ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart55f11 |
|---|---|
| Clone Library Name | barley_pub |
>XIP1_WHEAT (Q8L5C6) Xylanase inhibitor protein 1 precursor (Class III| chitinase homolog) (XIP-I protein) Length = 304 Score = 120 bits (300), Expect = 2e-27 Identities = 56/98 (57%), Positives = 71/98 (72%), Gaps = 3/98 (3%) Frame = -2 Query: 473 HVERALATGLVGRIFVRFYD-DADCAAN--WQRQWDKWTAAYPSAQIYLGLPASEQKVGY 303 HV RALATG+ R+ VR Y+ D C N W+ WDKWTAAYP+ + Y+GL A ++ + Sbjct: 201 HVGRALATGIFERVHVRTYESDKWCNQNLGWEGSWDKWTAAYPATRFYVGLTADDKSHQW 260 Query: 302 VHPKNLYYGVIQVVQKAANYGGVMVWERYEDKRTNYSS 189 VHPKN+YYGV V QK NYGG+M+W+RY DK+TNYSS Sbjct: 261 VHPKNVYYGVAPVAQKKDNYGGIMLWDRYFDKQTNYSS 298
>XIP1_ORYSA (Q7GCM7) Xylanase inhibitor protein 1 precursor (Class III| chitinase homolog a) (RIXI protein) Length = 304 Score = 99.0 bits (245), Expect = 6e-21 Identities = 51/108 (47%), Positives = 66/108 (61%), Gaps = 8/108 (7%) Frame = -2 Query: 470 VERALATGLVGRIFVRFYDDADCAANW------QRQWDKWTAAYPSAQIYLGLPASEQ-- 315 +++AL T L RI VRFYDDA C+ N QW+KWTA YP + +YLGL A+ Sbjct: 197 MKKALDTKLFERIHVRFYDDATCSYNHAGLAGVMAQWNKWTARYPGSHVYLGLAAANVPG 256 Query: 314 KVGYVHPKNLYYGVIQVVQKAANYGGVMVWERYEDKRTNYSSYAIQWA 171 K V K LYY ++ VQKA NYGG+M+W+R+ DK+T Y WA Sbjct: 257 KNDNVFIKQLYYDLLPNVQKAKNYGGIMLWDRFYDKQTGYGKTVKYWA 304
>XIP2_ORYSA (Q53NL5) Xylanase inhibitor protein 2 precursor (Class III| chitinase homolog h) Length = 290 Score = 94.0 bits (232), Expect = 2e-19 Identities = 41/94 (43%), Positives = 65/94 (69%), Gaps = 1/94 (1%) Frame = -2 Query: 470 VERALATGLVGRIFVRFYDDADCAANWQRQWDKWTAAYPSAQIYLGLPAS-EQKVGYVHP 294 +E+ALATG+ RI VR + D C + + W+KW AA+P +++Y+GL AS EQ ++ Sbjct: 194 LEKALATGVFARIHVRMFGDEQCTMSPRYSWEKWAAAFPGSKVYIGLVASPEQDSAWMFQ 253 Query: 293 KNLYYGVIQVVQKAANYGGVMVWERYEDKRTNYS 192 K+LYY ++Q V+ NYGG+ +++RY DK+ NY+ Sbjct: 254 KDLYYEMLQFVRSLPNYGGLAIYDRYFDKKANYT 287
>CHLY_HEVBR (P23472) Hevamine-A precursor [Includes: Chitinase (EC 3.2.1.14);| Lysozyme (EC 3.2.1.17)] Length = 311 Score = 72.4 bits (176), Expect = 6e-13 Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 8/104 (7%) Frame = -2 Query: 476 RHVERALATGLVGRIFVRFYDDADCAA------NWQRQWDKWTAAYPSAQIYLGLPASEQ 315 R++ AL TGL ++V+FY++ C N W++WT + + +I+LGLPA+ + Sbjct: 190 RYLGTALNTGLFDYVWVQFYNNPPCQYSSGNINNIINSWNRWTTSINAGKIFLGLPAAPE 249 Query: 314 KVG--YVHPKNLYYGVIQVVQKAANYGGVMVWERYEDKRTNYSS 189 G YV P L ++ ++K+ YGGVM+W ++ D + YSS Sbjct: 250 AAGSGYVPPDVLISRILPEIKKSPKYGGVMLWSKFYDDKNGYSS 293
