ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart55h08 |
|---|---|
| Clone Library Name | barley_pub |
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 50.4 bits (119), Expect = 2e-06 Identities = 24/53 (45%), Positives = 37/53 (69%) Frame = -2 Query: 421 ALGSSHQYLRIQYDQLSGSAGSIDDCSKANLNKLVEIGNELLGKKVSQVDLET 263 AL S + YLR+Q + L+G+ +DD S+AN+ LV++G +LL K VS+ + ET Sbjct: 309 ALDSQNNYLRVQENALTGTTTELDDASEANMQLLVQVGEDLLKKSVSKDNPET 361
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 45.4 bits (106), Expect = 6e-05 Identities = 22/50 (44%), Positives = 33/50 (66%) Frame = -2 Query: 412 SSHQYLRIQYDQLSGSAGSIDDCSKANLNKLVEIGNELLGKKVSQVDLET 263 S + YLR+Q + L+G+ +DD S+AN+ LV++G LL K VS+ ET Sbjct: 312 SQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSKDSPET 361
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 45.4 bits (106), Expect = 6e-05 Identities = 22/50 (44%), Positives = 33/50 (66%) Frame = -2 Query: 412 SSHQYLRIQYDQLSGSAGSIDDCSKANLNKLVEIGNELLGKKVSQVDLET 263 S + YLR+Q + L+G+ +DD S+AN+ LV++G LL K VS+ ET Sbjct: 312 SQNNYLRVQENALNGTTTEMDDASEANMELLVQVGETLLKKPVSKDSPET 361
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 45.4 bits (106), Expect = 6e-05 Identities = 22/50 (44%), Positives = 33/50 (66%) Frame = -2 Query: 412 SSHQYLRIQYDQLSGSAGSIDDCSKANLNKLVEIGNELLGKKVSQVDLET 263 S + YLR+Q + L+G+ +DD S+AN+ LV++G LL K VS+ ET Sbjct: 312 SQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSKDSPET 361
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 45.4 bits (106), Expect = 6e-05 Identities = 22/50 (44%), Positives = 33/50 (66%) Frame = -2 Query: 412 SSHQYLRIQYDQLSGSAGSIDDCSKANLNKLVEIGNELLGKKVSQVDLET 263 S + YLR+Q + L+G+ +DD S+AN+ LV++G LL K VS+ ET Sbjct: 303 SQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSKDSPET 352
>APEA_CLOAB (Q97K30) Probable M18-family aminopeptidase 1 (EC 3.4.11.-)| Length = 465 Score = 31.6 bits (70), Expect = 0.83 Identities = 22/66 (33%), Positives = 35/66 (53%) Frame = -2 Query: 391 IQYDQLSGSAGSIDDCSKANLNKLVEIGNELLGKKVSQVDLETGRNMEVPGGGTNAEQLA 212 I +++ +GS G C+ AN + E+ L + V+ E G+ ++ GGGT A LA Sbjct: 367 IVFNKYTGSRGK-SGCNDANPEYIAELRRILSKESVNWQTAELGK-VDQGGGGTIAYILA 424 Query: 211 EYAKQL 194 EY Q+ Sbjct: 425 EYGMQV 430
>CP27A_HUMAN (Q02318) Cytochrome P450 27, mitochondrial precursor (EC| 1.14.13.15) (Cytochrome P-450C27/25) (Sterol 26-hydroxylase) (Sterol 27-hydroxylase) (Vitamin D(3) 25-hydroxylase) (5-beta-cholestane-3-alpha,7-alpha,12-alpha-triol 27-hydroxylase) Length = 531 Score = 31.2 bits (69), Expect = 1.1 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -3 Query: 279 KWIWRPAGTWRCPAGAPMQSS*PSMLSNSQTSGAVGA 169 +W R AG CP GA +++ P+ L + + +GA GA Sbjct: 10 RWALRGAGRGLCPHGARAKAAIPAALPSDKATGAPGA 46
