>gb|AY106272.1| Zea mays PCO085431 mRNA sequence
          Length = 1019

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 210 agcctgagcgcgaaggcctgcagcgagaggagcaccttcttgagccgctc 259
           |||||||||| ||||||||| || || |||||||| ||||||||||||||
Sbjct: 743 agcctgagcgtgaaggcctgaagggataggagcactttcttgagccgctc 694

>gb|AC161049.2| Mus musculus BAC clone RP24-94D6 from chromosome 12, complete sequence
          Length = 193424

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 186    ttcactcagttctccttgtgtt 207
              ||||||||||||||||||||||
Sbjct: 116994 ttcactcagttctccttgtgtt 116973

>emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segment 2/7
          Length = 349652

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 269   ggcgtcgacgaggttcccctcg 290
             ||||||||||||||||||||||
Sbjct: 10903 ggcgtcgacgaggttcccctcg 10924

>ref|NM_136468.1| Drosophila melanogaster CG12826-RA (CG12826), mRNA
          Length = 393

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 303 ggcgggtcctcgtacgccctga 324
           ||||||||||||||||||||||
Sbjct: 136 ggcgggtcctcgtacgccctga 157

>dbj|AK142908.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:D930045J05 product:unclassifiable, full
            insert sequence
          Length = 4934

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 186  ttcactcagttctccttgtgtt 207
            ||||||||||||||||||||||
Sbjct: 4621 ttcactcagttctccttgtgtt 4642

>gb|AC093046.1| Drosophila melanogaster, chromosome 2R, region 43D-43E, BAC clone
             BACR29D02, complete sequence
          Length = 158372

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 303   ggcgggtcctcgtacgccctga 324
             ||||||||||||||||||||||
Sbjct: 91477 ggcgggtcctcgtacgccctga 91456

>gb|AC008259.4|AC008259 Drosophila melanogaster, chromosome 2R, region 43D-43D, BAC clone
              BACR04H12, complete sequence
          Length = 175285

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 303    ggcgggtcctcgtacgccctga 324
              ||||||||||||||||||||||
Sbjct: 163994 ggcgggtcctcgtacgccctga 163973

>gb|AE003840.3| Drosophila melanogaster chromosome 2R, section 10 of 73 of the complete
              sequence
          Length = 272100

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 303    ggcgggtcctcgtacgccctga 324
              ||||||||||||||||||||||
Sbjct: 154398 ggcgggtcctcgtacgccctga 154377

>gb|AC005447.1|AC005447 Drosophila melanogaster, chromosome 2R, region 43E5-43E10, P1 clone
             DS03503, complete sequence
          Length = 77907

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 303   ggcgggtcctcgtacgccctga 324
             ||||||||||||||||||||||
Sbjct: 68646 ggcgggtcctcgtacgccctga 68625

>ref|XM_864979.1| PREDICTED: Bos taurus similar to Transcription elongation factor A
           protein 2 (Transcription elongation factor S-II protein
           2) (Testis-specific S-II) (Transcription elongation
           factor TFIIS.l), transcript variant 2 (LOC507729), mRNA
          Length = 1174

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 254 ccgctccctggctttggcgtc 274
           |||||||||||||||||||||
Sbjct: 359 ccgctccctggctttggcgtc 339

>ref|XM_874632.1| PREDICTED: Bos taurus similar to Transcription elongation factor A
           protein 2 (Transcription elongation factor S-II protein
           2) (Testis-specific S-II) (Transcription elongation
           factor TFIIS.l), transcript variant 7 (LOC507729), mRNA
          Length = 1349

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 254 ccgctccctggctttggcgtc 274
           |||||||||||||||||||||
Sbjct: 359 ccgctccctggctttggcgtc 339

>ref|XM_874469.1| PREDICTED: Bos taurus similar to Transcription elongation factor A
           protein 2 (Transcription elongation factor S-II protein
           2) (Testis-specific S-II) (Transcription elongation
           factor TFIIS.l), transcript variant 5 (LOC507729), mRNA
          Length = 1176

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 254 ccgctccctggctttggcgtc 274
           |||||||||||||||||||||
Sbjct: 346 ccgctccctggctttggcgtc 326

>ref|XM_874384.1| PREDICTED: Bos taurus similar to Transcription elongation factor A
           protein 2 (Transcription elongation factor S-II protein
           2) (Testis-specific S-II) (Transcription elongation
           factor TFIIS.l), transcript variant 4 (LOC507729), mRNA
          Length = 1186

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 254 ccgctccctggctttggcgtc 274
           |||||||||||||||||||||
Sbjct: 359 ccgctccctggctttggcgtc 339

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 240     agcaccttcttgagccgctcc 260
               |||||||||||||||||||||
Sbjct: 3334782 agcaccttcttgagccgctcc 3334802

>gb|AC136524.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0474A01,
             complete sequence
          Length = 140077

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 276   acgaggttcccctcgccgtcgaac 299
             ||||||||||||| ||||||||||
Sbjct: 59370 acgaggttccccttgccgtcgaac 59347

>gb|AC140232.2| Mus musculus BAC clone RP24-498F17 from chromosome 5, complete sequence
          Length = 183612

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   gagccgctccctggctttgg 270
             ||||||||||||||||||||
Sbjct: 69322 gagccgctccctggctttgg 69341

>emb|AL160257.12| Human DNA sequence from clone RP11-77O2 on chromosome 13, complete
            sequence
          Length = 62107

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 3    tacaagcatctttttatttt 22
            ||||||||||||||||||||
Sbjct: 4878 tacaagcatctttttatttt 4859

>emb|AL132822.15|HSJ1017F8 Human DNA sequence from clone RP5-1017F8 on chromosome 20 Contains a
             novel gene, part of a novel gene (LOC284757) and a CpG
             island, complete sequence
          Length = 118873

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    gaaaccagggccatagccca 108
             ||||||||||||||||||||
Sbjct: 15804 gaaaccagggccatagccca 15785

>emb|AL589651.8| Mouse DNA sequence from clone RP23-138F20 on chromosome 13 Contains five
              genes for olfactory receptors, a novel gene, the H1f5 gene
              for H1 histone family member 5, three genes and one
              pseudogene for H2a histone family members, four genes for
              H2b, two genes for H4, and two genes for H3 histone family
              members and seven CpG islands, complete sequence
          Length = 222823

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    tcagttcttcactcagttct 198
              ||||||||||||||||||||
Sbjct: 200029 tcagttcttcactcagttct 200010

>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I,
              complete sequence
          Length = 691920

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 6      aagcatctttttattttacggaag 29
              |||||||| |||||||||||||||
Sbjct: 464460 aagcatctatttattttacggaag 464437

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 270    gcgtcgacgaggttcccctcgccg 293
              |||||||||||||||| |||||||
Sbjct: 672219 gcgtcgacgaggttccgctcgccg 672196

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 276      acgaggttcccctcgccgtcgaac 299
                ||||||||||||| ||||||||||
Sbjct: 14111815 acgaggttccccttgccgtcgaac 14111792

>dbj|AK058638.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-D08, full
           insert sequence
          Length = 1230

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 276 acgaggttcccctcgccgtcgaac 299
           ||||||||||||| ||||||||||
Sbjct: 227 acgaggttccccttgccgtcgaac 204


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,405,059
Number of Sequences: 3902068
Number of extensions: 3405059
Number of successful extensions: 60999
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60888
Number of HSP's gapped (non-prelim): 111
length of query: 413
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 391
effective length of database: 17,147,199,772
effective search space: 6704555110852
effective search space used: 6704555110852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)