>CHIB_TOBAC (P29061) Basic endochitinase precursor (EC 3.2.1.14)| Length = 294 Score = 69.7 bits (169), Expect = 4e-12 Identities = 35/98 (35%), Positives = 63/98 (64%), Gaps = 7/98 (7%) Frame = -2 Query: 461 ALATGLVGRIFVRFYDDADC-----AANWQRQWDKWTAAYPSAQIYLGLPASEQKVG--Y 303 AL TGL ++V+FY++ +C + N++R+W++WT+ P+ ++Y+GLPA++ G Y Sbjct: 192 ALQTGLFDYVWVQFYNNPECEFMSNSENFKRRWNQWTSI-PAKKLYIGLPAAKTAAGNGY 250 Query: 302 VHPKNLYYGVIQVVQKAANYGGVMVWERYEDKRTNYSS 189 + + L V+ ++ ++ YGGVM+W R D + YSS Sbjct: 251 IPKQVLMSQVLPFLKGSSKYGGVMLWNRKFDVQCGYSS 288
>CHIA_CUCSA (P17541) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 292 Score = 67.0 bits (162), Expect = 2e-11 Identities = 32/96 (33%), Positives = 59/96 (61%), Gaps = 8/96 (8%) Frame = -2 Query: 473 HVERALATGLVGRIFVRFYDDADC-----AANWQRQWDKWTAAYPSAQIYLGLPASEQKV 309 H++ A+ TGL ++V+FY++ C A N W++WTA +P++++Y+GLPA+ + Sbjct: 186 HLDAAIKTGLFDSVWVQFYNNPPCMFADNADNLLSSWNQWTA-FPTSKLYMGLPAAREAA 244 Query: 308 ---GYVHPKNLYYGVIQVVQKAANYGGVMVWERYED 210 G++ L V+ ++ ++NYGGVM+W + D Sbjct: 245 PSGGFIPADVLISQVLPTIKASSNYGGVMLWSKAFD 280
>CHIT3_VITVI (P51614) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 301 Score = 67.0 bits (162), Expect = 2e-11 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 8/99 (8%) Frame = -2 Query: 461 ALATGLVGRIFVRFYDDADC------AANWQRQWDKWTAAYPSAQIYLGLPASEQKVG-- 306 AL TGL ++V+FY++ C N W++WT++ S ++GLPAS G Sbjct: 197 ALNTGLFDYVWVQFYNNPPCQYSSGNTNNLLNSWNRWTSSINSTGSFMGLPASSAAAGRG 256 Query: 305 YVHPKNLYYGVIQVVQKAANYGGVMVWERYEDKRTNYSS 189 ++ L ++ V++++ YGGVM+W +Y D ++ YSS Sbjct: 257 FIPANVLTSQILPVIKRSPKYGGVMLWSKYYDDQSGYSS 295
>CHIA_CICAR (P36908) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 293 Score = 65.5 bits (158), Expect = 7e-11 Identities = 32/104 (30%), Positives = 60/104 (57%), Gaps = 9/104 (8%) Frame = -2 Query: 473 HVERALATGLVGRIFVRFYDDADCAA------NWQRQWDKWTAAYPSAQIYLGLPASEQK 312 H++ A+ TGL ++V+FY++ C N W++WT++ + Q++LG+PAS+ Sbjct: 185 HLDSAIQTGLFDYVWVQFYNNPQCQYSNGNINNLVNAWNQWTSSQ-AKQVFLGVPASDAA 243 Query: 311 V---GYVHPKNLYYGVIQVVQKAANYGGVMVWERYEDKRTNYSS 189 G + L V+ ++ + YGGVM+W+R+ D ++ YS+ Sbjct: 244 APSGGLIPADVLTSQVLPAIKTSPKYGGVMIWDRFNDAQSGYSN 287
