ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC069113.9| Homo sapiens chromosome 8, clone RP11-597M17, com... 44 0.36
2gb|AF276759.4| Homo sapiens chromosome 8 clone RP11-420F14 map p... 44 0.36
3gb|AF243074.1|AF243074 Stigmatella aurantiaca 3-deoxy-D-arabino-... 44 0.36
4ref|XM_595633.2| PREDICTED: Bos taurus similar to pepsinogen 5, ... 42 1.4
5ref|XM_615231.2| PREDICTED: Bos taurus pregnancy-associated glyc... 42 1.4
6gb|AC114912.3| Homo sapiens BAC clone RP11-552M14 from 4, comple... 42 1.4
7ref|NM_176624.1| Bos taurus pregnancy-associated glycoprotein 15... 42 1.4
8ref|NM_176626.1| Bos taurus pregnancy-associated glycoprotein 18... 42 1.4
9gb|AF191329.1|AF191329 Capra hircus pregnancy-associated glycopr... 42 1.4
10gb|AF191328.1|AF191328 Capra hircus pregnancy-associated glycopr... 42 1.4
11ref|NM_001009356.1| Ovis aries pregnancy-associated glycoprotein... 42 1.4
12ref|NM_001009794.1| Ovis aries pregnancy-associated glycoprotein... 42 1.4
13ref|NM_001009462.1| Ovis aries pregnancy-associated glycoprotein... 42 1.4
14gb|AF192335.1|AF192335 Bos taurus pregnancy-associated glycoprot... 42 1.4
15gb|AF192332.1|AF192332 Bos taurus pregnancy-associated glycoprot... 42 1.4
16gb|U94795.1|OAU94795 Ovis aries pregnancy-associated glycoprotei... 42 1.4
17gb|U94793.1|OAU94793 Ovis aries pregnancy-associated glycoprotei... 42 1.4
18gb|U94790.1|OAU94790 Ovis aries pregnancy-associated glycoprotei... 42 1.4
19gb|L06153.1|BOVPASGLYP Bovine pregnancy-associated glycoprotein ... 42 1.4
20gb|AC153795.1| Mus musculus BAC RP23-276L17 (Roswell Park Cance... 40 5.5
21ref|XM_871323.1| PREDICTED: Bos taurus similar to Pepsin A precu... 40 5.5
22gb|AC122200.4| Mus musculus BAC clone RP23-64D23 from 6, complet... 40 5.5
23emb|AL645768.7| Human DNA sequence from clone RP13-129E14 on chr... 40 5.5
24emb|AL139010.29| Human DNA sequence from clone RP11-444M10 on ch... 40 5.5
25gb|AC113336.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.5
26emb|CR627496.8| Zebrafish DNA sequence from clone DKEY-223G10 in... 40 5.5
27gb|AC074355.6| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
28dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
29dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
30gb|AY911497.1| Capra hircus pregnancy-associated glycoprotein 12... 40 5.5
31ref|NM_176628.1| Bos taurus pregnancy-associated glycoprotein 19... 40 5.5
32ref|NM_176620.2| Bos taurus pregnancy-associated glycoprotein 9 ... 40 5.5
33ref|NM_176617.2| Bos taurus pregnancy-associated glycoprotein 6 ... 40 5.5
34gb|AF191331.1|AF191331 Capra hircus pregnancy-associated glycopr... 40 5.5
35gb|AF191326.1|AF191326 Capra hircus pregnancy-associated glycopr... 40 5.5
36dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.5
37gb|AF192336.1|AF192336 Bos taurus pregnancy-associated glycoprot... 40 5.5
38gb|AC027045.21| Homo sapiens chromosome 17, clone RP11-477N12, c... 40 5.5
39dbj|AP005303.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
40gb|AF020511.1|AF020511 Bos taurus pregnancy-associated glycoprot... 40 5.5
41gb|AF020508.1|AF020508 Bos taurus pregnancy-associated glycoprot... 40 5.5
42dbj|BS000242.1| Pan troglodytes chromosome 22 clone:PTB-120M01, ... 40 5.5
43dbj|BS000241.1| Pan troglodytes chromosome 22 clone:PTB-110J21, ... 40 5.5
44dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
45emb|BX537133.3| Zebrafish DNA sequence from clone DKEY-90M5 in l... 40 5.5
46gb|AC116882.9| Mus musculus chromosome 8, clone RP24-435G18, com... 40 5.5
47dbj|AP001759.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.5
48gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
49emb|CR536612.8| Zebrafish DNA sequence from clone DKEY-1O1 in li... 40 5.5
50gb|M73961.1|SHPOPAG Ovine pregnancy-associated glycoprotein 1 mR... 40 5.5
51emb|AL671916.5| Mouse DNA sequence from clone RP23-294O1 on chro... 40 5.5
52dbj|AP001468.1| Homo sapiens genomic DNA, chromosome 21q22.3, cl... 40 5.5

