992

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 145 gtacagcaggtacgccacca 164
           ||||||||||||||||||||
Sbjct: 221 gtacagcaggtacgccacca 202
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>gb|BC081611.1| Danio rerio zgc:92159, mRNA (cDNA clone MGC:92159 IMAGE:7049991),
           complete cds
          Length = 1410

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 148 cagcaggtacgccaccagac 167
           ||||||||||||||||||||
Sbjct: 790 cagcaggtacgccaccagac 771
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>gb|U41553.1| Caenorhabditis elegans cosmid ZK1193, complete sequence
          Length = 33075

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 34    aaattacaatgagtcaaaaatcaa 57
             ||||||| ||||||||||||||||
Sbjct: 28693 aaattactatgagtcaaaaatcaa 28716
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>emb|AL392145.1|ATT4C12 Arabidopsis thaliana DNA chromosome 5, BAC clone T4C12 (ESSA project)
          Length = 87871

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 359  caagtcctctgcttcttcct 378
            ||||||||||||||||||||
Sbjct: 4265 caagtcctctgcttcttcct 4284
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>ref|NM_001004590.1| Danio rerio zgc:92159 (zgc:92159), mRNA
          Length = 1410

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 148 cagcaggtacgccaccagac 167
           ||||||||||||||||||||
Sbjct: 790 cagcaggtacgccaccagac 771
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>gb|AY119124.1| Drosophila melanogaster RE27864 full insert cDNA
          Length = 3346

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 379  gctggcgaagatgatggctgagac 402
            |||||||||||||| |||||||||
Sbjct: 2312 gctggcgaagatgaaggctgagac 2289
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>ref|NM_206141.1| Drosophila melanogaster CG33456-PA (CG33456) mRNA, complete cds
          Length = 3329

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 379  gctggcgaagatgatggctgagac 402
            |||||||||||||| |||||||||
Sbjct: 2312 gctggcgaagatgaaggctgagac 2289
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>gb|AC025538.6| Homo sapiens BAC clone RP11-274J2 from 4, complete sequence
          Length = 161478

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   agaaagtgagggagcaagtc 364
             ||||||||||||||||||||
Sbjct: 42705 agaaagtgagggagcaagtc 42724
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>gb|AC099030.1| Drosophila melanogaster, chromosome 2R, region 53F-54X, BAC clone
             BACR09M08, complete sequence
          Length = 179283

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 379   gctggcgaagatgatggctgagac 402
             |||||||||||||| |||||||||
Sbjct: 98490 gctggcgaagatgaaggctgagac 98513
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>emb|BX248230.21| Zebrafish DNA sequence from clone CH211-213O11 in linkage group 11,
             complete sequence
          Length = 217432

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   cagcaggtacgccaccagac 167
             ||||||||||||||||||||
Sbjct: 12978 cagcaggtacgccaccagac 12997
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 145      gtacagcaggtacgccacca 164
                ||||||||||||||||||||
Sbjct: 24329567 gtacagcaggtacgccacca 24329586
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>dbj|AB013392.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19
          Length = 84129

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     aacacaacaaacacctcgaa 21
             ||||||||||||||||||||
Sbjct: 58252 aacacaacaaacacctcgaa 58271
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>dbj|AP004762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0686H11
          Length = 135273

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   gtacagcaggtacgccacca 164
             ||||||||||||||||||||
Sbjct: 69871 gtacagcaggtacgccacca 69890
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>gb|AC154822.2| Mus musculus BAC clone RP24-537L18 from 13, complete sequence
          Length = 167628

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    gtcaaaaatcaaactcaagc 65
             ||||||||||||||||||||
Sbjct: 71144 gtcaaaaatcaaactcaagc 71163
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>dbj|AK065316.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P08, full
           insert sequence
          Length = 992

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 145 gtacagcaggtacgccacca 164
           ||||||||||||||||||||
Sbjct: 221 gtacagcaggtacgccacca 202
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>gb|AE003805.3| Drosophila melanogaster chromosome 2R, section 45 of 73 of the complete
              sequence
          Length = 272948

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 379    gctggcgaagatgatggctgagac 402
              |||||||||||||| |||||||||
Sbjct: 216987 gctggcgaagatgaaggctgagac 217010
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>gb|AC004641.1|AC004641 Drosophila melanogaster DNA sequence (P1s DS07321 (D175), DS05993
            (D241), and DS06306 (D173)), complete sequence
          Length = 154985

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 379  gctggcgaagatgatggctgagac 402
            |||||||||||||| |||||||||
Sbjct: 7307 gctggcgaagatgaaggctgagac 7284
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>dbj|D83997.1| Capparis masaikai mRNA for mabinlin, complete cds
          Length = 630

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 103 gaagacgaagtcgaggacgtaaacgatg 130
           |||||||||||||||||||  |||||||
Sbjct: 236 gaagacgaagtcgaggacgacaacgatg 263


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,971,289
Number of Sequences: 3902068
Number of extensions: 3971289
Number of successful extensions: 71060
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70949
Number of HSP's gapped (non-prelim): 108
length of query: 481
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 459
effective length of database: 17,147,199,772
effective search space: 7870564695348
effective search space used: 7870564695348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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