ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL954317.8| Zebrafish DNA sequence from clone DKEY-251I8 in ... 44 0.38
2gb|AC165155.2| Mus musculus BAC clone RP23-293N22 from chromosom... 42 1.5
3gb|AC165272.2| Mus musculus BAC clone RP24-296O4 from chromosome... 42 1.5
4gb|AE011708.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.5
5gb|DQ408129.1| Peniophora nuda RNA polymerase II second largest ... 42 1.5
6gb|AY218500.1| Peniophora nuda strain FPL4756 RNA polymerase II ... 42 1.5
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
8dbj|AB020752.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 1.5
9emb|AL662960.3|OSJN00162 Oryza sativa genomic DNA, chromosome 4,... 42 1.5
10emb|AL353994.1|ATF17I14 Arabidopsis thaliana DNA chromosome 5, B... 42 1.5
11ref|XM_525966.1| PREDICTED: Pan troglodytes similar to Homeobox ... 40 6.0
12ref|XM_470372.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.0
13gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 6.0
14gb|AC186367.2| Gallus gallus BAC clone TAM31-55N19 from chromoso... 40 6.0
15ref|XM_415487.1| PREDICTED: Gallus gallus similar to TBC1 domain... 40 6.0
16gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genom... 40 6.0
17ref|XM_583872.2| PREDICTED: Bos taurus similar to RIKEN cDNA E13... 40 6.0
18ref|XM_865233.1| PREDICTED: Bos taurus similar to RIKEN cDNA E13... 40 6.0
19gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 6.0
20gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.0
21gb|AC146163.3| Pan troglodytes BAC clone RP43-24D16 from 7, comp... 40 6.0
22gb|AC007316.4| Homo sapiens BAC clone RP11-356B17 from 7, comple... 40 6.0
23gb|AY027656.1| Bos taurus peri-attachment factor (P-AF) mRNA, pa... 40 6.0
24gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 6.0
25emb|AL390739.8| Human DNA sequence from clone RP11-157F14 on chr... 40 6.0
26emb|AL356214.20| Human DNA sequence from clone RP11-30E16 on chr... 40 6.0
27emb|AL163534.9| Human DNA sequence from clone RP11-207D10 on chr... 40 6.0
28emb|AL157821.14| Human DNA sequence from clone RP11-93M14 on chr... 40 6.0
29gb|AC010196.5| Homo sapiens 12 BAC RP11-202H2 (Roswell Park Canc... 40 6.0
30emb|AL078594.36|HSDJ293L8 Human DNA sequence from clone RP1-293L... 40 6.0
31ref|XM_967215.1| PREDICTED: Tribolium castaneum similar to CG178... 40 6.0
32gb|AC011596.27| Homo sapiens 12 BAC RP11-117B7 (Roswell Park Can... 40 6.0
33emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.0
34emb|AJ278706.1|PMI278706 Penicillium minioluteum dexC gene for p... 40 6.0
35gb|AC025575.21| Homo sapiens 12 BAC RP11-934P3 (Roswell Park Can... 40 6.0
36gb|AC116665.1| Papio hamadryas chromosome , clone RP41-119J13, c... 40 6.0
37ref|XM_939705.1| PREDICTED: Homo sapiens similar to Homeobox eve... 40 6.0
38ref|XM_292968.5| PREDICTED: Homo sapiens similar to Homeobox eve... 40 6.0
39gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 6.0
40gb|AC016643.6|AC016643 Homo sapiens chromosome 5 clone RP11-480H... 40 6.0
41gb|AC079468.3|AC079468 Homo sapiens chromosome 5 clone RP11-403A... 40 6.0
42dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
43dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
44gb|AC097715.3| Homo sapiens BAC clone RP11-563A13 from 2, comple... 40 6.0
45gb|AC010359.5|AC010359 Homo sapiens chromosome 5 clone CTD-2033C... 40 6.0
46gb|AC022509.21|AC022509 Homo sapiens 12 BAC RP11-283G6 (Roswell ... 40 6.0
47gb|AC009336.13|AC009336 Homo sapiens chromosome 2, clone RP11-38... 40 6.0
48dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.0
49gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genom... 40 6.0
50dbj|AB124586.1| Pan troglodytes RBP4 gene for retinol binding pr... 40 6.0
51dbj|AK067347.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
52gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.0
53gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
54emb|CR762419.14| Zebrafish DNA sequence from clone CH211-247A18 ... 40 6.0
55emb|AL591469.9| Mouse DNA sequence from clone RP23-390D17 on chr... 40 6.0 
>emb|AL954317.8| Zebrafish DNA sequence from clone DKEY-251I8 in linkage group 1,
             complete sequence
          Length = 97165