>CHIA_ARATH (P19172) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 302 Score = 63.9 bits (154), Expect = 2e-10 Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 8/99 (8%) Frame = -2 Query: 461 ALATGLVGRIFVRFYDDADCA------ANWQRQWDKWTAAYPSAQIYLGLPASEQKVG-- 306 AL T ++++FY++ C+ N W+KWT + + + +LGLPA+ + G Sbjct: 198 ALNTKRFDYVWIQFYNNPPCSYSSGNTQNLFDSWNKWTTSIAAQKFFLGLPAAPEAAGSG 257 Query: 305 YVHPKNLYYGVIQVVQKAANYGGVMVWERYEDKRTNYSS 189 Y+ P L ++ ++K+ YGGVM+W ++ D + YSS Sbjct: 258 YIPPDVLTSQILPTLKKSRKYGGVMLWSKFWDDKNGYSS 296
>CHIA_PHAAN (P29024) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 298 Score = 62.4 bits (150), Expect = 6e-10 Identities = 32/106 (30%), Positives = 61/106 (57%), Gaps = 8/106 (7%) Frame = -2 Query: 473 HVERALATGLVGRIFVRFYDDADCAANWQR------QWDKWTAAYPSAQIYLGLPASEQK 312 H++ A+ TGL ++V+FY++ C + W++WT++ + Q++LG+PAS Sbjct: 191 HLDTAIKTGLFDIVWVQFYNNPPCQYSSGNTNDLISSWNQWTSSQ-AKQLFLGVPASTAA 249 Query: 311 VG--YVHPKNLYYGVIQVVQKAANYGGVMVWERYEDKRTNYSSYAI 180 G ++ L V+ ++ ++ YGGVM+W+R+ D ++ YS I Sbjct: 250 AGSGFIPADVLTSQVLPTIKGSSKYGGVMLWDRFNDGQSGYSGAII 295
>CHIE_BETVU (P36910) Acidic endochitinase SE2 precursor (EC 3.2.1.14)| Length = 293 Score = 60.1 bits (144), Expect = 3e-09 Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 7/98 (7%) Frame = -2 Query: 461 ALATGLVGRIFVRFYDDADC-----AANWQRQWDKWTAAYPSAQIYLGLPASEQKVG--Y 303 A+ATGL ++V+FY++ C A N W++WT + QI+LGLPAS G + Sbjct: 193 AIATGLFDYVWVQFYNNPPCQYDTSADNLLSSWNQWTTVQAN-QIFLGLPASTDAAGSGF 251 Query: 302 VHPKNLYYGVIQVVQKAANYGGVMVWERYEDKRTNYSS 189 + L V+ ++ +A YGGVM+W + D + YSS Sbjct: 252 IPADALTSQVLPTIKGSAKYGGVMLWSKAYD--SGYSS 287
>CHIA_TOBAC (P29060) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 291 Score = 57.4 bits (137), Expect = 2e-08 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 8/99 (8%) Frame = -2 Query: 461 ALATGLVGRIFVRFYDDADC------AANWQRQWDKWTAAYPSAQIYLGLPASEQKVG-- 306 AL+TGL ++V+FY++ C A N + W++W A + +I+LGLPA++ G Sbjct: 190 ALSTGLFDYVWVQFYNNPPCQYSGGSADNLKNYWNQWNAIQ-AGKIFLGLPAAQGAAGSG 248 Query: 305 YVHPKNLYYGVIQVVQKAANYGGVMVWERYEDKRTNYSS 189 ++ L V+ ++ + YGGVM+W ++ D YSS Sbjct: 249 FIPSDVLVSQVLPLINGSPKYGGVMLWSKFYD--NGYSS 285
>CONB_CANEN (P49347) Concanavalin B precursor (Con B)| Length = 324 Score = 55.1 bits (131), Expect = 9e-08 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 12/112 (10%) Frame = -2 Query: 473 HVERALATGLVGRIFVRFYDDADC---AANWQR---QWDKWT-AAYP-SAQIYLGLPASE 318 +++ A+ T IFVRFY+D C N QR W WT + YP ++L LPAS+ Sbjct: 196 YLDNAIQTRHFDYIFVRFYNDRSCQYSTGNIQRIRNAWLSWTKSVYPRDKNLFLELPASQ 255 Query: 317 QKV---GYVHPKNLYYGVIQVVQKA-ANYGGVMVWERYEDKRTNYSSYAIQW 174 GY+ P L V+ + Y G+ +W R DK T YS+ I++ Sbjct: 256 ATAPGGGYIPPSALIGQVLPYLPDLQTRYAGIALWNRQADKETGYSTNIIRY 307