>gb|AC069113.9| Homo sapiens chromosome 8, clone RP11-597M17, complete sequence
          Length = 197616

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 57     ccacactgccctcctgctccac 78
              ||||||||||||||||||||||
Sbjct: 132574 ccacactgccctcctgctccac 132553



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>gb|AF276759.4| Homo sapiens chromosome 8 clone RP11-420F14 map p21-p11, complete
             sequence
          Length = 213611

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 57    ccacactgccctcctgctccac 78
             ||||||||||||||||||||||
Sbjct: 81891 ccacactgccctcctgctccac 81870



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>gb|AF243074.1|AF243074 Stigmatella aurantiaca 3-deoxy-D-arabino-heptulosonate-7-phosphate
           synthase (aroAA2) gene, complete cds
          Length = 1515

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 319 tcgccgttcagggcgcgcagct 340
           ||||||||||||||||||||||
Sbjct: 605 tcgccgttcagggcgcgcagct 584



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>ref|XM_595633.2| PREDICTED: Bos taurus similar to pepsinogen 5, group I (pepsinogen
           A) (LOC517463), mRNA
          Length = 1143

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 55  caccacactgccctcctgctc 75
           |||||||||||||||||||||
Sbjct: 660 caccacactgccctcctgctc 640



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>ref|XM_615231.2| PREDICTED: Bos taurus pregnancy-associated glycoprotein 3 (PAG3),
           mRNA
          Length = 1143

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 55  caccacactgccctcctgctc 75
           |||||||||||||||||||||
Sbjct: 663 caccacactgccctcctgctc 643



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>gb|AC114912.3| Homo sapiens BAC clone RP11-552M14 from 4, complete sequence
          Length = 95468

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 166  agtatactgtatattgcaaaa 186
            |||||||||||||||||||||
Sbjct: 6382 agtatactgtatattgcaaaa 6362



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>ref|NM_176624.1| Bos taurus pregnancy-associated glycoprotein 15 (PAG15), mRNA
          Length = 1143

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 55  caccacactgccctcctgctc 75
           |||||||||||||||||||||
Sbjct: 660 caccacactgccctcctgctc 640



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>ref|NM_176626.1| Bos taurus pregnancy-associated glycoprotein 18 (PAG18), mRNA
          Length = 1146

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 55  caccacactgccctcctgctc 75
           |||||||||||||||||||||
Sbjct: 660 caccacactgccctcctgctc 640



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>gb|AF191329.1|AF191329 Capra hircus pregnancy-associated glycoprotein-4 (PAG-4) mRNA,
           complete cds
          Length = 1143

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 55  caccacactgccctcctgctc 75
           |||||||||||||||||||||
Sbjct: 660 caccacactgccctcctgctc 640



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>gb|AF191328.1|AF191328 Capra hircus pregnancy-associated glycoprotein-3 (PAG-3) mRNA,
           complete cds
          Length = 1143

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 55  caccacactgccctcctgctc 75
           |||||||||||||||||||||
Sbjct: 660 caccacactgccctcctgctc 640



