Clone Name | rbart55h09 |
---|---|
Clone Library Name | barley_pub |
>gb|AY589584.1| Triticum aestivum alpha-expansin EXPA2 mRNA, complete cds Length = 1142 Score = 216 bits (109), Expect = 4e-53 Identities = 210/241 (87%), Gaps = 12/241 (4%) Strand = Plus / Minus Query: 111 cttaaatagatcaccttgcggggtttccacaacacaaggctacactaacaatgatcaaaa 170 |||||||| ||||||||||| |||| |||||| |||||| ||||||||||||||||||| Sbjct: 1065 cttaaataaatcaccttgcgatgttttcacaacgcaaggccacactaacaatgatcaaaa 1006 Query: 171 tgctcagcttcacaatga----taacttatttatctctacgataatggcctactagcatg 226 |||||| || |||||| | |||||||||||| ||||| || || ||||||| ||| Sbjct: 1005 tgctcaactccacaataagtaataacttatttatgtctac--tactgtgctactagtatg 948 Query: 227 agagaaggaaaggcctaagcgggtgctgatcagcagcagcctcaaaatagccgaaggcct 286 |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 947 agagaagggaaggcctaagcgggtgctgatcagcagcagcctcggaatagccgaaggcct 888 Query: 287 cttctgtagtatagtaacgaagaggtttccttcttctcttgctcaagctccaaaccaatg 346 ||||| || || ||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 887 cttctttacta---taacgaagaggtttc---cttctcttgctcaagctccaaaccaatg 834 Query: 347 c 347 | Sbjct: 833 c 833 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 41 gcaacaagagaagttacaagatactctcacacaccac 77 ||||||| ||||||||||||| ||||||||||||||| Sbjct: 1129 gcaacaacagaagttacaagacactctcacacaccac 1093
>gb|AY543529.1| Triticum aestivum expansin EXPA3 mRNA, complete cds Length = 1106 Score = 208 bits (105), Expect = 9e-51 Identities = 209/241 (86%), Gaps = 12/241 (4%) Strand = Plus / Minus Query: 111 cttaaatagatcaccttgcggggtttccacaacacaaggctacactaacaatgatcaaaa 170 |||||||| ||||||||||| |||| |||||| |||||| ||||||||||||||||||| Sbjct: 1068 cttaaataaatcaccttgcgatgttttcacaacgcaaggccacactaacaatgatcaaaa 1009 Query: 171 tgctcagcttcacaatga----taacttatttatctctacgataatggcctactagcatg 226 ||| || || |||||| | |||||||||||| ||||| || || ||||||| ||| Sbjct: 1008 tgcacaactccacaataagtaataacttatttatgtctac--tactgtgctactagtatg 951 Query: 227 agagaaggaaaggcctaagcgggtgctgatcagcagcagcctcaaaatagccgaaggcct 286 |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 950 agagaagggaaggcctaagcgggtgctgatcagcagcagcctcggaatagccgaaggcct 891 Query: 287 cttctgtagtatagtaacgaagaggtttccttcttctcttgctcaagctccaaaccaatg 346 ||||| || || ||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 890 cttctttacta---taacgaagaggtttc---cttctcttgctcaagctccaaaccaatg 837 Query: 347 c 347 | Sbjct: 836 c 836
>emb|AJ276007.1|FPR276007 Festuca pratensis partial mRNA for expansin (exp2 gene) Length = 1248 Score = 111 bits (56), Expect = 2e-21 Identities = 107/123 (86%), Gaps = 7/123 (5%) Strand = Plus / Minus Query: 225 tgagagaaggaaaggcctaagcgggtgctgatcagcagcagcctcaaaatagccgaaggc 284 |||||||||| |||||| |||||||||||||||||||||| |||| ||||||||||||| Sbjct: 998 tgagagaagggaaggcccaagcgggtgctgatcagcagcaacctcggaatagccgaaggc 939 Query: 285 ctcttctgtagtatagtaacgaagaggtttccttcttctcttgctcaagctccaaaccaa 344 ||||||| || || |||||||||||| | |||||||||||||||||||||| ||| Sbjct: 938 ctcttctttacta---taacgaagaggt----tccttctcttgctcaagctccaaatcaa 886 Query: 345 tgc 347 ||| Sbjct: 885 tgc 883 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Minus Query: 33 gttacaacgcaacaagagaagttacaagatactctcacacaccac 77 ||||||||| ||||| | ||||||||||| |||| |||||||||| Sbjct: 1174 gttacaacgtaacaacaaaagttacaagaaactcacacacaccac 1130
>gb|AF332169.1| Zea mays alpha-expansin (expA1) mRNA, complete cds Length = 1090 Score = 46.1 bits (23), Expect = 0.076 Identities = 26/27 (96%) Strand = Plus / Minus Query: 227 agagaaggaaaggcctaagcgggtgct 253 ||||||||||| ||||||||||||||| Sbjct: 956 agagaaggaaatgcctaagcgggtgct 930
>gb|AY104146.1| Zea mays PCO064861 mRNA sequence Length = 1106 Score = 46.1 bits (23), Expect = 0.076 Identities = 26/27 (96%) Strand = Plus / Minus Query: 227 agagaaggaaaggcctaagcgggtgct 253 ||||||||||| ||||||||||||||| Sbjct: 973 agagaaggaaatgcctaagcgggtgct 947
>dbj|AB022221.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSD23 Length = 33479 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 93 tgtattactaaaagtacactta 114 |||||||||||||||||||||| Sbjct: 30769 tgtattactaaaagtacactta 30748
>gb|AC126930.4| Mus musculus BAC clone RP24-547J4 from 8, complete sequence Length = 191241 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 62 tactctcacacaccacacacca 83 |||||||||||||||||||||| Sbjct: 108235 tactctcacacaccacacacca 108214
