Clone Name | rbart55e11 |
---|---|
Clone Library Name | barley_pub |
>gb|AC069113.9| Homo sapiens chromosome 8, clone RP11-597M17, complete sequence Length = 197616 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 57 ccacactgccctcctgctccac 78 |||||||||||||||||||||| Sbjct: 132574 ccacactgccctcctgctccac 132553
>gb|AF276759.4| Homo sapiens chromosome 8 clone RP11-420F14 map p21-p11, complete sequence Length = 213611 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 57 ccacactgccctcctgctccac 78 |||||||||||||||||||||| Sbjct: 81891 ccacactgccctcctgctccac 81870
>gb|AF243074.1|AF243074 Stigmatella aurantiaca 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (aroAA2) gene, complete cds Length = 1515 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 319 tcgccgttcagggcgcgcagct 340 |||||||||||||||||||||| Sbjct: 605 tcgccgttcagggcgcgcagct 584
>ref|XM_595633.2| PREDICTED: Bos taurus similar to pepsinogen 5, group I (pepsinogen A) (LOC517463), mRNA Length = 1143 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgctc 75 ||||||||||||||||||||| Sbjct: 660 caccacactgccctcctgctc 640
>ref|XM_615231.2| PREDICTED: Bos taurus pregnancy-associated glycoprotein 3 (PAG3), mRNA Length = 1143 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgctc 75 ||||||||||||||||||||| Sbjct: 663 caccacactgccctcctgctc 643
>gb|AC114912.3| Homo sapiens BAC clone RP11-552M14 from 4, complete sequence Length = 95468 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 agtatactgtatattgcaaaa 186 ||||||||||||||||||||| Sbjct: 6382 agtatactgtatattgcaaaa 6362
>ref|NM_176624.1| Bos taurus pregnancy-associated glycoprotein 15 (PAG15), mRNA Length = 1143 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgctc 75 ||||||||||||||||||||| Sbjct: 660 caccacactgccctcctgctc 640
>ref|NM_176626.1| Bos taurus pregnancy-associated glycoprotein 18 (PAG18), mRNA Length = 1146 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgctc 75 ||||||||||||||||||||| Sbjct: 660 caccacactgccctcctgctc 640
>gb|AF191329.1|AF191329 Capra hircus pregnancy-associated glycoprotein-4 (PAG-4) mRNA, complete cds Length = 1143 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgctc 75 ||||||||||||||||||||| Sbjct: 660 caccacactgccctcctgctc 640
>gb|AF191328.1|AF191328 Capra hircus pregnancy-associated glycoprotein-3 (PAG-3) mRNA, complete cds Length = 1143 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgctc 75 ||||||||||||||||||||| Sbjct: 660 caccacactgccctcctgctc 640
>ref|NM_001009356.1| Ovis aries pregnancy-associated glycoprotein 9 (PAG9), mRNA Length = 1072 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgctc 75 ||||||||||||||||||||| Sbjct: 668 caccacactgccctcctgctc 648
>ref|NM_001009794.1| Ovis aries pregnancy-associated glycoprotein 7 (PAG7), mRNA Length = 1175 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgctc 75 ||||||||||||||||||||| Sbjct: 671 caccacactgccctcctgctc 651
>ref|NM_001009462.1| Ovis aries pregnancy-associated glycoprotein 4 (PAG4), mRNA Length = 1168 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgctc 75 ||||||||||||||||||||| Sbjct: 671 caccacactgccctcctgctc 651
>gb|AF192335.1|AF192335 Bos taurus pregnancy-associated glycoprotein-18 (PAG-18) mRNA, complete cds Length = 1146 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgctc 75 ||||||||||||||||||||| Sbjct: 660 caccacactgccctcctgctc 640
>gb|AF192332.1|AF192332 Bos taurus pregnancy-associated glycoprotein-15 (PAG-15) mRNA, complete cds Length = 1143 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgctc 75 ||||||||||||||||||||| Sbjct: 660 caccacactgccctcctgctc 640
>gb|U94795.1|OAU94795 Ovis aries pregnancy-associated glycoprotein 9 mRNA, complete cds Length = 1072 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgctc 75 ||||||||||||||||||||| Sbjct: 668 caccacactgccctcctgctc 648
>gb|U94793.1|OAU94793 Ovis aries pregnancy-associated glycoprotein 7 mRNA, complete cds Length = 1175 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgctc 75 ||||||||||||||||||||| Sbjct: 671 caccacactgccctcctgctc 651
>gb|U94790.1|OAU94790 Ovis aries pregnancy-associated glycoprotein 4 mRNA, complete cds Length = 1168 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgctc 75 ||||||||||||||||||||| Sbjct: 671 caccacactgccctcctgctc 651