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>ref|NM_001009356.1| Ovis aries pregnancy-associated glycoprotein 9 (PAG9), mRNA
          Length = 1072

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 55  caccacactgccctcctgctc 75
           |||||||||||||||||||||
Sbjct: 668 caccacactgccctcctgctc 648



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>ref|NM_001009794.1| Ovis aries pregnancy-associated glycoprotein 7 (PAG7), mRNA
          Length = 1175

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 55  caccacactgccctcctgctc 75
           |||||||||||||||||||||
Sbjct: 671 caccacactgccctcctgctc 651



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>ref|NM_001009462.1| Ovis aries pregnancy-associated glycoprotein 4 (PAG4), mRNA
          Length = 1168

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 55  caccacactgccctcctgctc 75
           |||||||||||||||||||||
Sbjct: 671 caccacactgccctcctgctc 651



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>gb|AF192335.1|AF192335 Bos taurus pregnancy-associated glycoprotein-18 (PAG-18) mRNA,
           complete cds
          Length = 1146

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 55  caccacactgccctcctgctc 75
           |||||||||||||||||||||
Sbjct: 660 caccacactgccctcctgctc 640



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>gb|AF192332.1|AF192332 Bos taurus pregnancy-associated glycoprotein-15 (PAG-15) mRNA,
           complete cds
          Length = 1143

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 55  caccacactgccctcctgctc 75
           |||||||||||||||||||||
Sbjct: 660 caccacactgccctcctgctc 640



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>gb|U94795.1|OAU94795 Ovis aries pregnancy-associated glycoprotein 9 mRNA, complete cds
          Length = 1072

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 55  caccacactgccctcctgctc 75
           |||||||||||||||||||||
Sbjct: 668 caccacactgccctcctgctc 648



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>gb|U94793.1|OAU94793 Ovis aries pregnancy-associated glycoprotein 7 mRNA, complete cds
          Length = 1175

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 55  caccacactgccctcctgctc 75
           |||||||||||||||||||||
Sbjct: 671 caccacactgccctcctgctc 651



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>gb|U94790.1|OAU94790 Ovis aries pregnancy-associated glycoprotein 4 mRNA, complete cds
          Length = 1168

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 55  caccacactgccctcctgctc 75
           |||||||||||||||||||||
Sbjct: 671 caccacactgccctcctgctc 651



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>gb|L06153.1|BOVPASGLYP Bovine pregnancy-associated glycoprotein variant mRNA, complete cds
          Length = 1266

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 55  caccacactgccctcctgctc 75
           |||||||||||||||||||||
Sbjct: 656 caccacactgccctcctgctc 636



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>gb|AC153795.1| Mus musculus  BAC RP23-276L17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 182285

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   atggagtacactacagtata 171
             ||||||||||||||||||||
Sbjct: 49656 atggagtacactacagtata 49675



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>ref|XM_871323.1| PREDICTED: Bos taurus similar to Pepsin A precursor (LOC619012),
           partial mRNA
          Length = 310

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  caccacactgccctcctgct 74
           ||||||||||||||||||||
Sbjct: 219 caccacactgccctcctgct 200



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>gb|AC122200.4| Mus musculus BAC clone RP23-64D23 from 6, complete sequence
          Length = 243483

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    atggagtacactacagtata 171
              ||||||||||||||||||||
Sbjct: 213535 atggagtacactacagtata 213554



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>emb|AL645768.7| Human DNA sequence from clone RP13-129E14 on chromosome 9 Contains part
             of the COL5A1 gene for collagen (type V) alpha 1, complete
             sequence
          Length = 45640

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    cacactgccctcctgctcca 77
             ||||||||||||||||||||
Sbjct: 14928 cacactgccctcctgctcca 14947



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>emb|AL139010.29| Human DNA sequence from clone RP11-444M10 on chromosome 1 Contains the 3'
              end of a novel gene, a novel gene and the KIRREL gene for
              kin of IRRE like (Drosophila), complete sequence
          Length = 189477

