Clone Name | rbart55g12 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_593416.2| PREDICTED: Bos taurus similar to stromal antigen 3 (LOC515399), partial mRNA Length = 3164 Score = 42.1 bits (21), Expect = 0.27 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 acagattgagcagctgcacca 68 ||||||||||||||||||||| Sbjct: 1719 acagattgagcagctgcacca 1739
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 42.1 bits (21), Expect = 0.27 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 aaaggaacagattgagcagct 62 ||||||||||||||||||||| Sbjct: 4032147 aaaggaacagattgagcagct 4032127
>gb|AC116999.2| Mus musculus BAC clone RP23-28L10 from 19, complete sequence Length = 209671 Score = 42.1 bits (21), Expect = 0.27 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 catgaatatacataaaaggaa 48 ||||||||||||||||||||| Sbjct: 128297 catgaatatacataaaaggaa 128277
>gb|AC020892.7|AC020892 Homo sapiens chromosome 15 clone RP11-313P18 map 15q21.2, complete sequence Length = 186253 Score = 42.1 bits (21), Expect = 0.27 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 catatacctcatgaatataca 39 ||||||||||||||||||||| Sbjct: 124811 catatacctcatgaatataca 124791
>emb|CT030030.12| Mouse DNA sequence from clone RP23-123J19 on chromosome 12, complete sequence Length = 201738 Score = 42.1 bits (21), Expect = 0.27 Identities = 24/25 (96%) Strand = Plus / Plus Query: 34 tatacataaaaggaacagattgagc 58 |||| |||||||||||||||||||| Sbjct: 103112 tatatataaaaggaacagattgagc 103136
>dbj|AP003059.2| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2005H7, complete sequence Length = 89000 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 tatacctcatgaatatacataaaa 44 |||||||||||||| ||||||||| Sbjct: 19152 tatacctcatgaatgtacataaaa 19175
>gb|AC158219.4| Mus musculus chromosome 8, clone RP23-189N10, complete sequence Length = 215819 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 atgaatatacataaaaggaa 48 |||||||||||||||||||| Sbjct: 63341 atgaatatacataaaaggaa 63322
>gb|AC123699.10| Mus musculus chromosome 5, clone RP23-333M22, complete sequence Length = 167971 Score = 38.2 bits (19), Expect = 4.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 49 cagattgagcagctgcaccatgc 71 |||| |||||||||||||||||| Sbjct: 64069 cagaatgagcagctgcaccatgc 64047
>emb|CT025649.7| Mouse DNA sequence from clone RP24-345B5 on chromosome 14, complete sequence Length = 175794 Score = 38.2 bits (19), Expect = 4.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 aatatacataaaaggaaca 50 ||||||||||||||||||| Sbjct: 15875 aatatacataaaaggaaca 15893
>gb|AC147477.1| Pan troglodytes BAC clone CH251-483E9 from Y, complete sequence Length = 213500 Score = 38.2 bits (19), Expect = 4.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 20 atatacctcatgaatatacataa 42 ||||||||||||||||| ||||| Sbjct: 145824 atatacctcatgaatatgcataa 145802
>gb|AC092485.6| Homo sapiens BAC clone RP11-272P13 from 7, complete sequence Length = 121142 Score = 38.2 bits (19), Expect = 4.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 catatacctcatgaatata 37 ||||||||||||||||||| Sbjct: 38623 catatacctcatgaatata 38605
>gb|AC154556.2| Mus musculus BAC clone RP23-423F3 from chromosome 14, complete sequence Length = 189092 Score = 38.2 bits (19), Expect = 4.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 aatatacataaaaggaaca 50 ||||||||||||||||||| Sbjct: 16987 aatatacataaaaggaaca 16969
>ref|XM_780691.1| PREDICTED: Strongylocentrotus purpuratus similar to Ankyrin-1 (Erythrocyte ankyrin) (Ankyrin R) (LOC580644), mRNA Length = 4977 Score = 38.2 bits (19), Expect = 4.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 attgagcagctgcaccatg 70 ||||||||||||||||||| Sbjct: 2605 attgagcagctgcaccatg 2587
>gb|AC025031.30| Homo sapiens 12 BAC RP11-474P2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 223675 Score = 38.2 bits (19), Expect = 4.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 catatacctcatgaatata 37 ||||||||||||||||||| Sbjct: 85461 catatacctcatgaatata 85479
>dbj|BS000618.1| Pan troglodytes chromosome Y clone:PTB-428B15, complete sequences Length = 103410 Score = 38.2 bits (19), Expect = 4.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 20 atatacctcatgaatatacataa 42 ||||||||||||||||| ||||| Sbjct: 41427 atatacctcatgaatatgcataa 41449
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 38.2 bits (19), Expect = 4.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 20 atatacctcatgaatatacataa 42 ||||||||||||||||| ||||| Sbjct: 14902825 atatacctcatgaatatgcataa 14902803
>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 Length = 1725576 Score = 38.2 bits (19), Expect = 4.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 19 catatacctcatgaatatacata 41 ||||||| ||||||||||||||| Sbjct: 36460 catatacttcatgaatatacata 36438
>dbj|AK141196.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230098J12 product:purinergic receptor P2X, ligand-gated ion channel, 2, full insert sequence Length = 1878 Score = 38.2 bits (19), Expect = 4.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 49 cagattgagcagctgcaccatgc 71 |||| |||||||||||||||||| Sbjct: 201 cagaatgagcagctgcaccatgc 179
>dbj|AK158334.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930104I12 product:purinergic receptor P2X, ligand-gated ion channel, 2, full insert sequence Length = 1896 Score = 38.2 bits (19), Expect = 4.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 49 cagattgagcagctgcaccatgc 71 |||| |||||||||||||||||| Sbjct: 184 cagaatgagcagctgcaccatgc 162
