ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart55f12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrinsic protein 1 (PIP1) mRNA, complete cds Length = 1283 Score = 438 bits (221), Expect = e-120 Identities = 360/400 (90%), Gaps = 16/400 (4%) Strand = Plus / Minus Query: 12 cttgcttggcggattgatgatttggatagaa-ggtggcgacgttgggtcgatcatacata 70 ||||||||| |||||||||| || ||||||| |||||||||||||| ||||||||||||| Sbjct: 1273 cttgcttggtggattgatgacttagatagaaaggtggcgacgttggatcgatcatacata 1214 Query: 71 tggtcgctaaattaaaaca------ggaaaaggaatgcgggctaattaagacaagcgatc 124 ||||||||||||| ||| | ||||||| ||||||||||||||||||||||||||| Sbjct: 1213 tggtcgctaaatttaaatacaagtaggaaaagcaatgcgggctaattaagacaagcgatc 1154 Query: 125 ccatggaccgaattacaacacacggcacgcatgactgggc-acatac---gcatatgcag 180 |||||||||||||||||| |||||||||||||||| || | || ||| |||||||||| Sbjct: 1153 ccatggaccgaattacaagacacggcacgcatgaccggaccacgtactacgcatatgcag 1094 Query: 181 ctgccgacacataaataacacgaccattgcagcggcc-aactgaactgtcgagaagttgc 239 |||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| Sbjct: 1093 ctgccgacacataa-taacacgaccattgcggcggccgaactgaactgtcgagaagttgc 1035 Query: 240 aaaagcggcttcctctttggatggatggacacagcacaggtcgccattgcttcaatcttg 299 ||||||| || |||| |||||||||||||||| ||| |||||||||||||||| ||||| Sbjct: 1034 aaaagcgcatttctctctggatggatggacacaacacgggtcgccattgcttcagtcttg 975 Query: 300 catgcacatcacatggat---aactcgttacgcgttgctcctgaaggagccgagggcctt 356 ||| || || |||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct: 974 catacagatgacatggatgataacttgttacgcgttgctcctgaaggagccgagggcctt 915 Query: 357 gatggcgccggccctgagtatgtactggtggtagaaggcc 396 |||||||||||||||||| ||||||||||||||||||||| Sbjct: 914 gatggcgccggccctgaggatgtactggtggtagaaggcc 875
>gb|BT016583.1| Zea mays clone Contig416 mRNA sequence Length = 1348 Score = 117 bits (59), Expect = 3e-23 Identities = 68/71 (95%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385 |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| Sbjct: 924 acgcgttgctcctgaaggagccgagggccttgatggcgccagcccggaggatgtactggt 865 Query: 386 ggtagaaggcc 396 ||||||||||| Sbjct: 864 ggtagaaggcc 854
>gb|AY243801.1| Zea mays aquaporin (PIP2-1) mRNA, complete cds Length = 1133 Score = 117 bits (59), Expect = 3e-23 Identities = 68/71 (95%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385 |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| Sbjct: 872 acgcgttgctcctgaaggagccgagggccttgatggcgccagcccggaggatgtactggt 813 Query: 386 ggtagaaggcc 396 ||||||||||| Sbjct: 812 ggtagaaggcc 802
>gb|AF062393.1|AF062393 Oryza sativa aquaporin (PIP2a) mRNA, complete cds Length = 1328 Score = 117 bits (59), Expect = 3e-23 Identities = 65/67 (97%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct: 968 acgcgttgctcctgaaggagccgagggccttgatggcgccggcccggaggatgtactggt 909 Query: 386 ggtagaa 392 ||||||| Sbjct: 908 ggtagaa 902
>ref|NM_187092.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1242 Score = 109 bits (55), Expect = 7e-21 Identities = 64/67 (95%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 919 Query: 386 ggtagaa 392 ||||||| Sbjct: 918 ggtagaa 912
>ref|XM_507363.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117 mRNA Length = 1257 Score = 109 bits (55), Expect = 7e-21 Identities = 64/67 (95%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 980 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 921 Query: 386 ggtagaa 392 ||||||| Sbjct: 920 ggtagaa 914
>ref|XM_506304.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117 mRNA Length = 1298 Score = 109 bits (55), Expect = 7e-21 Identities = 64/67 (95%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 981 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 922 Query: 386 ggtagaa 392 ||||||| Sbjct: 921 ggtagaa 915
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 109 bits (55), Expect = 7e-21 Identities = 64/67 (95%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 15355852 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 15355793 Query: 386 ggtagaa 392 ||||||| Sbjct: 15355792 ggtagaa 15355786 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 tacgcgttgctcctgaaggagccg 348 ||||||||||||| |||||||||| Sbjct: 15306551 tacgcgttgctccggaaggagccg 15306528