>emb|Z69791.1|CEF39D8 Caenorhabditis elegans Cosmid F39D8, complete sequence Length = 25523 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 249 gtgctgatcagcagcagcctcaaaa 273 ||||||||||||||||||| ||||| Sbjct: 7247 gtgctgatcagcagcagccacaaaa 7223
>emb|AL008718.23|HS268H5 Human DNA sequence from clone CTA-268H5 on chromosome 22q13.2-13.3, complete sequence Length = 188833 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 actctcacacaccacacacca 83 ||||||||||||||||||||| Sbjct: 113585 actctcacacaccacacacca 113565 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 actctcacacaccacacacca 83 ||||||||||||||||||||| Sbjct: 113445 actctcacacaccacacacca 113425
>ref|NM_078144.2| Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) (pqn-36) mRNA, complete cds Length = 3032 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 249 gtgctgatcagcagcagcctcaaaa 273 ||||||||||||||||||| ||||| Sbjct: 2944 gtgctgatcagcagcagccacaaaa 2968
>ref|NM_078146.2| Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) (pqn-36) mRNA, complete cds Length = 2940 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 249 gtgctgatcagcagcagcctcaaaa 273 ||||||||||||||||||| ||||| Sbjct: 2687 gtgctgatcagcagcagccacaaaa 2711
>ref|NM_078145.2| Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) (pqn-36) mRNA, complete cds Length = 3241 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 249 gtgctgatcagcagcagcctcaaaa 273 ||||||||||||||||||| ||||| Sbjct: 2986 gtgctgatcagcagcagccacaaaa 3010
>ref|NM_027074.1| Mus musculus RIKEN cDNA 1700025F22 gene (1700025F22Rik), mRNA Length = 632 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gaaggcctcttctgtagtat 298 |||||||||||||||||||| Sbjct: 269 gaaggcctcttctgtagtat 250
>gb|AC147331.3| Pan troglodytes BAC clone RP43-10H17 from 7, complete sequence Length = 189220 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 cagcttcacaatgataacttattt 198 |||||||||||| ||||||||||| Sbjct: 185625 cagcttcacaataataacttattt 185602
>gb|AC006043.1| Homo sapiens BAC clone RP11-538D15 from 7, complete sequence Length = 189036 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 cagcttcacaatgataacttattt 198 |||||||||||| ||||||||||| Sbjct: 17638 cagcttcacaataataacttattt 17615
>gb|AC118212.7| Mus musculus chromosome 6, clone RP24-170E4, complete sequence Length = 190612 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 aggtttccttcttctcttgc 328 |||||||||||||||||||| Sbjct: 156070 aggtttccttcttctcttgc 156051
>gb|AC141566.4| Mus musculus BAC clone RP23-89G14 from chromosome 7, complete sequence Length = 236600 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 ctctcacacaccacacacca 83 |||||||||||||||||||| Sbjct: 167327 ctctcacacaccacacacca 167346
>gb|AC126442.4| Mus musculus BAC clone RP23-453M12 from chromosome 7, complete sequence Length = 204287 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctctcacacaccacacacca 83 |||||||||||||||||||| Sbjct: 139261 ctctcacacaccacacacca 139242
>gb|AC121994.4| Mus musculus BAC clone RP24-301N9 from chromosome 6, complete sequence Length = 165506 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 aggtttccttcttctcttgc 328 |||||||||||||||||||| Sbjct: 12386 aggtttccttcttctcttgc 12367
>gb|AC155929.6| Mus musculus BAC clone RP24-75H6 from chromosome 10, complete sequence Length = 191193 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 315 ccttcttctcttgctcaagctccaaacc 342 ||||||| ||| |||||||||||||||| Sbjct: 27058 ccttcttttctggctcaagctccaaacc 27085
>gb|AC142289.1| Pan troglodytes BAC clone RP43-179F19 from 7, complete sequence Length = 182617 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 175 cagcttcacaatgataacttattt 198 |||||||||||| ||||||||||| Sbjct: 154711 cagcttcacaataataacttattt 154734
>emb|AL359831.9| Human DNA sequence from clone RP11-251L4 on chromosome 13, complete sequence Length = 65321 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tctcacacaccacacaccat 84 |||||||||||||||||||| Sbjct: 32461 tctcacacaccacacaccat 32442
>emb|AL161447.20| Human DNA sequence from clone RP11-379P1 on chromosome 9 Contains the 3' end of a novel gene (FLJ21613) similar to rat corneal wound healing related protein (includes FLJ22634), the GOLPH2 gene for golgi phosphoprotein 2 (GP73), a novel pseudogene and a CpG island, complete sequence Length = 160115 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cacaccacacaccattccat 89 |||||||||||||||||||| Sbjct: 74665 cacaccacacaccattccat 74684
