ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_593416.2| PREDICTED: Bos taurus similar to stromal antige... 42 0.27
2gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 42 0.27
3gb|AC116999.2| Mus musculus BAC clone RP23-28L10 from 19, comple... 42 0.27
4gb|AC020892.7|AC020892 Homo sapiens chromosome 15 clone RP11-313... 42 0.27
5emb|CT030030.12| Mouse DNA sequence from clone RP23-123J19 on ch... 42 0.27
6dbj|AP003059.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 1.1
7gb|AC158219.4| Mus musculus chromosome 8, clone RP23-189N10, com... 40 1.1
8gb|AC123699.10| Mus musculus chromosome 5, clone RP23-333M22, co... 38 4.3
9emb|CT025649.7| Mouse DNA sequence from clone RP24-345B5 on chro... 38 4.3
10gb|AC147477.1| Pan troglodytes BAC clone CH251-483E9 from Y, com... 38 4.3
11gb|AC092485.6| Homo sapiens BAC clone RP11-272P13 from 7, comple... 38 4.3
12gb|AC154556.2| Mus musculus BAC clone RP23-423F3 from chromosome... 38 4.3
13ref|XM_780691.1| PREDICTED: Strongylocentrotus purpuratus simila... 38 4.3
14gb|AC025031.30| Homo sapiens 12 BAC RP11-474P2 (Roswell Park Can... 38 4.3
15dbj|BS000618.1| Pan troglodytes chromosome Y clone:PTB-428B15, c... 38 4.3
16gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 38 4.3
17dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 38 4.3
18dbj|AK141196.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 38 4.3
19dbj|AK158334.1| Mus musculus adult inner ear cDNA, RIKEN full-le... 38 4.3
20gb|AC010235.7| Homo sapiens chromosome 5 clone CTC-339D2, comple... 38 4.3
21gb|AC154612.2| Mus musculus BAC clone RP23-338A21 from chromosom... 38 4.3
22emb|CR383657.1| Human chromosome 14 DNA sequence BAC R-491G9 of ... 38 4.3
23emb|CR383656.1| Human chromosome 14 DNA sequence BAC R-536C10 of... 38 4.3
24gb|AC008546.6|AC008546 Homo sapiens chromosome 5 clone CTC-501K1... 38 4.3
25gb|AC009494.2|AC009494 Homo sapiens BAC clone RP11-450B24 from Y... 38 4.3
26gb|AY044240.2| Mus musculus P2X2a purinergic receptor (P2x2) mRN... 38 4.3
27dbj|AP001669.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 4.3
28ref|NM_153400.2| Mus musculus purinergic receptor P2X, ligand-ga... 38 4.3
29dbj|AB094664.1| Mus musculus mRNA for P2X2b purinergic receptor,... 38 4.3
30dbj|AB094663.1| Mus musculus mRNA for P2X2e purinergic receptor,... 38 4.3
31gb|AC169384.2| Mus musculus chromosome 5, clone RP23-231C16, com... 38 4.3
32emb|AL929600.3|CNS08CCF Human chromosome 14 DNA sequence BAC R-2... 38 4.3
33emb|AL161804.4|CNS01RHL Human chromosome 14 DNA sequence BAC R-4... 38 4.3
34dbj|AP000968.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 38 4.3
35dbj|AP000536.1| Homo sapiens genomic DNA, chromosome 22q11.2, Ca... 38 4.3
36dbj|AP000535.1| Homo sapiens genomic DNA, chromosome 22q11.2, Ca... 38 4.3

>ref|XM_593416.2| PREDICTED: Bos taurus similar to stromal antigen 3 (LOC515399),
            partial mRNA
          Length = 3164

 Score = 42.1 bits (21), Expect = 0.27
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 48   acagattgagcagctgcacca 68
            |||||||||||||||||||||
Sbjct: 1719 acagattgagcagctgcacca 1739



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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 42.1 bits (21), Expect = 0.27
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 42      aaaggaacagattgagcagct 62
               |||||||||||||||||||||
Sbjct: 4032147 aaaggaacagattgagcagct 4032127



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>gb|AC116999.2| Mus musculus BAC clone RP23-28L10 from 19, complete sequence
          Length = 209671

 Score = 42.1 bits (21), Expect = 0.27
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     catgaatatacataaaaggaa 48
              |||||||||||||||||||||
Sbjct: 128297 catgaatatacataaaaggaa 128277



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>gb|AC020892.7|AC020892 Homo sapiens chromosome 15 clone RP11-313P18 map 15q21.2, complete
              sequence
          Length = 186253