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 103   gaagagaagaaaacgaaagaaa 124
             ||||||||||||||||||||||
Sbjct: 94739 gaagagaagaaaacgaaagaaa 94760
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>gb|AC165155.2| Mus musculus BAC clone RP23-293N22 from chromosome 14, complete
             sequence
          Length = 226292

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 99    ctcagaagagaagaaaacgaa 119
             |||||||||||||||||||||
Sbjct: 94995 ctcagaagagaagaaaacgaa 95015
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>gb|AC165272.2| Mus musculus BAC clone RP24-296O4 from chromosome 14, complete
            sequence
          Length = 178348

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 99   ctcagaagagaagaaaacgaa 119
            |||||||||||||||||||||
Sbjct: 2606 ctcagaagagaagaaaacgaa 2586
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>gb|AE011708.1| Xanthomonas axonopodis pv. citri str. 306,  section 86 of 469 of
           the complete genome
          Length = 13079

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 334 ccagctcgccgcgcgcgtgcccgcc 358
           ||||| |||||||||||||||||||
Sbjct: 813 ccagcacgccgcgcgcgtgcccgcc 789
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>gb|DQ408129.1| Peniophora nuda RNA polymerase II second largest subunit (rpb2)
           gene, partial cds
          Length = 1730

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 218 gacgagcgagacgtcctccacgacg 242
           |||||||||| ||||||||||||||
Sbjct: 318 gacgagcgagccgtcctccacgacg 294
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>gb|AY218500.1| Peniophora nuda strain FPL4756 RNA polymerase II subunit RPB2-like
           gene, partial sequence
          Length = 493

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 218 gacgagcgagacgtcctccacgacg 242
           |||||||||| ||||||||||||||
Sbjct: 189 gacgagcgagccgtcctccacgacg 165
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 395     ctgcgcccccgtggccgccgccacc 419
               |||||||||| ||||||||||||||
Sbjct: 7514801 ctgcgcccccttggccgccgccacc 7514825
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>dbj|AB020752.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTH16
          Length = 68098

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 104   aagagaagaaaacgaaagaaa 124
             |||||||||||||||||||||
Sbjct: 67282 aagagaagaaaacgaaagaaa 67262
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>emb|AL662960.3|OSJN00162 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0021F22,
             complete sequence
          Length = 181498

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 395   ctgcgcccccgtggccgccgccacc 419
             |||||||||| ||||||||||||||
Sbjct: 37274 ctgcgcccccttggccgccgccacc 37298
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>emb|AL353994.1|ATF17I14 Arabidopsis thaliana DNA chromosome 5, BAC clone F17I14 (ESSA
            project)
          Length = 92491

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 104  aagagaagaaaacgaaagaaa 124
            |||||||||||||||||||||
Sbjct: 2301 aagagaagaaaacgaaagaaa 2321
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>ref|XM_525966.1| PREDICTED: Pan troglodytes similar to Homeobox even-skipped homolog
            protein 2 (EVX-2) (LOC470585), mRNA
          Length = 2250

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 390  ggcccctgcgcccccgtggccgccgccaccac 421
            ||||||||||||||||  ||||||||| ||||
Sbjct: 2112 ggcccctgcgcccccgccgccgccgccgccac 2081
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>ref|XM_470372.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3053

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 402 cccgtggccgccgccaccac 421
           ||||||||||||||||||||
Sbjct: 250 cccgtggccgccgccaccac 269
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 337     gctcgccgcgcgcgtgcccgccct 360
               ||||||||||||| ||||||||||
Sbjct: 3323694 gctcgccgcgcgcctgcccgccct 3323717
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>gb|AC186367.2| Gallus gallus BAC clone TAM31-55N19 from chromosome 17, complete sequence
          Length = 181509