>CHIT_YEAST (P29029) Endochitinase precursor (EC 3.2.1.14) (Soluble cell wall| protein 2) Length = 562 Score = 41.6 bits (96), Expect = 0.001 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = -2 Query: 431 FVRFYDDADCAANWQRQWDKW------TAAYPSAQIYLGLPASEQKVG--YVHPKNLYYG 276 F++FY++ C+ + Q WD W + + +++LGLP S G Y+ +L Sbjct: 210 FIQFYNNY-CSVSGQFNWDTWLTYAQTVSPNKNIKLFLGLPGSASAAGSGYISDTSLLES 268 Query: 275 VIQVVQKAANYGGVMVWE 222 I + ++++GG+ +W+ Sbjct: 269 TIADIASSSSFGGIALWD 286
>CHI1_CANAL (P46876) Chitinase 1 precursor (EC 3.2.1.14)| Length = 462 Score = 40.8 bits (94), Expect = 0.002 Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 4/74 (5%) Frame = -2 Query: 431 FVRFYDDADCAANWQRQWDKWT--AAYPSAQIYLGLPASEQKV--GYVHPKNLYYGVIQV 264 F++FY++ C+ N Q W+ W+ A S ++YLGLP S G+V + V+ Sbjct: 200 FIQFYNNY-CSLNQQFNWNSWSNYARGKSIKLYLGLPGSSSSAGSGFVGLSTV-QRVVAS 257 Query: 263 VQKAANYGGVMVWE 222 ++ +++GG+ +W+ Sbjct: 258 IKGDSSFGGISIWD 271
>CHI2_COCIM (P54197) Endochitinase 2 precursor (EC 3.2.1.14)| Length = 860 Score = 40.0 bits (92), Expect = 0.003 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 20/105 (19%) Frame = -2 Query: 476 RHVERALATGLVGRIFVRFYDDADCAANWQRQW-----------DKWT-----AAYPSAQ 345 +++ A++ IF++FY++ C+A ++W D W + P A+ Sbjct: 214 KYLSHAISNSAFDFIFIQFYNNPSCSA---KRWVTNPKSVTYTVDDWVKYIRKSGNPLAK 270 Query: 344 IYLGLPASEQ---KVGYVHPKNLYYGVIQVVQK-AANYGGVMVWE 222 +++GLPAS+ K Y+ P V + K + +GG+MVWE Sbjct: 271 LFIGLPASKSAAAKEDYLTPGEATKIVSTYMAKYPSTFGGMMVWE 315
>CHI2_CANAL (P40953) Chitinase 2 precursor (EC 3.2.1.14)| Length = 583 Score = 39.3 bits (90), Expect = 0.005 Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 5/75 (6%) Frame = -2 Query: 431 FVRFYDDADCAANWQRQWDKWTAAYPSA-----QIYLGLPASEQKVGYVHPKNLYYGVIQ 267 F++FY++ C+ N Q +D W+ SA ++++G+PA+ GYV L I+ Sbjct: 207 FIQFYNNY-CSINGQFNYDTWSKFADSAPNKNIKLFVGVPATSNIAGYVDTSKL-SSAIE 264 Query: 266 VVQKAANYGGVMVWE 222 ++ +++ GV +W+ Sbjct: 265 EIKCDSHFAGVSLWD 279
>CHI2_RHIOL (P29027) Chitinase 2 precursor (EC 3.2.1.14)| Length = 542 Score = 32.7 bits (73), Expect = 0.50 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 9/78 (11%) Frame = -2 Query: 428 VRFYDDADCAANWQR----QWDKW---TAAYPSAQIYLGLPASEQKVG--YVHPKNLYYG 276 V+FY++ C+A WD W T+ + +I +P S G YV L Sbjct: 217 VQFYNNY-CSATGSSFNFDTWDNWAKTTSPNKNVKIMFTVPGSSTAAGSGYVPMSTLQTI 275 Query: 275 VIQVVQKAANYGGVMVWE 222 V + K ++YGGV VW+ Sbjct: 276 VPSLASKYSSYGGVSVWD 293