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 167    gtatactgtatattgcaaaa 186
              ||||||||||||||||||||
Sbjct: 153048 gtatactgtatattgcaaaa 153067



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>gb|AC113336.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0011A24, from chromosome 10, complete sequence
          Length = 176832

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     ttattttcattacatggctc 40
              ||||||||||||||||||||
Sbjct: 109219 ttattttcattacatggctc 109238



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>emb|CR627496.8| Zebrafish DNA sequence from clone DKEY-223G10 in linkage group 17,
              complete sequence
          Length = 154593

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 161    actacagtatactgtatattgcaa 184
              ||||| ||||||||||||||||||
Sbjct: 139804 actactgtatactgtatattgcaa 139827



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>gb|AC074355.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0071I20, complete sequence
          Length = 145510

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    ttattttcattacatggctc 40
             ||||||||||||||||||||
Sbjct: 91750 ttattttcattacatggctc 91769



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 21      ttattttcattacatggctc 40
               ||||||||||||||||||||
Sbjct: 4803939 ttattttcattacatggctc 4803958



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 21      ttattttcattacatggctc 40
               ||||||||||||||||||||
Sbjct: 4544387 ttattttcattacatggctc 4544406



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 180      tgcaaaacttggtcgtcgtc 199
                ||||||||||||||||||||
Sbjct: 34813675 tgcaaaacttggtcgtcgtc 34813694



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>gb|AY911497.1| Capra hircus pregnancy-associated glycoprotein 12 mRNA, complete
           cds
          Length = 1143

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  caccacactgccctcctgct 74
           ||||||||||||||||||||
Sbjct: 660 caccacactgccctcctgct 641



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>ref|NM_176628.1| Bos taurus pregnancy-associated glycoprotein 19 (PAG19), mRNA
          Length = 1143

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  caccacactgccctcctgct 74
           ||||||||||||||||||||
Sbjct: 660 caccacactgccctcctgct 641



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>ref|NM_176620.2| Bos taurus pregnancy-associated glycoprotein 9 (PAG9), mRNA
          Length = 1311

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  caccacactgccctcctgct 74
           ||||||||||||||||||||
Sbjct: 697 caccacactgccctcctgct 678



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>ref|NM_176617.2| Bos taurus pregnancy-associated glycoprotein 6 (PAG6), mRNA
          Length = 1322

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  caccacactgccctcctgct 74
           ||||||||||||||||||||
Sbjct: 673 caccacactgccctcctgct 654



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>gb|AF191331.1|AF191331 Capra hircus pregnancy-associated glycoprotein-6 (PAG-6) mRNA,
           complete cds
          Length = 1143

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  caccacactgccctcctgct 74
           ||||||||||||||||||||
Sbjct: 660 caccacactgccctcctgct 641



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>gb|AF191326.1|AF191326 Capra hircus pregnancy-associated glycoprotein-1 (PAG-1) mRNA,
           complete cds
          Length = 1143

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  caccacactgccctcctgct 74
           ||||||||||||||||||||
Sbjct: 660 caccacactgccctcctgct 641



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 318     atcgccgttcagggcgcgca 337
               ||||||||||||||||||||
Sbjct: 3106647 atcgccgttcagggcgcgca 3106628



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>gb|AF192336.1|AF192336 Bos taurus pregnancy-associated glycoprotein-19 (PAG-19) mRNA,
           complete cds
          Length = 1143

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  caccacactgccctcctgct 74
           ||||||||||||||||||||
Sbjct: 660 caccacactgccctcctgct 641



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>gb|AC027045.21| Homo sapiens chromosome 17, clone RP11-477N12, complete sequence
          Length = 188646

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    tcttattttcattacatggc 38
             ||||||||||||||||||||
Sbjct: 75407 tcttattttcattacatggc 75388



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>dbj|AP005303.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0016F11
          Length = 134907

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    tgcaaaacttggtcgtcgtc 199
              ||||||||||||||||||||
Sbjct: 131523 tgcaaaacttggtcgtcgtc 131542