>HN_SENDO (Q88261) Hemagglutinin-neuraminidase (EC 3.2.1.18) (HN protein)| (HANA protein) Length = 575 Score = 30.8 bits (68), Expect = 1.4 Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 9/42 (21%) Frame = -3 Query: 264 PAGTWRCPAGAPMQSS--------*PSMLSNSQT-SGAVGAP 166 P WRCPAG P SS PS+LS S T SG V P Sbjct: 155 PHSFWRCPAGEPYLSSDPEVSLLPGPSLLSGSTTISGCVRLP 196
>HN_SENDA (Q783Y1) Hemagglutinin-neuraminidase (EC 3.2.1.18) (HN protein)| Length = 575 Score = 30.8 bits (68), Expect = 1.4 Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 9/42 (21%) Frame = -3 Query: 264 PAGTWRCPAGAPMQSS--------*PSMLSNSQT-SGAVGAP 166 P WRCPAG P SS PS+LS S T SG V P Sbjct: 155 PHSFWRCPAGEPYLSSDPEVSLLPGPSLLSGSTTISGCVRLP 196
>KPYK_BUCAI (P57404) Pyruvate kinase (EC 2.7.1.40) (PK)| Length = 480 Score = 30.4 bits (67), Expect = 1.9 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = -2 Query: 400 YLRIQYDQLSGSAGSIDDCSKANLNKLVEIGNELLGKKVSQVDLETGRNMEVPGGGTNAE 221 Y ++ YD G +DD + L + G+E+L K V L + + GGG +A+ Sbjct: 114 YKQLPYDLKVGDVLLLDD-GRIQLKVIKSTGHEILTKVVIGGILSNNKGINKLGGGLSAD 172 Query: 220 QLAEYAKQ 197 L E K+ Sbjct: 173 ALTEKDKK 180
>AF17_HUMAN (P55198) Protein AF-17| Length = 1093 Score = 29.6 bits (65), Expect = 3.2 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +3 Query: 237 PPGTSMFRPVSRSTWDTFFPRSSLPISTS-LFKLA 338 PPGTS +SRS + + P SS IST+ +F LA Sbjct: 582 PPGTSALPRLSRSPFTSTLPSSSASISTTQVFSLA 616
>HN_SENDH (P03425) Hemagglutinin-neuraminidase (EC 3.2.1.18) (HN protein)| Length = 576 Score = 29.3 bits (64), Expect = 4.1 Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 9/42 (21%) Frame = -3 Query: 264 PAGTWRCPAGAPMQSS--------*PSMLSNSQT-SGAVGAP 166 P WRCP G P SS PS+LS S T SG V P Sbjct: 155 PHSFWRCPVGEPYLSSDPKISLLLGPSLLSGSTTISGCVRLP 196
>HN_SENDZ (P04853) Hemagglutinin-neuraminidase (EC 3.2.1.18) (HN protein)| Length = 575 Score = 29.3 bits (64), Expect = 4.1 Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 9/42 (21%) Frame = -3 Query: 264 PAGTWRCPAGAPMQSS--------*PSMLSNSQT-SGAVGAP 166 P WRCP G P SS PS+LS S T SG V P Sbjct: 155 PHSFWRCPVGEPYLSSDPEISLLPGPSLLSGSTTISGCVRLP 196
>HN_SENDF (P19758) Hemagglutinin-neuraminidase (EC 3.2.1.18) (HN protein)| Length = 575 Score = 29.3 bits (64), Expect = 4.1 Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 9/42 (21%) Frame = -3 Query: 264 PAGTWRCPAGAPMQSS--------*PSMLSNSQT-SGAVGAP 166 P WRCP G P SS PS+LS S T SG V P Sbjct: 155 PHSFWRCPVGEPYLSSDPKISLLPGPSLLSGSTTISGCVRLP 196
>HXB4_CHICK (P14840) Homeobox protein Hox-B4 (Chox-Z)| Length = 245 Score = 29.3 bits (64), Expect = 4.1 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +2 Query: 233 APAGHLHVPAGLQIHL 280 +P GH+H PAGLQ HL Sbjct: 77 SPRGHVHPPAGLQSHL 92
>ALR_STRCO (O86786) Alanine racemase (EC 5.1.1.1)| Length = 391 Score = 28.9 bits (63), Expect = 5.4 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -3 Query: 276 WIWRPAGTWRCPAGAPMQSS*PSMLSNSQTSGAVGA 169 W+W P G WR A + S +M + + +GA A Sbjct: 96 WLWTPGGPWREAVEARLDVSVSAMWAMEEVTGAARA 131
