>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 35/135 (25%), Positives = 52/135 (38%)
 Frame = +3

Query: 18  NNSLEIYSSPVP*DCRGGTDRSKLPMFLRREENERNVKCCNV*NNPAADALASDVPVXXX 197
           +++ E  S+PVP      T+ S  P          +        +   ++ ++ VP    
Sbjct: 502 SSTTESSSAPVPTPSSSTTESSSAPAPTPSSSTTESSSAPVT--SSTTESSSAPVPTPSS 559

Query: 198 XXXI*VQTSETSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWY 377
                  T  TSSTT   S P+P+      E  S+  V  PS+    S  A  P P    
Sbjct: 560 STTESSSTPVTSSTTESSSAPVPTPSSSTTES-SSAPVPTPSSSTTESSSAPAPTPSS-- 616

Query: 378 STVAGPCAPVAAATT 422
           ST     APV ++TT
Sbjct: 617 STTESSSAPVTSSTT 631



 Score = 31.6 bits (70), Expect = 0.91
 Identities = 31/135 (22%), Positives = 52/135 (38%)
 Frame = +3

Query: 18  NNSLEIYSSPVP*DCRGGTDRSKLPMFLRREENERNVKCCNV*NNPAADALASDVPVXXX 197
           +++ E  S+PVP      T+ S  P+     E+       +   + +A   +S       
Sbjct: 385 SSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVTSSTTESSSA 444

Query: 198 XXXI*VQTSETSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWY 377
                     TSSTT   S P+P+         STT        ++++  +  P+P    
Sbjct: 445 PV--------TSSTTESSSAPVPTPSS------STTESSSAPVTSSTTESSSAPVPTPSS 490

Query: 378 STVAGPCAPVAAATT 422
           ST     APV ++TT
Sbjct: 491 STTESSSAPVTSSTT 505



 Score = 30.4 bits (67), Expect = 2.0
 Identities = 36/135 (26%), Positives = 53/135 (39%)
 Frame = +3

Query: 18   NNSLEIYSSPVP*DCRGGTDRSKLPMFLRREENERNVKCCNV*NNPAADALASDVPVXXX 197
            +++ E  S+PVP      T+ S  P+         +     V    ++   +S  PV   
Sbjct: 628  SSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTES-SSAPVPTPSSSTTESSSAPVTSS 686

Query: 198  XXXI*VQTSETSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWY 377
                      TSSTT   S P+P+      E  S+  V  PS+    S  A  P+P    
Sbjct: 687  TTES-SSAPVTSSTTESSSAPVPTPSSSTTES-SSAPVPTPSSSTTESSSA--PVPTPSS 742

Query: 378  STVAGPCAPVAAATT 422
            ST     APV ++TT
Sbjct: 743  STTESSSAPVTSSTT 757



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +3

Query: 228 TSSTTGPQSEPLPSAMVW*PEL*STTRVRFPSAVNASSPRACPPLPLEWYSTVAGPCAPV 407
           +SSTT   S P+P+         STT        ++++  +  P+P    ST     APV
Sbjct: 318 SSSTTESSSAPVPTPSS------STTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPV 371

Query: 408 AAATT 422
            ++TT
Sbjct: 372 TSSTT 376

>YPJA_ECOLI (P52143) Hypothetical outer membrane protein ypjA|
          Length = 1569

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 418  VAAATGAQGPATVEYHSSGKGGHARGELAFTAEGN 314
            VA    + G A   YHS+G GGH    + FT +GN
Sbjct: 1404 VAGKMSSGGAANGSYHSNGLGGHIETGMRFT-DGN 1437

>US32_HCMVA (P09708) Hypothetical protein HHRF7|
          Length = 183

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 369 PVARAGTRAASWRSRRRGTARGWC 298
           P  RA  RAA+WR + R   R WC
Sbjct: 45  PTTRAERRAANWRRQMRRLHRLWC 68

>PERT_BORBR (Q03035) Pertactin precursor (P.94) [Contains: Outer membrane|
           protein P.68]
          Length = 916

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 376 YHSSGKGGHARGELAFTAEGNRTRVVLYSSGYHTMADGSG 257
           +H  G  G+ RG+  FT +G      ++  GY T    SG
Sbjct: 696 WHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYIANSG 735

>PERT_BORPA (P24328) Pertactin precursor (P.95) [Contains: Outer membrane|
           protein P.70]
          Length = 922

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 376 YHSSGKGGHARGELAFTAEGNRTRVVLYSSGYHTMADGSG 257
           +H  G  G+ RG+  FT +G      ++  GY T    SG
Sbjct: 702 WHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYIANSG 741

>CABP4_BOVIN (Q8HZJ4) Calcium-binding protein 4 (CaBP4)|
          Length = 279

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -3

Query: 442 PEQQPMRVVAAATGAQGPATVEYHSSGKGGHARG 341
           P++ P+ V+A+++GA+GP  +   SS +    RG
Sbjct: 18  PQKPPVEVLASSSGAEGPPLMRKRSSKREKGLRG 51

>PERT_BORPE (P14283) Pertactin precursor (P.93) [Contains: Outer membrane|
           protein P.69]
          Length = 910

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 376 YHSSGKGGHARGELAFTAEGNRTRVVLYSSGYHTMADGSG 257
           +H  G  G+ RG+  FT +G      ++  GY T    SG
Sbjct: 690 WHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYIADSG 729


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,815,320
Number of Sequences: 219361
Number of extensions: 719269
Number of successful extensions: 2311
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2306
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)