 Score = 42.1 bits (21), Expect = 0.27
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 19     catatacctcatgaatataca 39
              |||||||||||||||||||||
Sbjct: 124811 catatacctcatgaatataca 124791



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>emb|CT030030.12| Mouse DNA sequence from clone RP23-123J19 on chromosome 12, complete
              sequence
          Length = 201738

 Score = 42.1 bits (21), Expect = 0.27
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 34     tatacataaaaggaacagattgagc 58
              |||| ||||||||||||||||||||
Sbjct: 103112 tatatataaaaggaacagattgagc 103136



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>dbj|AP003059.2| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2005H7, complete
             sequence
          Length = 89000

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 21    tatacctcatgaatatacataaaa 44
             |||||||||||||| |||||||||
Sbjct: 19152 tatacctcatgaatgtacataaaa 19175



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>gb|AC158219.4| Mus musculus chromosome 8, clone RP23-189N10, complete sequence
          Length = 215819

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    atgaatatacataaaaggaa 48
             ||||||||||||||||||||
Sbjct: 63341 atgaatatacataaaaggaa 63322



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>gb|AC123699.10| Mus musculus chromosome 5, clone RP23-333M22, complete sequence
          Length = 167971

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 49    cagattgagcagctgcaccatgc 71
             |||| ||||||||||||||||||
Sbjct: 64069 cagaatgagcagctgcaccatgc 64047



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>emb|CT025649.7| Mouse DNA sequence from clone RP24-345B5 on chromosome 14, complete
             sequence
          Length = 175794

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    aatatacataaaaggaaca 50
             |||||||||||||||||||
Sbjct: 15875 aatatacataaaaggaaca 15893



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>gb|AC147477.1| Pan troglodytes BAC clone CH251-483E9 from Y, complete sequence
          Length = 213500

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 20     atatacctcatgaatatacataa 42
              ||||||||||||||||| |||||
Sbjct: 145824 atatacctcatgaatatgcataa 145802



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>gb|AC092485.6| Homo sapiens BAC clone RP11-272P13 from 7, complete sequence
          Length = 121142

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    catatacctcatgaatata 37
             |||||||||||||||||||
Sbjct: 38623 catatacctcatgaatata 38605



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>gb|AC154556.2| Mus musculus BAC clone RP23-423F3 from chromosome 14, complete sequence
          Length = 189092

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 32    aatatacataaaaggaaca 50
             |||||||||||||||||||
Sbjct: 16987 aatatacataaaaggaaca 16969



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>ref|XM_780691.1| PREDICTED: Strongylocentrotus purpuratus similar to Ankyrin-1
            (Erythrocyte ankyrin) (Ankyrin R) (LOC580644), mRNA
          Length = 4977

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 52   attgagcagctgcaccatg 70
            |||||||||||||||||||
Sbjct: 2605 attgagcagctgcaccatg 2587



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>gb|AC025031.30| Homo sapiens 12 BAC RP11-474P2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 223675

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 19    catatacctcatgaatata 37
             |||||||||||||||||||
Sbjct: 85461 catatacctcatgaatata 85479



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>dbj|BS000618.1| Pan troglodytes chromosome Y clone:PTB-428B15, complete sequences
          Length = 103410

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 20    atatacctcatgaatatacataa 42
             ||||||||||||||||| |||||
Sbjct: 41427 atatacctcatgaatatgcataa 41449



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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 20       atatacctcatgaatatacataa 42
                ||||||||||||||||| |||||
Sbjct: 14902825 atatacctcatgaatatgcataa 14902803



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>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038
          Length = 1725576

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 19    catatacctcatgaatatacata 41
             ||||||| |||||||||||||||
Sbjct: 36460 catatacttcatgaatatacata 36438



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>dbj|AK141196.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:C230098J12 product:purinergic
           receptor P2X, ligand-gated ion channel, 2, full insert
           sequence
          Length = 1878

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 49  cagattgagcagctgcaccatgc 71
           |||| ||||||||||||||||||
Sbjct: 201 cagaatgagcagctgcaccatgc 179



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>dbj|AK158334.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched
           library, clone:F930104I12 product:purinergic receptor
           P2X, ligand-gated ion channel, 2, full insert sequence
          Length = 1896

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 49  cagattgagcagctgcaccatgc 71
           |||| ||||||||||||||||||
Sbjct: 184 cagaatgagcagctgcaccatgc 162



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>gb|AC010235.7| Homo sapiens chromosome 5 clone CTC-339D2, complete sequence
          Length = 228600

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 19     catatacctcatgaatata 37
              |||||||||||||||||||
Sbjct: 161275 catatacctcatgaatata 161293



