ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart55g11 |
|---|---|
| Clone Library Name | barley_pub |
>PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (TAT-binding| protein homolog 2) Length = 448 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/32 (65%), Positives = 21/32 (65%) Frame = -2 Query: 469 ERRMKVTHADFXXXXXXXXXXXKEGVPEGLYM 374 ERRMKVTHADF KEGVPEGLYM Sbjct: 417 ERRMKVTHADFKKAKEKVMFKKKEGVPEGLYM 448
>PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 34.7 bits (78), Expect = 0.13 Identities = 16/32 (50%), Positives = 18/32 (56%) Frame = -2 Query: 469 ERRMKVTHADFXXXXXXXXXXXKEGVPEGLYM 374 ERRMKVT+ DF EG PEGLY+ Sbjct: 409 ERRMKVTNEDFKKSKENFLYKKTEGTPEGLYL 440
>PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)| Length = 439 Score = 34.7 bits (78), Expect = 0.13 Identities = 17/32 (53%), Positives = 19/32 (59%) Frame = -2 Query: 469 ERRMKVTHADFXXXXXXXXXXXKEGVPEGLYM 374 ERRMKVT+ DF KEG PEGLY+ Sbjct: 408 ERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 439
>PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 34.3 bits (77), Expect = 0.16 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -2 Query: 469 ERRMKVTHADFXXXXXXXXXXXKEGVPEGLYM 374 ERRMKVT+ DF +EG PEGLY+ Sbjct: 409 ERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440
>PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 34.3 bits (77), Expect = 0.16 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -2 Query: 469 ERRMKVTHADFXXXXXXXXXXXKEGVPEGLYM 374 ERRMKVT+ DF +EG PEGLY+ Sbjct: 409 ERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440
>PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 34.3 bits (77), Expect = 0.16 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -2 Query: 469 ERRMKVTHADFXXXXXXXXXXXKEGVPEGLYM 374 ERRMKVT+ DF +EG PEGLY+ Sbjct: 409 ERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440
>KPK2_PLAFK (Q02595) Probable serine/threonine-protein kinase 2 (EC 2.7.11.1)| Length = 510 Score = 30.8 bits (68), Expect = 1.8 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 8/58 (13%) Frame = +3 Query: 216 YNKLFNYPTIQA-------KKRLQTNLRLSSKPG-NISHDTKYIITTQCCSGSEDRCT 365 +N L YP + KK ++ ++ ++K N S K II CC +DRCT Sbjct: 297 FNILCGYPPFRGNNVKEIFKKNMRCHISFNTKHWINKSESVKEIILWMCCKNPDDRCT 354
>FETA_CHICK (P84407) Alpha-fetoprotein precursor (Alpha-fetoglobulin)| (Alpha-1-fetoprotein) Length = 615 Score = 30.4 bits (67), Expect = 2.4 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Frame = +1 Query: 82 FAQHQHMLPGMNLKEAPECHGFADLPLRFKLMIQYFERKASTDRST--TNYSIIQPFRRR 255 +++H+H LPG + E H F P + I Y E RS + +++ + FRR+ Sbjct: 158 YSEHRHSLPGYFIYEVSRRHPFLYAPTILSVAIHYDEMMKDCCRSAEDSTHNLEECFRRQ 217
>KAIC_SYNLI (Q8GGL1) Circadian clock protein kinase kaiC (EC 2.7.11.1)| Length = 541 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = +1 Query: 172 LMIQYFERKASTDRSTTNYSI-IQPFRRRKGYKQICAYPPNQGI 300 ++ Y E +A R+ +++ I ++ F R+ K ICAYP + G+ Sbjct: 334 ILFAYEESRAQLSRNASSWGIDLEEFERQGLLKIICAYPESAGL 377
>PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4| Length = 443 Score = 28.9 bits (63), Expect = 6.9 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = -2 Query: 469 ERRMKVTHADFXXXXXXXXXXXKEGVPEGLYM 374 ERRM+VT DF KEG PE LY+ Sbjct: 412 ERRMRVTMEDFQKSKENVLYRKKEGAPEELYL 443
>POLG_EMCV (P03304) Genome polyprotein [Contains: Coat protein VP4 (Rho); Coat| protein VP2 (Beta); Coat protein VP3 (Gamma); Coat protein VP1 (Alpha); Picornain 2A (EC 3.4.22.29) (Core protein P2A) (G); Core protein P2B (I); Core protein P2C (C); Core pro Length = 2290 Score = 28.9 bits (63), Expect = 6.9 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +2 Query: 233 LSNHSGEEKVTNKFAPILQTREYIPRYQ-IYYHYTMLFW 346 L+ HSG+++ FAP + +P ++ + Y + LFW Sbjct: 2252 LAVHSGKQEYDRLFAPFREVGVVVPSFESVEYRWRSLFW 2290
>MASS1_MOUSE (Q8VHN7) Monogenic audiogenic seizure susceptibility protein 1| precursor (Very large G-protein coupled receptor 1) (Neurepin) Length = 6298 Score = 28.9 bits (63), Expect = 6.9 Identities = 11/36 (30%), Positives = 19/36 (52%) Frame = +3 Query: 264 QTNLRLSSKPGNISHDTKYIITTQCCSGSEDRCTIH 371 QT L K N++ + +++ C+G + RC IH Sbjct: 5407 QTVTILQEKGANLTDELRFVAGVTTCTGGQTRCFIH 5442
>TIM22_ASHGO (Q75E80) Mitochondrial import inner membrane translocase subunit| TIM22 Length = 201 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = +1 Query: 106 PGMNLKEAPECHGFADLPLRFKLMIQYFERKASTDRSTTNYSII 237 PG + AP ADLPL+ ++ IQ+ + S N+ I Sbjct: 83 PGAGIPGAPTLQQMADLPLKQQIKIQFADMGRRAYSSAKNFGYI 126 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,655,115 Number of Sequences: 219361 Number of extensions: 1289236 Number of successful extensions: 2929 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2853 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2929 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