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 402    cccgtggccgccgccaccac 421
              ||||||||||||||||||||
Sbjct: 164640 cccgtggccgccgccaccac 164659
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>ref|XM_415487.1| PREDICTED: Gallus gallus similar to TBC1 domain family, member 13
            (LOC417204), mRNA
          Length = 3932

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 402  cccgtggccgccgccaccac 421
            ||||||||||||||||||||
Sbjct: 2786 cccgtggccgccgccaccac 2767
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>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete
             sequence
          Length = 130272

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   cccgtggccgccgccaccac 421
             ||||||||||||||||||||
Sbjct: 13852 cccgtggccgccgccaccac 13833
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>ref|XM_583872.2| PREDICTED: Bos taurus similar to RIKEN cDNA E130201N16, transcript
           variant 1 (LOC538952), mRNA
          Length = 1221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 257 gccgctgccgtcggccatgg 276
           ||||||||||||||||||||
Sbjct: 254 gccgctgccgtcggccatgg 235
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>ref|XM_865233.1| PREDICTED: Bos taurus similar to RIKEN cDNA E130201N16, transcript
           variant 2 (LOC538952), mRNA
          Length = 1466

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 257 gccgctgccgtcggccatgg 276
           ||||||||||||||||||||
Sbjct: 499 gccgctgccgtcggccatgg 480
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 337    gctcgccgcgcgcgtgcccgccct 360
              ||||||||||||| ||||||||||
Sbjct: 663335 gctcgccgcgcgcctgcccgccct 663312
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 402      cccgtggccgccgccaccac 421
                ||||||||||||||||||||
Sbjct: 35012951 cccgtggccgccgccaccac 35012932
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>gb|AC146163.3| Pan troglodytes BAC clone RP43-24D16 from 7, complete sequence
          Length = 162475

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     ataattcccttgagatctat 38
              ||||||||||||||||||||
Sbjct: 102963 ataattcccttgagatctat 102944
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>gb|AC007316.4| Homo sapiens BAC clone RP11-356B17 from 7, complete sequence
          Length = 106392

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    ataattcccttgagatctat 38
             ||||||||||||||||||||
Sbjct: 17342 ataattcccttgagatctat 17323
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>gb|AY027656.1| Bos taurus peri-attachment factor (P-AF) mRNA, partial sequence
          Length = 1673

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 257 gccgctgccgtcggccatgg 276
           ||||||||||||||||||||
Sbjct: 687 gccgctgccgtcggccatgg 668
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 325     ccgtgaacgccagctcgccgcgcg 348
               ||||| ||||||||||||||||||
Sbjct: 1855351 ccgtgcacgccagctcgccgcgcg 1855374
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>emb|AL390739.8| Human DNA sequence from clone RP11-157F14 on chromosome 13 Contains two
              CpG islands, complete sequence
          Length = 123887

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      tgaaacattttgaaataatt 24
              ||||||||||||||||||||
Sbjct: 111003 tgaaacattttgaaataatt 110984
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>emb|AL356214.20| Human DNA sequence from clone RP11-30E16 on chromosome 10 Contains the
             C10orf3 gene for chromosome 10 open reading frame 3, the
             RBP4 gene for retinol binding protein 4 (plasma), the 5'
             end of the PDE6C gene for phosphodiesterase 6C
             (cGMP-specific, cone, alpha prime), the GPR120 gene for G
             protein-coupled receptor 120 and three CpG islands,
             complete sequence
          Length = 163964

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 105   agagaagaaaacgaaagaaatgtgaaat 132
             ||||||||||| |||||||| |||||||
Sbjct: 68200 agagaagaaaaagaaagaaaagtgaaat 68173
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>emb|AL163534.9| Human DNA sequence from clone RP11-207D10 on chromosome 13, complete
             sequence
          Length = 15302

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   agagaagaaaacgaaagaaa 124
             ||||||||||||||||||||
Sbjct: 12574 agagaagaaaacgaaagaaa 12593
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>emb|AL157821.14| Human DNA sequence from clone RP11-93M14 on chromosome 13 Contains part
             of the GPC5 gene for glypican 5, complete sequence
          Length = 138781