>gb|AF326492.1|AF326492 Zea mays plasma membrane integral protein ZmPIP2-2 mRNA, complete cds Length = 1268 Score = 109 bits (55), Expect = 7e-21 Identities = 67/71 (94%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385 ||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||||| Sbjct: 996 acgcgttgctcctgaaggagccgagagccttgatggcgcccgcccggaggatgtactggt 937 Query: 386 ggtagaaggcc 396 ||||||||||| Sbjct: 936 ggtagaaggcc 926
>gb|AF326491.1|AF326491 Zea mays plasma membrane integral protein ZmPIP2-1 mRNA, complete cds Length = 1171 Score = 109 bits (55), Expect = 7e-21 Identities = 67/71 (94%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385 ||||||||||||||||||||||||||||||||||||| || |||| ||| |||||||||| Sbjct: 943 acgcgttgctcctgaaggagccgagggccttgatggccccagcccggaggatgtactggt 884 Query: 386 ggtagaaggcc 396 ||||||||||| Sbjct: 883 ggtagaaggcc 873
>dbj|AB029446.1| Oryza sativa (indica cultivar-group) rwc-2 mRNA for water channel protein, partial cds Length = 880 Score = 109 bits (55), Expect = 7e-21 Identities = 64/67 (95%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385 |||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| Sbjct: 544 acgcgttgctcctgaaggagccgagggccttgatggggccggcccggaggatgtactggt 485 Query: 386 ggtagaa 392 ||||||| Sbjct: 484 ggtagaa 478
>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1047_A06 Length = 111673 Score = 109 bits (55), Expect = 7e-21 Identities = 64/67 (95%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 62851 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 62792 Query: 386 ggtagaa 392 ||||||| Sbjct: 62791 ggtagaa 62785 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 tacgcgttgctcctgaaggagccg 348 ||||||||||||| |||||||||| Sbjct: 13550 tacgcgttgctccggaaggagccg 13527
>dbj|AK119656.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-H04, full insert sequence Length = 1216 Score = 109 bits (55), Expect = 7e-21 Identities = 64/67 (95%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 919 Query: 386 ggtagaa 392 ||||||| Sbjct: 918 ggtagaa 912
>dbj|AK105524.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G02, full insert sequence Length = 1451 Score = 109 bits (55), Expect = 7e-21 Identities = 64/67 (95%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 572 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 513 Query: 386 ggtagaa 392 ||||||| Sbjct: 512 ggtagaa 506
>dbj|AK103970.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B05, full insert sequence Length = 1242 Score = 109 bits (55), Expect = 7e-21 Identities = 64/67 (95%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 919 Query: 386 ggtagaa 392 ||||||| Sbjct: 918 ggtagaa 912
>dbj|AK072519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128K12, full insert sequence Length = 1298 Score = 109 bits (55), Expect = 7e-21 Identities = 64/67 (95%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385 |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 981 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 922 Query: 386 ggtagaa 392 ||||||| Sbjct: 921 ggtagaa 915
>gb|AY109332.1| Zea mays CL502_5 mRNA sequence Length = 1969 Score = 109 bits (55), Expect = 7e-21 Identities = 67/71 (94%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385 ||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||||| Sbjct: 1646 acgcgttgctcctgaaggagccgagagccttgatggcgcccgcccggaggatgtactggt 1587 Query: 386 ggtagaaggcc 396 ||||||||||| Sbjct: 1586 ggtagaaggcc 1576
>dbj|AK103938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G03, full insert sequence Length = 1257 Score = 101 bits (51), Expect = 2e-18 Identities = 63/67 (94%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggt 385 ||||||||||||||| |||||||||||| |||||||||||||||| ||| |||||||||| Sbjct: 980 acgcgttgctcctgagggagccgagggctttgatggcgccggcccggaggatgtactggt 921 Query: 386 ggtagaa 392 ||||||| Sbjct: 920 ggtagaa 914
>ref|XM_475029.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 849 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Minus Query: 330 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 386 |||||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 837 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 781
>emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0093G06, complete sequence Length = 127420 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Plus Query: 330 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 386 |||||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 91012 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 91068