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>gb|AF020511.1|AF020511 Bos taurus pregnancy-associated glycoprotein 9 (PAG9) mRNA,
           complete cds
          Length = 1311

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  caccacactgccctcctgct 74
           ||||||||||||||||||||
Sbjct: 697 caccacactgccctcctgct 678



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>gb|AF020508.1|AF020508 Bos taurus pregnancy-associated glycoprotein 6 (PAG6) mRNA,
           complete cds
          Length = 1322

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  caccacactgccctcctgct 74
           ||||||||||||||||||||
Sbjct: 673 caccacactgccctcctgct 654



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>dbj|BS000242.1| Pan troglodytes chromosome 22 clone:PTB-120M01, map 22, complete
             sequences
          Length = 224098

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   tggagttgcaagttacttta 220
             ||||||||||||||||||||
Sbjct: 58388 tggagttgcaagttacttta 58369



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>dbj|BS000241.1| Pan troglodytes chromosome 22 clone:PTB-110J21, map 22, complete
             sequences
          Length = 102671

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   tggagttgcaagttacttta 220
             ||||||||||||||||||||
Sbjct: 95258 tggagttgcaagttacttta 95239



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>dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0053L11
          Length = 147123

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   tgcaaaacttggtcgtcgtc 199
             ||||||||||||||||||||
Sbjct: 35270 tgcaaaacttggtcgtcgtc 35289



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>emb|BX537133.3| Zebrafish DNA sequence from clone DKEY-90M5 in linkage group 20, complete
              sequence
          Length = 249791

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 158    tacactacagtatactgtatattg 181
              ||||||||||||||||||| ||||
Sbjct: 118833 tacactacagtatactgtagattg 118810



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>gb|AC116882.9| Mus musculus chromosome 8, clone RP24-435G18, complete sequence
          Length = 187290

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    tacatttatctgtcatctat 108
             ||||||||||||||||||||
Sbjct: 73105 tacatttatctgtcatctat 73124



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>dbj|AP001759.1| Homo sapiens genomic DNA, chromosome 21q, section 103/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    tggagttgcaagttacttta 220
              ||||||||||||||||||||
Sbjct: 219491 tggagttgcaagttacttta 219472



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 21      ttattttcattacatggctc 40
               ||||||||||||||||||||
Sbjct: 4804760 ttattttcattacatggctc 4804779



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 21      ttattttcattacatggctc 40
               ||||||||||||||||||||
Sbjct: 4545208 ttattttcattacatggctc 4545227



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>emb|CR536612.8| Zebrafish DNA sequence from clone DKEY-1O1 in linkage group 15, complete
              sequence
          Length = 224998

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    cactacagtatactgtatat 179
              ||||||||||||||||||||
Sbjct: 187040 cactacagtatactgtatat 187021



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>gb|M73961.1|SHPOPAG Ovine pregnancy-associated glycoprotein 1 mRNA, complete cds
          Length = 1266

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  caccacactgccctcctgct 74
           ||||||||||||||||||||
Sbjct: 686 caccacactgccctcctgct 667



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>emb|AL671916.5| Mouse DNA sequence from clone RP23-294O1 on chromosome X, complete
              sequence
          Length = 205436

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 344    accttcttggctatgtcacg 363
              ||||||||||||||||||||
Sbjct: 182806 accttcttggctatgtcacg 182825



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>dbj|AP001468.1| Homo sapiens genomic DNA, chromosome 21q22.3, clone:21B35B20, telomere
             region, complete sequence
          Length = 67332

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   tggagttgcaagttacttta 220
             ||||||||||||||||||||
Sbjct: 47294 tggagttgcaagttacttta 47275


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,974,877
Number of Sequences: 3902068
Number of extensions: 2974877
Number of successful extensions: 51983
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51848
Number of HSP's gapped (non-prelim): 135
length of query: 414
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 392
effective length of database: 17,147,199,772
effective search space: 6721702310624
effective search space used: 6721702310624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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