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     atgaaacattttgaaataattccc 27
             |||||||||||| |||||||||||
Sbjct: 80990 atgaaacattttaaaataattccc 80967
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>gb|AC010196.5| Homo sapiens 12 BAC RP11-202H2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 163246

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      tgaaacattttgaaataatt 24
              ||||||||||||||||||||
Sbjct: 156984 tgaaacattttgaaataatt 156965
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>emb|AL078594.36|HSDJ293L8 Human DNA sequence from clone RP1-293L8 on chromosome 6q22.2-22.33
              Contains the 3' part of a novel gene, the 5' part of a
              novel gene, the HEY2 gene for hairy/enhancer-of-split
              related with YRPW motif 2, a novel gene, the 5' part of the
              gene for endoplasmic reticulum associated protein 140 kDa
              (ERAP140) (similar to nucleolar protein C7B) and four
              putative CpG islands, complete sequence
          Length = 164808

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     ataattcccttgagatctat 38
              ||||||||||||||||||||
Sbjct: 101761 ataattcccttgagatctat 101742
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>ref|XM_967215.1| PREDICTED: Tribolium castaneum similar to CG17816-PB, isoform B
           (LOC661025), mRNA
          Length = 2232

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 401 ccccgtggccgccgccaccacgcg 424
           |||||||||||||||| |||||||
Sbjct: 574 ccccgtggccgccgccgccacgcg 551
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>gb|AC011596.27| Homo sapiens 12 BAC RP11-117B7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 102500

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 93    atgtttctcagaagagaagaaaac 116
             ||||||||||||| ||||||||||
Sbjct: 64876 atgtttctcagaacagaagaaaac 64853
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 337    gctcgccgcgcgcgtgcccgccct 360
              ||||||||||||| ||||||||||
Sbjct: 471950 gctcgccgcgcgcctgcccgccct 471927
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>emb|AJ278706.1|PMI278706 Penicillium minioluteum dexC gene for putative alpha glucosidase
          Length = 2045

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 16  gaaataattcccttgagatc 35
           ||||||||||||||||||||
Sbjct: 161 gaaataattcccttgagatc 142
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>gb|AC025575.21| Homo sapiens 12 BAC RP11-934P3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 158531

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   aagagaagaaaacgaaagaa 123
             ||||||||||||||||||||
Sbjct: 75413 aagagaagaaaacgaaagaa 75432
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>gb|AC116665.1| Papio hamadryas chromosome , clone RP41-119J13, complete sequence
          Length = 176602

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 390   ggcccctgcgcccccgtggccgccgccaccac 421
             ||||||||||||||||  ||||||||| ||||
Sbjct: 20987 ggcccctgcgcccccgccgccgccgccgccac 21018
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>ref|XM_939705.1| PREDICTED: Homo sapiens similar to Homeobox even-skipped homolog
            protein 2 (EVX-2) (LOC650617), mRNA
          Length = 1611

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 390  ggcccctgcgcccccgtggccgccgccaccac 421
            |||||| |||||||||  ||||||||||||||
Sbjct: 1473 ggccccggcgcccccgccgccgccgccaccac 1442
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>ref|XM_292968.5| PREDICTED: Homo sapiens similar to Homeobox even-skipped homolog
            protein 2 (EVX-2) (LOC344191), mRNA
          Length = 1611

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 390  ggcccctgcgcccccgtggccgccgccaccac 421
            |||||| |||||||||  ||||||||||||||
Sbjct: 1473 ggccccggcgcccccgccgccgccgccaccac 1442
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 392     cccctgcgcccccgtggccgccgc 415
               |||| |||||||||||||||||||
Sbjct: 3147294 ccccggcgcccccgtggccgccgc 3147317
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>gb|AC016643.6|AC016643 Homo sapiens chromosome 5 clone RP11-480H11, complete sequence
          Length = 179969

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 101    cagaagagaagaaaacgaaagaaa 124
              |||||||||||||||| |||||||
Sbjct: 170396 cagaagagaagaaaacaaaagaaa 170419
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>gb|AC079468.3|AC079468 Homo sapiens chromosome 5 clone RP11-403A7, complete sequence
          Length = 167656

