ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart55e05 |
|---|---|
| Clone Library Name | barley_pub |
>NQR1_ORYSA (Q941Z0) Putative NADPH:quinone oxidoreductase 1 (EC 1.6.5.2)| Length = 197 Score = 112 bits (281), Expect = 3e-25 Identities = 49/71 (69%), Positives = 63/71 (88%) Frame = -2 Query: 409 FGGGRASLHLREIGIYLDLHFINKPELHIRAYEDPPKFDGEGNLVDAKARERLKKVLLSL 230 FGGGR+ HLR++G++LDLHFINKPEL ++A+E PPKFD +GNL+DA+ RER+K+VLLSL Sbjct: 127 FGGGRSQYHLRQVGVFLDLHFINKPELAVKAFEQPPKFDSDGNLIDAQIRERIKQVLLSL 186 Query: 229 QAFALRLQHKE 197 QAF LRLQ K+ Sbjct: 187 QAFTLRLQKKD 197
>NQR_ARATH (Q9LK88) NADPH:quinone oxidoreductase (EC 1.6.5.2)| Length = 196 Score = 103 bits (256), Expect = 2e-22 Identities = 48/70 (68%), Positives = 57/70 (81%) Frame = -2 Query: 409 FGGGRASLHLREIGIYLDLHFINKPELHIRAYEDPPKFDGEGNLVDAKARERLKKVLLSL 230 FGGGR+ HLR+IG++LDLHFINKPE + A++ P KFD EGNLVD +ERLK+VLLSL Sbjct: 127 FGGGRSQYHLRQIGVFLDLHFINKPEFTLNAFQPPQKFDAEGNLVDEVTKERLKQVLLSL 186 Query: 229 QAFALRLQHK 200 QAF LRLQ K Sbjct: 187 QAFTLRLQGK 196
>NQR2_ORYSA (Q941Y8) Putative NADPH:quinone oxidoreductase 2 (EC 1.6.5.2)| Length = 203 Score = 95.1 bits (235), Expect = 6e-20 Identities = 41/69 (59%), Positives = 57/69 (82%) Frame = -2 Query: 406 GGGRASLHLREIGIYLDLHFINKPELHIRAYEDPPKFDGEGNLVDAKARERLKKVLLSLQ 227 GG R+ H+R++G++LD+HFINKPE+ I+A++ P KFD +GNL+D + +E LK +LLSLQ Sbjct: 127 GGSRSMYHIRQVGVFLDIHFINKPEVFIKAHQPPKKFDSDGNLIDPEIKEELKDMLLSLQ 186 Query: 226 AFALRLQHK 200 AFALRLQ K Sbjct: 187 AFALRLQGK 195
>NQR_SOLTU (Q8H9D2) NAD(P)H:quinone oxidoreductase (EC 1.6.5.2) (NAD(P)H:QR)| Length = 194 Score = 94.4 bits (233), Expect = 9e-20 Identities = 41/70 (58%), Positives = 56/70 (80%) Frame = -2 Query: 409 FGGGRASLHLREIGIYLDLHFINKPELHIRAYEDPPKFDGEGNLVDAKARERLKKVLLSL 230 FGGGR+ HLR+IG++LDLHFINKPE + A++ PPKFD +G L D + ++RL+ VLL+L Sbjct: 123 FGGGRSQYHLRQIGVFLDLHFINKPEFFLNAFQQPPKFDSDGVLTDEETKQRLRAVLLAL 182 Query: 229 QAFALRLQHK 200 QA AL+L+ K Sbjct: 183 QALALKLKGK 192
>YIEF_SHIFL (P0AGE8) Hypothetical protein yieF| Length = 188 Score = 32.7 bits (73), Expect = 0.34 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Frame = -2 Query: 406 GGGRASLHLREIGIYLDLHFINKPELH---IRAYEDPPKFDGEGNLVDAKARERLKKVLL 236 GG R HLR+I ++LD +NKPE I+ DP G ++D + L L Sbjct: 122 GGARCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVDPQ----TGEVIDQGTLDHLTGQLT 177 Query: 235 SLQAFALRLQ 206 + F R++ Sbjct: 178 AFGEFIQRVK 187
>YIEF_ECOLI (P0AGE6) Hypothetical protein yieF| Length = 188 Score = 32.7 bits (73), Expect = 0.34 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Frame = -2 Query: 406 GGGRASLHLREIGIYLDLHFINKPELH---IRAYEDPPKFDGEGNLVDAKARERLKKVLL 236 GG R HLR+I ++LD +NKPE I+ DP G ++D + L L Sbjct: 122 GGARCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVDPQ----TGEVIDQGTLDHLTGQLT 177 Query: 235 SLQAFALRLQ 206 + F R++ Sbjct: 178 AFGEFIQRVK 187