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Plus Query: 330 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 386 |||||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 8906703 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 8906759
>dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086E18, full insert sequence Length = 1308 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Minus Query: 330 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 386 |||||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 936 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 880
>dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B05, full insert sequence Length = 1309 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Minus Query: 330 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 386 |||||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 930 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 874
>dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B10, full insert sequence Length = 1296 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Minus Query: 330 gttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 386 |||||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 924 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 868
>gb|AY903443.1| Astragalus membranaceus clone AM79 putative plasma membrane intrinsic protein mRNA, complete cds Length = 1120 Score = 48.1 bits (24), Expect = 0.022 Identities = 30/32 (93%) Strand = Plus / Minus Query: 331 ttgctcctgaaggagccgagggccttgatggc 362 |||||||||||||| ||||| ||||||||||| Sbjct: 839 ttgctcctgaaggatccgagagccttgatggc 808
>dbj|AK119661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B01, full insert sequence Length = 1067 Score = 46.1 bits (23), Expect = 0.086 Identities = 47/55 (85%) Strand = Plus / Minus Query: 332 tgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtg 386 |||||| ||||||||| || ||||||||||| | |||| ||| ||||||||||| Sbjct: 821 tgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 767
>gb|AF154641.1| Nicotiana tabacum clone PR16 mRNA sequence Length = 1100 Score = 42.1 bits (21), Expect = 1.3 Identities = 51/61 (83%) Strand = Plus / Minus Query: 331 ttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtggtag 390 |||||||||||||| || || || |||||||| || || | ||| ||| ||||||||||| Sbjct: 900 ttgctcctgaaggaaccaagagctttgatggcaccagcacggaggatgaactggtggtag 841 Query: 391 a 391 | Sbjct: 840 a 840
>gb|AE000657.1| Aquifex aeolicus VF5, complete genome Length = 1551335 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 aaattaaaacaggaaaaggaa 99 ||||||||||||||||||||| Sbjct: 624952 aaattaaaacaggaaaaggaa 624932
>dbj|AB058678.1| Pyrus communis Py-PIP2-1 mRNA for plasma membrane intrinsic protein 2-1, complete cds Length = 1311 Score = 42.1 bits (21), Expect = 1.3 Identities = 54/65 (83%) Strand = Plus / Minus Query: 331 ttgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtggtag 390 ||||| ||||| || || || ||||||||||| || || || || ||||| ||||||||| Sbjct: 907 ttgcttctgaaagatcccagagccttgatggctcctgctctcagaatgtattggtggtag 848 Query: 391 aaggc 395 ||||| Sbjct: 847 aaggc 843
>gb|DQ202709.1| Olea europaea plasma membrane intrinsic protein (pip2) mRNA, complete cds Length = 1260 Score = 40.1 bits (20), Expect = 5.3 Identities = 35/40 (87%) Strand = Plus / Minus Query: 352 gccttgatggcgccggccctgagtatgtactggtggtaga 391 ||||||||||| || ||||| || ||||| |||||||||| Sbjct: 915 gccttgatggctcctgcccttaggatgtattggtggtaga 876
>ref|NM_187081.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1215 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 tacgcgttgctcctgaaggagccg 348 ||||||||||||| |||||||||| Sbjct: 954 tacgcgttgctccggaaggagccg 931
>ref|XM_605968.2| PREDICTED: Bos taurus similar to olfactory receptor Olr1413 (LOC527575), mRNA Length = 1797 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 ggcttcctctttggatggat 265 |||||||||||||||||||| Sbjct: 385 ggcttcctctttggatggat 404
>gb|AC016250.5| Homo sapiens chromosome 8 clone RP11-516P9, complete sequence Length = 199569 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 ttaaaacaggaaaaggaatg 101 |||||||||||||||||||| Sbjct: 92945 ttaaaacaggaaaaggaatg 92926