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 101  cagaagagaagaaaacgaaagaaa 124
            |||||||||||||||| |||||||
Sbjct: 4559 cagaagagaagaaaacaaaagaaa 4536
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 394      cctgcgcccccgtggccgccgcca 417
                |||||| |||||||||||||||||
Sbjct: 11855906 cctgcggccccgtggccgccgcca 11855929
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 402      cccgtggccgccgccaccac 421
                ||||||||||||||||||||
Sbjct: 35103023 cccgtggccgccgccaccac 35103004
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>gb|AC097715.3| Homo sapiens BAC clone RP11-563A13 from 2, complete sequence
          Length = 143642

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 17     aaataattcccttgagatctattc 40
              ||||||||||||||||||| ||||
Sbjct: 118871 aaataattcccttgagatccattc 118848
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>gb|AC010359.5|AC010359 Homo sapiens chromosome 5 clone CTD-2033C11, complete sequence
          Length = 204843

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 101    cagaagagaagaaaacgaaagaaa 124
              |||||||||||||||| |||||||
Sbjct: 181655 cagaagagaagaaaacaaaagaaa 181632
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>gb|AC022509.21|AC022509 Homo sapiens 12 BAC RP11-283G6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 204228

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 104    aagagaagaaaacgaaagaaatgtgaaatgtt 135
              |||||||||||| ||| || ||||||||||||
Sbjct: 106813 aagagaagaaaaggaaggatatgtgaaatgtt 106782
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>gb|AC009336.13|AC009336 Homo sapiens chromosome 2, clone RP11-387A1, complete sequence
          Length = 175667

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 390   ggcccctgcgcccccgtggccgccgccaccac 421
             |||||| |||||||||  ||||||||||||||
Sbjct: 64234 ggccccggcgcccccgccgccgccgccaccac 64265
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 334     ccagctcgccgcgcgcgtgc 353
               ||||||||||||||||||||
Sbjct: 3841673 ccagctcgccgcgcgcgtgc 3841654
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>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence,
            complete sequence
          Length = 171376

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 402  cccgtggccgccgccaccac 421
            ||||||||||||||||||||
Sbjct: 2529 cccgtggccgccgccaccac 2548
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>dbj|AB124586.1| Pan troglodytes RBP4 gene for retinol binding protein4, complete cds
          Length = 173042

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 105    agagaagaaaacgaaagaaatgtgaaat 132
              ||||||||||| |||||||| |||||||
Sbjct: 162057 agagaagaaaaagaaagaaaagtgaaat 162084
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>dbj|AK067347.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106E16, full
           insert sequence
          Length = 3325

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 402 cccgtggccgccgccaccac 421
           ||||||||||||||||||||
Sbjct: 523 cccgtggccgccgccaccac 542
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    ccagctcgccgcgcgcgtgc 353
              ||||||||||||||||||||
Sbjct: 965408 ccagctcgccgcgcgcgtgc 965389
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 394      cctgcgcccccgtggccgccgcca 417
                |||||| |||||||||||||||||
Sbjct: 11855577 cctgcggccccgtggccgccgcca 11855600
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>emb|CR762419.14| Zebrafish DNA sequence from clone CH211-247A18 in linkage group 12,
             complete sequence
          Length = 152153

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 104   aagagaagaaaacgaaagaaatgt 127
             |||||||||||| |||||||||||
Sbjct: 17097 aagagaagaaaaagaaagaaatgt 17074
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>emb|AL591469.9| Mouse DNA sequence from clone RP23-390D17 on chromosome 11, complete
              sequence
          Length = 168981

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    agaagagaagaaaacgaaag 121
              ||||||||||||||||||||
Sbjct: 137011 agaagagaagaaaacgaaag 136992


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,757,681
Number of Sequences: 3902068
Number of extensions: 3757681
Number of successful extensions: 94643
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93489
Number of HSP's gapped (non-prelim): 1154
length of query: 444
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 422
effective length of database: 17,147,199,772
effective search space: 7236118303784
effective search space used: 7236118303784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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