>YIEF_ECO57 (P0AGE7) Hypothetical protein yieF| Length = 188 Score = 32.7 bits (73), Expect = 0.34 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Frame = -2 Query: 406 GGGRASLHLREIGIYLDLHFINKPELH---IRAYEDPPKFDGEGNLVDAKARERLKKVLL 236 GG R HLR+I ++LD +NKPE I+ DP G ++D + L L Sbjct: 122 GGARCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVDPQ----TGEVIDQGTLDHLTGQLT 177 Query: 235 SLQAFALRLQ 206 + F R++ Sbjct: 178 AFGEFIQRVK 187
>HISX_CLOAB (Q97KI2) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 431 Score = 32.0 bits (71), Expect = 0.58 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%) Frame = +2 Query: 221 EGLQREEHLLEPLPGFG----VDEVPLAVELGRVLVRPDVEL 334 EGL R+E +LE L FG VD + A+E+G V+ +E+ Sbjct: 292 EGLSRKEIILEALRNFGAIILVDSISRAIEIGNVVAPEHLEI 333
>HME2_CHICK (Q05917) Homeobox protein engrailed-2 (Gg-En-2)| Length = 288 Score = 31.6 bits (70), Expect = 0.76 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 3/76 (3%) Frame = -1 Query: 407 RRRQGVAPPARDRDIPGPALHQQAGAPHQGVRGPAQVXXXXXXXXRQSQGAAQEG---AP 237 RR A PA +PG G+P +G GPA + GAA++G A Sbjct: 82 RRSPAAAAPAPGAPVPGGGGGGGGGSPGRGEGGPAALAL---------HGAAKKGGDPAA 132 Query: 236 LAAGLRAQAPTQGELS 189 L A L+A+ + ELS Sbjct: 133 LEAALKARGLSGAELS 148
>RRBP1_CANFA (Q28298) Ribosome-binding protein 1 (180 kDa ribosome receptor)| (RRp) Length = 1534 Score = 30.8 bits (68), Expect = 1.3 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = -1 Query: 335 GAPHQGVRGPAQVXXXXXXXXRQSQGAAQEGAPLAAGLRAQAPTQGELSE 186 GAP+QG + A +QG EGAP AP QG+ +E Sbjct: 574 GAPNQGKKAEAAPNQGKKAEGAPNQGKKAEGAPNQGKKAEAAPNQGKKAE 623 Score = 30.4 bits (67), Expect = 1.7 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = -1 Query: 335 GAPHQGVRGPAQVXXXXXXXXRQSQGAAQEGAPLAAGLRAQAPTQGELSE 186 GAP+QG + A +QG EGAP AP QG+ +E Sbjct: 604 GAPNQGKKAEAAPNQGKKAEGAPNQGKKAEGAPNQGKKAEGAPNQGKKAE 653 Score = 29.3 bits (64), Expect = 3.7 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = -1 Query: 335 GAPHQGVRGPAQVXXXXXXXXRQSQGAAQEGAPLAAGLRAQAPTQGELSE 186 GAP+QG + +QG EGAP AP QG+ +E Sbjct: 594 GAPNQGKKAEGAPNQGKKAEAAPNQGKKAEGAPNQGKKAEGAPNQGKKAE 643 Score = 29.3 bits (64), Expect = 3.7 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = -1 Query: 335 GAPHQGVRGPAQVXXXXXXXXRQSQGAAQEGAPLAAGLRAQAPTQGELSE 186 GAP+QG + +QG EGAP AP QG+ +E Sbjct: 564 GAPNQGKKAEGAPNQGKKAEAAPNQGKKAEGAPNQGKKAEGAPNQGKKAE 613 Score = 29.3 bits (64), Expect = 3.7 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = -1 Query: 335 GAPHQGVRGPAQVXXXXXXXXRQSQGAAQEGAPLAAGLRAQAPTQGELSE 186 GAP+QG + +QG EGAP AP QG+ +E Sbjct: 544 GAPNQGKKAEGAPNQGKKAEGAPNQGKKAEGAPNQGKKAEAAPNQGKKAE 593 Score = 28.1 bits (61), Expect = 8.3 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = -1 Query: 335 GAPHQGVRGPAQVXXXXXXXXRQSQGAAQEGAPLAAGLRAQAPTQGELSE 186 GA +QG + Q+QG EGAP AP QG+ +E Sbjct: 514 GAQNQGKKAEGTPNQGKKAEGAQNQGKKAEGAPNQGKKAEGAPNQGKKAE 563
>PYRB_METKA (Q8TVB2) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 309 Score = 30.8 bits (68), Expect = 1.3 Identities = 21/64 (32%), Positives = 34/64 (53%) Frame = +2 Query: 221 EGLQREEHLLEPLPGFGVDEVPLAVELGRVLVRPDVELRLVDEVQVQVYPDLAQVERRPA 400 E L+ H+LE L G EV +L +L PD+++ V +Q +++PD + ER Sbjct: 190 EELRMPSHILEELEQIGA-EVEEHRDLEEIL--PDLDVLYVTRIQREMFPDPEEFERVKG 246 Query: 401 SSEV 412 S +V Sbjct: 247 SYKV 250