>gb|AC010235.7| Homo sapiens chromosome 5 clone CTC-339D2, complete sequence Length = 228600 Score = 38.2 bits (19), Expect = 4.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 catatacctcatgaatata 37 ||||||||||||||||||| Sbjct: 161275 catatacctcatgaatata 161293
>gb|AC154612.2| Mus musculus BAC clone RP23-338A21 from chromosome 14, complete sequence Length = 197282 Score = 38.2 bits (19), Expect = 4.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 aatatacataaaaggaaca 50 ||||||||||||||||||| Sbjct: 83376 aatatacataaaaggaaca 83394
>emb|CR383657.1| Human chromosome 14 DNA sequence BAC R-491G9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176745 Score = 38.2 bits (19), Expect = 4.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 aaaaggaacagattgagca 59 ||||||||||||||||||| Sbjct: 47042 aaaaggaacagattgagca 47024
>emb|CR383656.1| Human chromosome 14 DNA sequence BAC R-536C10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 184906 Score = 38.2 bits (19), Expect = 4.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 aaaaggaacagattgagca 59 ||||||||||||||||||| Sbjct: 38990 aaaaggaacagattgagca 39008
>gb|AC008546.6|AC008546 Homo sapiens chromosome 5 clone CTC-501K1, complete sequence Length = 205954 Score = 38.2 bits (19), Expect = 4.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 catatacctcatgaatata 37 ||||||||||||||||||| Sbjct: 70438 catatacctcatgaatata 70456
>gb|AC009494.2|AC009494 Homo sapiens BAC clone RP11-450B24 from Y, complete sequence Length = 188314 Score = 38.2 bits (19), Expect = 4.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 20 atatacctcatgaatatacataa 42 ||||||||||||||||| ||||| Sbjct: 153350 atatacctcatgaatatgcataa 153372
>gb|AY044240.2| Mus musculus P2X2a purinergic receptor (P2x2) mRNA, complete cds Length = 2097 Score = 38.2 bits (19), Expect = 4.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 49 cagattgagcagctgcaccatgc 71 |||| |||||||||||||||||| Sbjct: 418 cagaatgagcagctgcaccatgc 396
>dbj|AP001669.1| Homo sapiens genomic DNA, chromosome 21q, section 13/105 Length = 340000 Score = 38.2 bits (19), Expect = 4.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 catatacctcatgaatata 37 ||||||||||||||||||| Sbjct: 294642 catatacctcatgaatata 294660
>ref|NM_153400.2| Mus musculus purinergic receptor P2X, ligand-gated ion channel, 2 (P2rx2), mRNA Length = 2097 Score = 38.2 bits (19), Expect = 4.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 49 cagattgagcagctgcaccatgc 71 |||| |||||||||||||||||| Sbjct: 418 cagaatgagcagctgcaccatgc 396
>dbj|AB094664.1| Mus musculus mRNA for P2X2b purinergic receptor, complete cds Length = 1634 Score = 38.2 bits (19), Expect = 4.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 49 cagattgagcagctgcaccatgc 71 |||| |||||||||||||||||| Sbjct: 162 cagaatgagcagctgcaccatgc 140
>dbj|AB094663.1| Mus musculus mRNA for P2X2e purinergic receptor, complete cds Length = 1571 Score = 38.2 bits (19), Expect = 4.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 49 cagattgagcagctgcaccatgc 71 |||| |||||||||||||||||| Sbjct: 162 cagaatgagcagctgcaccatgc 140
>gb|AC169384.2| Mus musculus chromosome 5, clone RP23-231C16, complete sequence Length = 204569 Score = 38.2 bits (19), Expect = 4.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 49 cagattgagcagctgcaccatgc 71 |||| |||||||||||||||||| Sbjct: 197693 cagaatgagcagctgcaccatgc 197671
>emb|AL929600.3|CNS08CCF Human chromosome 14 DNA sequence BAC R-254P21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 148065 Score = 38.2 bits (19), Expect = 4.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 aaaaggaacagattgagca 59 ||||||||||||||||||| Sbjct: 129240 aaaaggaacagattgagca 129222
>emb|AL161804.4|CNS01RHL Human chromosome 14 DNA sequence BAC R-409I10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 151853 Score = 38.2 bits (19), Expect = 4.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 64 caccatgcagtatcactcataca 86 |||||||||||||||| |||||| Sbjct: 87049 caccatgcagtatcacgcataca 87071
>dbj|AP000968.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B886D23, LL56-APP region, complete sequence Length = 44928 Score = 38.2 bits (19), Expect = 4.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 catatacctcatgaatata 37 ||||||||||||||||||| Sbjct: 15486 catatacctcatgaatata 15504
>dbj|AP000536.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region, clone:c64C8 Length = 39668 Score = 38.2 bits (19), Expect = 4.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 aaaaggaacagattgagca 59 ||||||||||||||||||| Sbjct: 960 aaaaggaacagattgagca 942
>dbj|AP000535.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region, clone:c58F10 Length = 39151 Score = 38.2 bits (19), Expect = 4.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 aaaaggaacagattgagca 59 ||||||||||||||||||| Sbjct: 34900 aaaaggaacagattgagca 34882 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 937,605 Number of Sequences: 3902068 Number of extensions: 937605 Number of successful extensions: 72814 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72735 Number of HSP's gapped (non-prelim): 79 length of query: 97 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 76 effective length of database: 17,151,101,840 effective search space: 1303483739840 effective search space used: 1303483739840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)