>CHI3_CANAL (P40954) Chitinase 3 precursor (EC 3.2.1.14)| Length = 567 Score = 32.3 bits (72), Expect = 0.65 Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Frame = -2 Query: 434 IFVRFYDDADCAANWQRQWDKW------TAAYPSAQIYLGLPASEQKV--GYVHPKNLYY 279 +F++FY++ + WD W + + ++++G+PAS + GY P + Sbjct: 210 VFIQFYNNYCNLGSSSFNWDTWLNYAETDSPNKNIKLFVGVPASSRAAGSGYNDPSAVSQ 269 Query: 278 GVIQVVQKAANYGGVMVWE 222 + + + +GG+ +W+ Sbjct: 270 YLTSDILNSKYFGGISMWD 288
>CHI1_RHIOL (P29026) Chitinase 1 precursor (EC 3.2.1.14)| Length = 540 Score = 31.2 bits (69), Expect = 1.4 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 9/78 (11%) Frame = -2 Query: 428 VRFYDDADCAANWQR----QWDKW---TAAYPSAQIYLGLPASEQKVG--YVHPKNLYYG 276 V+FY++ C+A WD W T+ + +I +P S G YV L Sbjct: 217 VQFYNNY-CSATGSSFNFDTWDNWAKTTSPNKNVKIMFTIPGSPTAAGSGYVPMSTLQTI 275 Query: 275 VIQVVQKAANYGGVMVWE 222 V + + ++YGGV VW+ Sbjct: 276 VPSLASEYSSYGGVSVWD 293
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 30.4 bits (67), Expect = 2.5 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Frame = -1 Query: 432 LCQVXXXXXXXRQLAEAVGQVDGGVSVGADLPRAAGVRAEGRL---RSSKEPLLRRHTGG 262 LC L +A + GG + G + R A R+ RSS P RR GG Sbjct: 984 LCTDSLPETDDSLLCDAGTAISGGKAEG-EKGRRRSSPARSRIKQGRSSSFPGRRRPRGG 1042 Query: 261 AEGGQLWRGHGLGTLRGQADKLQQL 187 A GG RG G L+ A ++ L Sbjct: 1043 AHGG---RGRGRARLKSTASSIETL 1064
>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)| Length = 275 Score = 30.4 bits (67), Expect = 2.5 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 30/121 (24%) Frame = -2 Query: 470 VERALATGLVGRIFVRFYDDADCAANWQRQWDKW-------------------------- 369 V R G+V + + +DDA +++Q W+K+ Sbjct: 142 VTRLKKNGVVSFVSIAPFDDAQVQSHYQALWEKYGHQIDYVNFQFYVYSSRMSVEQFLKY 201 Query: 368 ----TAAYPSAQIYLGLPASEQKVGYVHPKNLYYGVIQVVQKAANYGGVMVWERYEDKRT 201 + YP ++ + S G + P+N ++ +++K G+ VW + + Sbjct: 202 FEMQRSNYPGGKVLVSF--STDNSGGLKPRNGFFDACSILKKQGKLHGIFVWSADDSLMS 259 Query: 200 N 198 N Sbjct: 260 N 260
>HIS8_GEOMG (Q39YP6) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 350 Score = 30.0 bits (66), Expect = 3.2 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = -2 Query: 326 ASEQKVGYVHPKNLYYGVIQVVQKA 252 A +++GYVHP YYG + VQ A Sbjct: 102 AEGEEIGYVHPSYSYYGTLAEVQGA 126
