ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL663066.12| Mouse DNA sequence from clone RP23-416K12 on ch... 42 0.67
2gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 2.6
3gb|AC141923.27| Medicago truncatula clone mth2-7f19, complete se... 40 2.6
4emb|BX005436.12| Zebrafish DNA sequence from clone DKEY-9A8 in l... 40 2.6
5emb|AL451054.22| Human DNA sequence from clone RP11-275O4 on chr... 40 2.6
6emb|AL513025.13| Mouse DNA sequence from clone RP23-235O1 on chr... 40 2.6
7emb|AL646050.7| Mouse DNA sequence from clone RP23-460G5 on chro... 40 2.6
8gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 geno... 40 2.6
9emb|BX324145.12| Zebrafish DNA sequence from clone CH211-207C13 ... 40 2.6
10dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
11dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
12dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
13emb|BX004817.8| Zebrafish DNA sequence from clone DKEY-169B7, co... 40 2.6
14gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6

>emb|AL663066.12| Mouse DNA sequence from clone RP23-416K12 on chromosome 11 Contains the
              5' end of a novel genes, an H+ transporting ATPase V1
              subunit G isoform 1 (Atp6v1g1) pseudogene, an upstream
              transcription factor 1 (Usf1) pseudogene, the 5' end of the
              Ssh2 gene for slingshot homolog 2 (Drosophila) and a CpG
              island, complete sequence
          Length = 160589

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 20     taattaacaaaaagatgcaagatat 44
              ||||||| |||||||||||||||||
Sbjct: 101521 taattaaaaaaaagatgcaagatat 101497



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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 15      caaattaattaacaaaaaga 34
               ||||||||||||||||||||
Sbjct: 2299528 caaattaattaacaaaaaga 2299547



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>gb|AC141923.27| Medicago truncatula clone mth2-7f19, complete sequence
          Length = 116685

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    caaattaattaacaaaaaga 34
             ||||||||||||||||||||
Sbjct: 26962 caaattaattaacaaaaaga 26981



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>emb|BX005436.12| Zebrafish DNA sequence from clone DKEY-9A8 in linkage group 6, complete
              sequence
          Length = 168549

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     aacaaattaattaacaaaaa 32
              ||||||||||||||||||||
Sbjct: 120382 aacaaattaattaacaaaaa 120401



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>emb|AL451054.22| Human DNA sequence from clone RP11-275O4 on chromosome 1 Contains two
              tubulin beta pseudogenes, a novel gene, the 5' end of a
              novel protein (MGC42493) and four CpG islands, complete
              sequence
          Length = 147567

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     aacaaattaattaacaaaaa 32
              ||||||||||||||||||||
Sbjct: 143052 aacaaattaattaacaaaaa 143033



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>emb|AL513025.13| Mouse DNA sequence from clone RP23-235O1 on chromosome 13 Contains the 5'
              end of a novel gene, the E2f3 gene for E2F transcription
              factor 3, a novel gene and two CpG islands, complete
              sequence
          Length = 197940

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     gattttgcaaagggatctag 114
              ||||||||||||||||||||
Sbjct: 143569 gattttgcaaagggatctag 143588



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>emb|AL646050.7| Mouse DNA sequence from clone RP23-460G5 on chromosome 11 Contains a
             ribosomal protein L7 (Rpl7) pseudogene and a CpG island,
             complete sequence
          Length = 164018

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    aacaaattaattaacaaaaa 32
             ||||||||||||||||||||
Sbjct: 63628 aacaaattaattaacaaaaa 63647



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>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete
              sequence
          Length = 147117

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     aacaaattaattaacaaaaa 32
              ||||||||||||||||||||
Sbjct: 100954 aacaaattaattaacaaaaa 100935



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>emb|BX324145.12| Zebrafish DNA sequence from clone CH211-207C13 in linkage group 16,
              complete sequence
          Length = 196595

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     aacaaattaattaacaaaaa 32
              ||||||||||||||||||||
Sbjct: 125203 aacaaattaattaacaaaaa 125222



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 13       aacaaattaattaacaaaaa 32
                ||||||||||||||||||||
Sbjct: 21425941 aacaaattaattaacaaaaa 21425922



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 107      ggatctagctagctagctac 126
                ||||||||||||||||||||
Sbjct: 20964069 ggatctagctagctagctac 20964088



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>dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0431A03
          Length = 149500

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   ggatctagctagctagctac 126
             ||||||||||||||||||||
Sbjct: 30244 ggatctagctagctagctac 30263



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>emb|BX004817.8| Zebrafish DNA sequence from clone DKEY-169B7, complete sequence
          Length = 174174

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  gaacaaattaattaacaaaa 31
           ||||||||||||||||||||
Sbjct: 941 gaacaaattaattaacaaaa 922



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 13       aacaaattaattaacaaaaa 32
                ||||||||||||||||||||
Sbjct: 21437204 aacaaattaattaacaaaaa 21437185


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,502,534
Number of Sequences: 3902068
Number of extensions: 1502534
Number of successful extensions: 122227
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121842
Number of HSP's gapped (non-prelim): 385
length of query: 209
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 187
effective length of database: 17,147,199,772
effective search space: 3206526357364
effective search space used: 3206526357364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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