Clone Name | rbart55h05 |
---|---|
Clone Library Name | barley_pub |
>emb|AL663066.12| Mouse DNA sequence from clone RP23-416K12 on chromosome 11 Contains the 5' end of a novel genes, an H+ transporting ATPase V1 subunit G isoform 1 (Atp6v1g1) pseudogene, an upstream transcription factor 1 (Usf1) pseudogene, the 5' end of the Ssh2 gene for slingshot homolog 2 (Drosophila) and a CpG island, complete sequence Length = 160589 Score = 42.1 bits (21), Expect = 0.67 Identities = 24/25 (96%) Strand = Plus / Minus Query: 20 taattaacaaaaagatgcaagatat 44 ||||||| ||||||||||||||||| Sbjct: 101521 taattaaaaaaaagatgcaagatat 101497
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 caaattaattaacaaaaaga 34 |||||||||||||||||||| Sbjct: 2299528 caaattaattaacaaaaaga 2299547
>gb|AC141923.27| Medicago truncatula clone mth2-7f19, complete sequence Length = 116685 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 caaattaattaacaaaaaga 34 |||||||||||||||||||| Sbjct: 26962 caaattaattaacaaaaaga 26981
>emb|BX005436.12| Zebrafish DNA sequence from clone DKEY-9A8 in linkage group 6, complete sequence Length = 168549 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 aacaaattaattaacaaaaa 32 |||||||||||||||||||| Sbjct: 120382 aacaaattaattaacaaaaa 120401
>emb|AL451054.22| Human DNA sequence from clone RP11-275O4 on chromosome 1 Contains two tubulin beta pseudogenes, a novel gene, the 5' end of a novel protein (MGC42493) and four CpG islands, complete sequence Length = 147567 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aacaaattaattaacaaaaa 32 |||||||||||||||||||| Sbjct: 143052 aacaaattaattaacaaaaa 143033
>emb|AL513025.13| Mouse DNA sequence from clone RP23-235O1 on chromosome 13 Contains the 5' end of a novel gene, the E2f3 gene for E2F transcription factor 3, a novel gene and two CpG islands, complete sequence Length = 197940 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 gattttgcaaagggatctag 114 |||||||||||||||||||| Sbjct: 143569 gattttgcaaagggatctag 143588
>emb|AL646050.7| Mouse DNA sequence from clone RP23-460G5 on chromosome 11 Contains a ribosomal protein L7 (Rpl7) pseudogene and a CpG island, complete sequence Length = 164018 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 aacaaattaattaacaaaaa 32 |||||||||||||||||||| Sbjct: 63628 aacaaattaattaacaaaaa 63647
>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence Length = 147117 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aacaaattaattaacaaaaa 32 |||||||||||||||||||| Sbjct: 100954 aacaaattaattaacaaaaa 100935
>emb|BX324145.12| Zebrafish DNA sequence from clone CH211-207C13 in linkage group 16, complete sequence Length = 196595 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 aacaaattaattaacaaaaa 32 |||||||||||||||||||| Sbjct: 125203 aacaaattaattaacaaaaa 125222
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aacaaattaattaacaaaaa 32 |||||||||||||||||||| Sbjct: 21425941 aacaaattaattaacaaaaa 21425922
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 ggatctagctagctagctac 126 |||||||||||||||||||| Sbjct: 20964069 ggatctagctagctagctac 20964088
>dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0431A03 Length = 149500 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 ggatctagctagctagctac 126 |||||||||||||||||||| Sbjct: 30244 ggatctagctagctagctac 30263
>emb|BX004817.8| Zebrafish DNA sequence from clone DKEY-169B7, complete sequence Length = 174174 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 gaacaaattaattaacaaaa 31 |||||||||||||||||||| Sbjct: 941 gaacaaattaattaacaaaa 922
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aacaaattaattaacaaaaa 32 |||||||||||||||||||| Sbjct: 21437204 aacaaattaattaacaaaaa 21437185 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,502,534 Number of Sequences: 3902068 Number of extensions: 1502534 Number of successful extensions: 122227 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 121842 Number of HSP's gapped (non-prelim): 385 length of query: 209 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 187 effective length of database: 17,147,199,772 effective search space: 3206526357364 effective search space used: 3206526357364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)