>HN_PI1HW (P16071) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 575 Score = 28.9 bits (63), Expect = 5.4 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 9/42 (21%) Frame = -3 Query: 264 PAGTWRCPAGAPMQSS--------*PSMLSNSQT-SGAVGAP 166 P WRCP G P+ S+ PS+LS S T SG V P Sbjct: 155 PHDFWRCPVGEPLLSNNPNISLLPGPSLLSGSTTISGCVRLP 196
>Y952_CAUCR (Q45979) Hypothetical protein CC0952| Length = 106 Score = 28.9 bits (63), Expect = 5.4 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +1 Query: 175 DGAARLRVA*HTRLAALHWCPRRAPPCSGRSPDPLGIP 288 DG RL + RL L W P+ PP S SP P+ P Sbjct: 67 DGEERLVLLGDGRL--LDWTPKGPPPASALSPSPVAEP 102
>SYP31_ARATH (Q9FFK1) Syntaxin-31 (AtSYP31) (AtSED5)| Length = 336 Score = 28.5 bits (62), Expect = 7.1 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -2 Query: 319 VEIGNELLGKKVSQVDLETGRNMEVPGGGTNAEQLAEY 206 V I N++ G ++ DL+T +NME+ G + +Q+ Y Sbjct: 90 VLIRNDITGLNMALSDLQTLQNMELADGNYSQDQVGHY 127
>ARMX6_HUMAN (Q7L4S7) Protein ARMCX6| Length = 300 Score = 28.5 bits (62), Expect = 7.1 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = -1 Query: 317 GDW**ASREEGIPSGSGDRPEHGG-ARRGHQCRAASRVC*ATLKRAAPSEHQ 165 GDW E G P G+ DRP GG A R H + +R P EH+ Sbjct: 73 GDW----TEPGAPGGTEDRPSGGGKANRAHPIK----------QRPFPYEHK 110
>PPDK_TREPA (O83728) Pyruvate, phosphate dikinase (EC 2.7.9.1) (Pyruvate,| orthophosphate dikinase) Length = 901 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = -2 Query: 298 LGKKVSQVDLETGRNMEVPGGGTNAEQLAEYAK 200 L K +VD + G +E+P +A+++A YA+ Sbjct: 734 LALKAKEVDYKVGAMIELPAAALSADEIARYAQ 766
>SUL2_YEAST (Q12325) Sulfate permease 2 (High-affinity sulfate transporter 2)| Length = 893 Score = 28.5 bits (62), Expect = 7.1 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Frame = +2 Query: 242 GHLHVPAGLQIHLGYLLPEKLITNL--H*LIQVSFGAVVD 355 G HVP GL LG LP +I L H I SFG + D Sbjct: 396 GVFHVPPGLMSKLGPNLPASIIVLLLEHIAISKSFGRIND 435
>MUTS_PSYAR (Q4FV41) DNA mismatch repair protein mutS| Length = 1058 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = +2 Query: 251 HVPAGLQIHLGYLLPEKLITNLH*LIQVSFGAVVDRARASAQL 379 H+ G + GY +T+LH IQV+ +V+RAR +QL Sbjct: 529 HIRDGGMLAAGYDDEFDRLTHLHDNIQVTLDEMVERARLESQL 571
>AEX3_CAEEL (O02626) Regulator of presynaptic activity aex-3 (Aboc, expulsion| defective protein 3) Length = 1409 Score = 28.1 bits (61), Expect = 9.2 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +1 Query: 235 PRRAPPCSGRSPDPLGIP 288 PR APP R+P PLG P Sbjct: 970 PREAPPIPKRNPPPLGAP 987 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,306,657 Number of Sequences: 219361 Number of extensions: 1126043 Number of successful extensions: 3351 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3255 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3349 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