>gb|L06153.1|BOVPASGLYP Bovine pregnancy-associated glycoprotein variant mRNA, complete cds Length = 1266 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgctc 75 ||||||||||||||||||||| Sbjct: 656 caccacactgccctcctgctc 636
>gb|AC153795.1| Mus musculus BAC RP23-276L17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 182285 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 atggagtacactacagtata 171 |||||||||||||||||||| Sbjct: 49656 atggagtacactacagtata 49675
>ref|XM_871323.1| PREDICTED: Bos taurus similar to Pepsin A precursor (LOC619012), partial mRNA Length = 310 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgct 74 |||||||||||||||||||| Sbjct: 219 caccacactgccctcctgct 200
>gb|AC122200.4| Mus musculus BAC clone RP23-64D23 from 6, complete sequence Length = 243483 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 atggagtacactacagtata 171 |||||||||||||||||||| Sbjct: 213535 atggagtacactacagtata 213554
>emb|AL645768.7| Human DNA sequence from clone RP13-129E14 on chromosome 9 Contains part of the COL5A1 gene for collagen (type V) alpha 1, complete sequence Length = 45640 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 cacactgccctcctgctcca 77 |||||||||||||||||||| Sbjct: 14928 cacactgccctcctgctcca 14947
>emb|AL139010.29| Human DNA sequence from clone RP11-444M10 on chromosome 1 Contains the 3' end of a novel gene, a novel gene and the KIRREL gene for kin of IRRE like (Drosophila), complete sequence Length = 189477 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 gtatactgtatattgcaaaa 186 |||||||||||||||||||| Sbjct: 153048 gtatactgtatattgcaaaa 153067
>gb|AC113336.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0011A24, from chromosome 10, complete sequence Length = 176832 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 ttattttcattacatggctc 40 |||||||||||||||||||| Sbjct: 109219 ttattttcattacatggctc 109238
>emb|CR627496.8| Zebrafish DNA sequence from clone DKEY-223G10 in linkage group 17, complete sequence Length = 154593 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 161 actacagtatactgtatattgcaa 184 ||||| |||||||||||||||||| Sbjct: 139804 actactgtatactgtatattgcaa 139827
>gb|AC074355.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071I20, complete sequence Length = 145510 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 ttattttcattacatggctc 40 |||||||||||||||||||| Sbjct: 91750 ttattttcattacatggctc 91769
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 ttattttcattacatggctc 40 |||||||||||||||||||| Sbjct: 4803939 ttattttcattacatggctc 4803958 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 ttattttcattacatggctc 40 |||||||||||||||||||| Sbjct: 4544387 ttattttcattacatggctc 4544406
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 tgcaaaacttggtcgtcgtc 199 |||||||||||||||||||| Sbjct: 34813675 tgcaaaacttggtcgtcgtc 34813694
>gb|AY911497.1| Capra hircus pregnancy-associated glycoprotein 12 mRNA, complete cds Length = 1143 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgct 74 |||||||||||||||||||| Sbjct: 660 caccacactgccctcctgct 641
>ref|NM_176628.1| Bos taurus pregnancy-associated glycoprotein 19 (PAG19), mRNA Length = 1143 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgct 74 |||||||||||||||||||| Sbjct: 660 caccacactgccctcctgct 641
>ref|NM_176620.2| Bos taurus pregnancy-associated glycoprotein 9 (PAG9), mRNA Length = 1311 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgct 74 |||||||||||||||||||| Sbjct: 697 caccacactgccctcctgct 678
>ref|NM_176617.2| Bos taurus pregnancy-associated glycoprotein 6 (PAG6), mRNA Length = 1322 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgct 74 |||||||||||||||||||| Sbjct: 673 caccacactgccctcctgct 654
>gb|AF191331.1|AF191331 Capra hircus pregnancy-associated glycoprotein-6 (PAG-6) mRNA, complete cds Length = 1143 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgct 74 |||||||||||||||||||| Sbjct: 660 caccacactgccctcctgct 641
>gb|AF191326.1|AF191326 Capra hircus pregnancy-associated glycoprotein-1 (PAG-1) mRNA, complete cds Length = 1143 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgct 74 |||||||||||||||||||| Sbjct: 660 caccacactgccctcctgct 641
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 atcgccgttcagggcgcgca 337 |||||||||||||||||||| Sbjct: 3106647 atcgccgttcagggcgcgca 3106628