>gb|AC128707.2| Homo sapiens 12 BAC RP11-38F22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 121538 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 tacactaacaatgatcaaaa 170 |||||||||||||||||||| Sbjct: 120713 tacactaacaatgatcaaaa 120732
>gb|AC073608.19| Homo sapiens 12 BAC RP11-36P3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 111182 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tacactaacaatgatcaaaa 170 |||||||||||||||||||| Sbjct: 110015 tacactaacaatgatcaaaa 109996
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 cttgctcaagctccaaacca 343 |||||||||||||||||||| Sbjct: 1298438 cttgctcaagctccaaacca 1298457
>gb|AC153141.7| Mus musculus BAC clone RP23-268A17 from chromosome 10, complete sequence Length = 221824 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 315 ccttcttctcttgctcaagctccaaacc 342 ||||||| ||| |||||||||||||||| Sbjct: 158906 ccttcttttctggctcaagctccaaacc 158933
>dbj|AK006335.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700025F22 product:hypothetical protein, full insert sequence Length = 651 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gaaggcctcttctgtagtat 298 |||||||||||||||||||| Sbjct: 269 gaaggcctcttctgtagtat 250
>dbj|AK041833.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630040O03 product:unclassifiable, full insert sequence Length = 1535 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cagcagcagcctcaaaatag 276 |||||||||||||||||||| Sbjct: 897 cagcagcagcctcaaaatag 878
>gb|BC048529.1| Mus musculus RIKEN cDNA 1700025F22 gene, mRNA (cDNA clone IMAGE:6774736), containing frame-shift errors Length = 609 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gaaggcctcttctgtagtat 298 |||||||||||||||||||| Sbjct: 196 gaaggcctcttctgtagtat 177
>gb|BC061241.1| Mus musculus RIKEN cDNA 1700025F22 gene, mRNA (cDNA clone MGC:74394 IMAGE:6743876), complete cds Length = 688 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gaaggcctcttctgtagtat 298 |||||||||||||||||||| Sbjct: 276 gaaggcctcttctgtagtat 257
>gb|AF064362.1|AF064362 Herpetomonas samuelpessoai clone her17 kinetoplast minicircle DNA, partial sequence Length = 641 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cacaccacacaccattccat 89 |||||||||||||||||||| Sbjct: 381 cacaccacacaccattccat 400
>dbj|AP001822.4| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2336M4, complete sequence Length = 134278 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 tgctgatcagcagcagcctc 269 |||||||||||||||||||| Sbjct: 84419 tgctgatcagcagcagcctc 84400
>gb|AC127270.4| Mus musculus BAC clone RP23-453E16 from 12, complete sequence Length = 181004 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cacacaccacacaccattcc 87 |||||||||||||||||||| Sbjct: 141400 cacacaccacacaccattcc 141419
>gb|AC148321.7| Mus musculus BAC clone RP24-512H17 from 19, complete sequence Length = 210790 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gaaggcctcttctgtagtat 298 |||||||||||||||||||| Sbjct: 41324 gaaggcctcttctgtagtat 41305
>gb|AC140392.3| Mus musculus BAC clone RP24-89F9 from chromosome 9, complete sequence Length = 225973 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 cagcagcagcctcaaaatag 276 |||||||||||||||||||| Sbjct: 113134 cagcagcagcctcaaaatag 113153
>emb|AL669980.9| Mouse DNA sequence from clone RP23-218C2 on chromosome 4, complete sequence Length = 157624 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 ctctcacacaccacacacca 83 |||||||||||||||||||| Sbjct: 155597 ctctcacacaccacacacca 155616
>emb|AL807385.11| Mouse DNA sequence from clone RP23-143B14 on chromosome 4, complete sequence Length = 221319 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctctcacacaccacacacca 83 |||||||||||||||||||| Sbjct: 173309 ctctcacacaccacacacca 173290 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,580,944 Number of Sequences: 3902068 Number of extensions: 3580944 Number of successful extensions: 98624 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98522 Number of HSP's gapped (non-prelim): 93 length of query: 352 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 330 effective length of database: 17,147,199,772 effective search space: 5658575924760 effective search space used: 5658575924760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)