ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MUTS_BURS3 (Q39EX8) DNA mismatch repair protein mutS 30 1.3

>MUTS_BURS3 (Q39EX8) DNA mismatch repair protein mutS|
          Length = 885

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 66  FVA*NVLTRKINMILAISDESTAVDTALFPIKSCLN*FLTVEPPNP 203
           F A   L  +I+ I+A +D  T VD AL P   CL+   +   P P
Sbjct: 383 FAALPALRERISAIVANADSLTRVDAALAPPAECLDLLTSAIAPEP 428


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,653,417
Number of Sequences: 219361
Number of extensions: 440213
Number of successful extensions: 852
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 80,573,946
effective HSP length: 44
effective length of database: 70,922,062
effective search space used: 1702129488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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