>Y590_METJA (Q58010) Hypothetical protein MJ0590| Length = 704 Score = 28.9 bits (63), Expect = 7.2 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -2 Query: 392 WQRQWDKWTAAYPSAQIYLGLPASEQKVGYVHPKNL 285 W R ++ +YP + +G +E KVGY KNL Sbjct: 2 WGRDYELKYISYPKSVAIIGASKTEGKVGYAIMKNL 37
>VGLE_VZVD (P09259) Glycoprotein E precursor (Glycoprotein GI)| Length = 623 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -2 Query: 296 PKNLYYGVIQVVQKAANYGGVMVWE-RYEDKRTNYSSYAIQW 174 P + GV++V++ Y GV +W R D + Y+++ + W Sbjct: 278 PPEIEPGVLKVLRTEKQYLGVYIWNMRGSDGTSTYATFLVTW 319
>FLGE_CAUCR (P35806) Flagellar hook protein flgE| Length = 591 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 311 PSALTPAARGRSAPTDTPPSTCPTASASW 397 P+A+T + G APT TPP+ P +W Sbjct: 404 PTAITIKSSGYIAPTVTPPAVQPPTPPTW 432
>WDR50_DROME (Q9V7P1) Hypothetical WD-repeat protein l(2)k07824| Length = 506 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 365 AAYPSAQIYLGLPASEQKVGYV 300 A +PSA +Y PA +KVG+V Sbjct: 453 AHFPSATVYSNFPAQNEKVGFV 474
>SYA_STAES (Q8CSA7) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 876 Score = 28.5 bits (62), Expect = 9.4 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = -1 Query: 381 VGQVDGGVSVGADLPRAAGVRAE-GRLRSSKEPLLRRHTGGAEGGQLWRGHGLGT 220 VGQVDG VSV A +P++ + + G L + P++ GG GG+ G GT Sbjct: 807 VGQVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII----GGKGGGRPDMAQGGGT 857
>SYA_STAEQ (Q5HNT2) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 876 Score = 28.5 bits (62), Expect = 9.4 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = -1 Query: 381 VGQVDGGVSVGADLPRAAGVRAE-GRLRSSKEPLLRRHTGGAEGGQLWRGHGLGT 220 VGQVDG VSV A +P++ + + G L + P++ GG GG+ G GT Sbjct: 807 VGQVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII----GGKGGGRPDMAQGGGT 857
>FIMC_BORPE (P33410) Outer membrane usher protein fimC precursor| Length = 873 Score = 28.5 bits (62), Expect = 9.4 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -3 Query: 298 IQRTSTTASYRWCRRRPTMAGSWSGNVTRTSGQIT 194 +QR T+A Y + GSWSG SGQ+T Sbjct: 620 VQRAGTSAQY-------ALNGSWSGTYGEVSGQLT 647 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,237,437 Number of Sequences: 219361 Number of extensions: 1118777 Number of successful extensions: 4306 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3999 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4279 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
