ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1V17K_BSMV (P04868) 17 kDa protein (Beta-D protein) 28 8.3
2LYAM1_BOVIN (P98131) L-selectin precursor (Lymph node homing rec... 28 8.3

>V17K_BSMV (P04868) 17 kDa protein (Beta-D protein)|
          Length = 155

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +2

Query: 2   AMLSSVLIFITWLVQYMNTTLPSCSTYYWYIYLSSMHIYDL 124
           A+L+S+ I   WL+    +++P+ +  Y+Y  L+S+ IY +
Sbjct: 60  AILASLFIIALWLLYIYLSSIPTETGPYFYQDLNSVKIYGI 100



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>LYAM1_BOVIN (P98131) L-selectin precursor (Lymph node homing receptor)|
           (Leukocyte adhesion molecule 1) (LAM-1)
           (Leukocyte-endothelial cell adhesion molecule 1)
           (LECAM1) (CD62L antigen)
          Length = 370

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 41  VQYMNTTLPSCSTYYW 88
           ++Y+N TLP   TYYW
Sbjct: 73  IEYLNKTLPFSRTYYW 88


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,591,134
Number of Sequences: 219361
Number of extensions: 969440
Number of successful extensions: 1917
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1917
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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