>ANDR_MOUSE (P19091) Androgen receptor (Dihydrotestosterone receptor)| Length = 899 Score = 30.0 bits (66), Expect = 2.2 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Frame = -1 Query: 410 LRRRQGVAPPARDRDIPGPALHQQAGAPHQGVRGPAQVXXXXXXXXRQSQGAAQEGAPLA 231 L++RQ +P R R H + G+P +RGP Q AA EG P + Sbjct: 54 LQQRQETSPRRRRRQ-----QHTEDGSPQAHIRGPTGYLALEEEQQPSQQQAASEGHPES 108 Query: 230 AGL----RAQAPTQG 198 + L A AP +G Sbjct: 109 SCLPEPGAATAPGKG 123
>GAT6A_XENLA (Q91678) GATA-binding factor 6-A (Transcription factor xGATA-6A)| Length = 391 Score = 29.6 bits (65), Expect = 2.9 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%) Frame = +3 Query: 219 AKACSERSTFLSRSLALASTRF---PSPSNLGGSSYALMWSSGLLMKCRSRYIPISR 380 ++A SE S+F + S S+R+ PSP GS+ +SS L + R +Y P++R Sbjct: 66 SQATSESSSF-NNSSPHTSSRYHYPPSPPMHNGSTRDTGYSSSLTVSSRDQYTPLAR 121
>MUTS_SYNY3 (P73769) DNA mismatch repair protein mutS| Length = 878 Score = 29.3 bits (64), Expect = 3.7 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = -2 Query: 382 LREIGIYLDLHFINKPELHIRAYEDPPKFDGEGNLVDAKARERLKKVLLSLQ 227 L E+G Y+ H + P LHIR EGNL+ + L ++ SL+ Sbjct: 437 LEELGKYVLAHIVENPPLHIR----------EGNLIRSGVNPTLDEMRQSLE 478
>GAT6B_XENLA (P70005) GATA-binding factor 6-B (Transcription factor xGATA-6B)| Length = 391 Score = 28.9 bits (63), Expect = 4.9 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%) Frame = +3 Query: 219 AKACSERSTFLSRSLALASTRF---PSPSNLGGSSYALMWSSGLLMKCRSRYIPISR 380 ++A SE S++ S S S+R+ PSP GS+ +SS L + R +Y P++R Sbjct: 66 SQATSESSSYSSSS-PHPSSRYHYSPSPPMANGSTRDTGYSSSLAVSGRDQYAPLAR 121
>HOFB_HAEIN (P44622) Protein transport protein hofB homolog| Length = 464 Score = 28.5 bits (62), Expect = 6.4 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -2 Query: 379 REIGIYLDLHFINKPELHIRAYEDPPKFDGEG 284 + I +Y L ++N P+ HI EDP + + +G Sbjct: 270 KSISLYTALQWLNTPDKHIMTAEDPIEIELDG 301
>VIT2_CAEEL (P05690) Vitellogenin 2 precursor| Length = 1613 Score = 28.1 bits (61), Expect = 8.3 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +3 Query: 174 DLQFFTQFSLCWSLSAKACSERSTF 248 D+ + T + C+SL AK CSE TF Sbjct: 1322 DVLYNTPLTTCYSLIAKDCSEEPTF 1346
>NODD2_RHITR (P32008) Nodulation protein D 2| Length = 314 Score = 28.1 bits (61), Expect = 8.3 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = +2 Query: 260 PGFGVDEVPLAVELGRVLVRPDVELRLVDEVQVQVYPDLAQVE 388 PG D +PLA + +L R D++ ++ E+ + ++P A E Sbjct: 124 PGISFDCLPLADDFEELLRRGDIDFLIMPELFMSMHPHAALFE 166
>VIT1_CAEEL (P55155) Vitellogenin 1 precursor| Length = 1616 Score = 28.1 bits (61), Expect = 8.3 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +3 Query: 174 DLQFFTQFSLCWSLSAKACSERSTF 248 D+ + T + C+SL AK CSE TF Sbjct: 1324 DVLYNTPLTTCYSLIAKDCSEEPTF 1348 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,508,025 Number of Sequences: 219361 Number of extensions: 950405 Number of successful extensions: 3376 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3212 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3369 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