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>gb|AC154612.2| Mus musculus BAC clone RP23-338A21 from chromosome 14, complete
             sequence
          Length = 197282

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    aatatacataaaaggaaca 50
             |||||||||||||||||||
Sbjct: 83376 aatatacataaaaggaaca 83394



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>emb|CR383657.1| Human chromosome 14 DNA sequence BAC R-491G9 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176745

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    aaaaggaacagattgagca 59
             |||||||||||||||||||
Sbjct: 47042 aaaaggaacagattgagca 47024



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>emb|CR383656.1| Human chromosome 14 DNA sequence BAC R-536C10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 184906

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    aaaaggaacagattgagca 59
             |||||||||||||||||||
Sbjct: 38990 aaaaggaacagattgagca 39008



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>gb|AC008546.6|AC008546 Homo sapiens chromosome 5 clone CTC-501K1, complete sequence
          Length = 205954

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 19    catatacctcatgaatata 37
             |||||||||||||||||||
Sbjct: 70438 catatacctcatgaatata 70456



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>gb|AC009494.2|AC009494 Homo sapiens BAC clone RP11-450B24 from Y, complete sequence
          Length = 188314

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 20     atatacctcatgaatatacataa 42
              ||||||||||||||||| |||||
Sbjct: 153350 atatacctcatgaatatgcataa 153372



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>gb|AY044240.2| Mus musculus P2X2a purinergic receptor (P2x2) mRNA, complete cds
          Length = 2097

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 49  cagattgagcagctgcaccatgc 71
           |||| ||||||||||||||||||
Sbjct: 418 cagaatgagcagctgcaccatgc 396



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>dbj|AP001669.1| Homo sapiens genomic DNA, chromosome 21q, section 13/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 19     catatacctcatgaatata 37
              |||||||||||||||||||
Sbjct: 294642 catatacctcatgaatata 294660



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>ref|NM_153400.2| Mus musculus purinergic receptor P2X, ligand-gated ion channel, 2
           (P2rx2), mRNA
          Length = 2097

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 49  cagattgagcagctgcaccatgc 71
           |||| ||||||||||||||||||
Sbjct: 418 cagaatgagcagctgcaccatgc 396



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>dbj|AB094664.1| Mus musculus mRNA for P2X2b purinergic receptor, complete cds
          Length = 1634

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 49  cagattgagcagctgcaccatgc 71
           |||| ||||||||||||||||||
Sbjct: 162 cagaatgagcagctgcaccatgc 140



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>dbj|AB094663.1| Mus musculus mRNA for P2X2e purinergic receptor, complete cds
          Length = 1571

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 49  cagattgagcagctgcaccatgc 71
           |||| ||||||||||||||||||
Sbjct: 162 cagaatgagcagctgcaccatgc 140



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>gb|AC169384.2| Mus musculus chromosome 5, clone RP23-231C16, complete sequence
          Length = 204569

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 49     cagattgagcagctgcaccatgc 71
              |||| ||||||||||||||||||
Sbjct: 197693 cagaatgagcagctgcaccatgc 197671



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>emb|AL929600.3|CNS08CCF Human chromosome 14 DNA sequence BAC R-254P21 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 148065

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     aaaaggaacagattgagca 59
              |||||||||||||||||||
Sbjct: 129240 aaaaggaacagattgagca 129222



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>emb|AL161804.4|CNS01RHL Human chromosome 14 DNA sequence BAC R-409I10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 151853

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 64    caccatgcagtatcactcataca 86
             |||||||||||||||| ||||||
Sbjct: 87049 caccatgcagtatcacgcataca 87071



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>dbj|AP000968.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B886D23,
             LL56-APP region, complete sequence
          Length = 44928

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 19    catatacctcatgaatata 37
             |||||||||||||||||||
Sbjct: 15486 catatacctcatgaatata 15504



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>dbj|AP000536.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome
           region, clone:c64C8
          Length = 39668

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 41  aaaaggaacagattgagca 59
           |||||||||||||||||||
Sbjct: 960 aaaaggaacagattgagca 942



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>dbj|AP000535.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
             clone:c58F10
          Length = 39151

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    aaaaggaacagattgagca 59
             |||||||||||||||||||
Sbjct: 34900 aaaaggaacagattgagca 34882


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 937,605
Number of Sequences: 3902068
Number of extensions: 937605
Number of successful extensions: 72814
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72735
Number of HSP's gapped (non-prelim): 79
length of query: 97
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 76
effective length of database: 17,151,101,840
effective search space: 1303483739840
effective search space used: 1303483739840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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