>gb|AF192336.1|AF192336 Bos taurus pregnancy-associated glycoprotein-19 (PAG-19) mRNA, complete cds Length = 1143 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgct 74 |||||||||||||||||||| Sbjct: 660 caccacactgccctcctgct 641
>gb|AC027045.21| Homo sapiens chromosome 17, clone RP11-477N12, complete sequence Length = 188646 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tcttattttcattacatggc 38 |||||||||||||||||||| Sbjct: 75407 tcttattttcattacatggc 75388
>dbj|AP005303.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0016F11 Length = 134907 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 tgcaaaacttggtcgtcgtc 199 |||||||||||||||||||| Sbjct: 131523 tgcaaaacttggtcgtcgtc 131542
>gb|AF020511.1|AF020511 Bos taurus pregnancy-associated glycoprotein 9 (PAG9) mRNA, complete cds Length = 1311 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgct 74 |||||||||||||||||||| Sbjct: 697 caccacactgccctcctgct 678
>gb|AF020508.1|AF020508 Bos taurus pregnancy-associated glycoprotein 6 (PAG6) mRNA, complete cds Length = 1322 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgct 74 |||||||||||||||||||| Sbjct: 673 caccacactgccctcctgct 654
>dbj|BS000242.1| Pan troglodytes chromosome 22 clone:PTB-120M01, map 22, complete sequences Length = 224098 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tggagttgcaagttacttta 220 |||||||||||||||||||| Sbjct: 58388 tggagttgcaagttacttta 58369
>dbj|BS000241.1| Pan troglodytes chromosome 22 clone:PTB-110J21, map 22, complete sequences Length = 102671 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tggagttgcaagttacttta 220 |||||||||||||||||||| Sbjct: 95258 tggagttgcaagttacttta 95239
>dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0053L11 Length = 147123 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 tgcaaaacttggtcgtcgtc 199 |||||||||||||||||||| Sbjct: 35270 tgcaaaacttggtcgtcgtc 35289
>emb|BX537133.3| Zebrafish DNA sequence from clone DKEY-90M5 in linkage group 20, complete sequence Length = 249791 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 158 tacactacagtatactgtatattg 181 ||||||||||||||||||| |||| Sbjct: 118833 tacactacagtatactgtagattg 118810
>gb|AC116882.9| Mus musculus chromosome 8, clone RP24-435G18, complete sequence Length = 187290 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 tacatttatctgtcatctat 108 |||||||||||||||||||| Sbjct: 73105 tacatttatctgtcatctat 73124
>dbj|AP001759.1| Homo sapiens genomic DNA, chromosome 21q, section 103/105 Length = 340000 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tggagttgcaagttacttta 220 |||||||||||||||||||| Sbjct: 219491 tggagttgcaagttacttta 219472
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 ttattttcattacatggctc 40 |||||||||||||||||||| Sbjct: 4804760 ttattttcattacatggctc 4804779 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 ttattttcattacatggctc 40 |||||||||||||||||||| Sbjct: 4545208 ttattttcattacatggctc 4545227
>emb|CR536612.8| Zebrafish DNA sequence from clone DKEY-1O1 in linkage group 15, complete sequence Length = 224998 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 cactacagtatactgtatat 179 |||||||||||||||||||| Sbjct: 187040 cactacagtatactgtatat 187021
>gb|M73961.1|SHPOPAG Ovine pregnancy-associated glycoprotein 1 mRNA, complete cds Length = 1266 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 caccacactgccctcctgct 74 |||||||||||||||||||| Sbjct: 686 caccacactgccctcctgct 667
>emb|AL671916.5| Mouse DNA sequence from clone RP23-294O1 on chromosome X, complete sequence Length = 205436 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 accttcttggctatgtcacg 363 |||||||||||||||||||| Sbjct: 182806 accttcttggctatgtcacg 182825
>dbj|AP001468.1| Homo sapiens genomic DNA, chromosome 21q22.3, clone:21B35B20, telomere region, complete sequence Length = 67332 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tggagttgcaagttacttta 220 |||||||||||||||||||| Sbjct: 47294 tggagttgcaagttacttta 47275 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,974,877 Number of Sequences: 3902068 Number of extensions: 2974877 Number of successful extensions: 51983 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51848 Number of HSP's gapped (non-prelim): 135 length of query: 414 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 392 effective length of database: 17,147,199,772 effective search space: 6721702310624 effective search space used: 6721702310624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)