>emb|BX545848.23| Zebrafish DNA sequence from clone DKEY-8O19 in linkage group 20 Contains the gene for a novel protein (zgc:63746), the gene for a novel protein (zgc:55614), the gene for the 5' end of a novel protein similar to mouse and human cyclin-dependent kinase (CDC2-like) 11 (CDK11), the gene for a novel protein similar to vertebrate mitogen-activated protein kinase kinase kinase 5 (MAP3K5), a novel gene and eleven CpG islands, complete sequence Length = 199986 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 gctaaattaaaacaggaaaa 95 |||||||||||||||||||| Sbjct: 129625 gctaaattaaaacaggaaaa 129606
>gb|AC025207.5| Homo sapiens chromosome 8, clone RP11-193J8, complete sequence Length = 157375 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ttaaaacaggaaaaggaatg 101 |||||||||||||||||||| Sbjct: 143776 ttaaaacaggaaaaggaatg 143795
>gb|AF141642.1|AF141642 Vitis berlandieri x Vitis rupestris putative aquaporin PIP2-1 (PIP2-1) mRNA, complete cds Length = 1300 Score = 40.1 bits (20), Expect = 5.3 Identities = 53/64 (82%) Strand = Plus / Minus Query: 332 tgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtggtaga 391 |||||||||| || || || |||||||| || || || || | |||| |||||||||||| Sbjct: 912 tgctcctgaatgacccaagagccttgatagctccagctctcaatatgaactggtggtaga 853 Query: 392 aggc 395 |||| Sbjct: 852 aggc 849
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 aaattaaaacaggaaaagga 98 |||||||||||||||||||| Sbjct: 751943 aaattaaaacaggaaaagga 751962
>gb|DQ339464.1| Vitis pseudoreticulata aquaporin protein (PIP2-1) mRNA, complete cds Length = 480 Score = 40.1 bits (20), Expect = 5.3 Identities = 53/64 (82%) Strand = Plus / Minus Query: 332 tgctcctgaaggagccgagggccttgatggcgccggccctgagtatgtactggtggtaga 391 |||||||||| || || || |||||||| || || || || | |||| |||||||||||| Sbjct: 466 tgctcctgaatgacccaagagccttgatagctccagctctcaatatgaactggtggtaga 407 Query: 392 aggc 395 |||| Sbjct: 406 aggc 403
>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036E06 Length = 137926 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 aaattaaaacaggaaaagga 98 |||||||||||||||||||| Sbjct: 30074 aaattaaaacaggaaaagga 30093
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 cttcctctttggatggatgg 267 |||||||||||||||||||| Sbjct: 5355169 cttcctctttggatggatgg 5355188
>dbj|AP004668.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0475E07 Length = 139961 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 tacgcgttgctcctgaaggagccg 348 ||||||||||||| |||||||||| Sbjct: 92564 tacgcgttgctccggaaggagccg 92541
>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1399_H05 Length = 147670 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 aaattaaaacaggaaaagga 98 |||||||||||||||||||| Sbjct: 108838 aaattaaaacaggaaaagga 108857
>dbj|AK072632.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132K03, full insert sequence Length = 1215 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 tacgcgttgctcctgaaggagccg 348 ||||||||||||| |||||||||| Sbjct: 954 tacgcgttgctccggaaggagccg 931
>emb|BX248523.8| Zebrafish DNA sequence from clone CH211-257G8 in linkage group 20, complete sequence Length = 169849 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gctaaattaaaacaggaaaa 95 |||||||||||||||||||| Sbjct: 35269 gctaaattaaaacaggaaaa 35288
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 tatggtcgctaaattaaaac 88 |||||||||||||||||||| Sbjct: 4757676 tatggtcgctaaattaaaac 4757657
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 tatggtcgctaaattaaaac 88 |||||||||||||||||||| Sbjct: 4688695 tatggtcgctaaattaaaac 4688676
>dbj|AP003548.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1448A5 Length = 178420 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ttaaaacaggaaaaggaatg 101 |||||||||||||||||||| Sbjct: 145388 ttaaaacaggaaaaggaatg 145407 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,289,528 Number of Sequences: 3902068 Number of extensions: 3289528 Number of successful extensions: 54892 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54708 Number of HSP's gapped (non-prelim): 181 length of query: 396 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 374 effective length of database: 17,147,199,772 effective search space: 6413052714728 effective search space used: 6413052714728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
