ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FLS_CITUN (Q9ZWQ9) Flavonol synthase/flavanone 3-hydroxylase (EC... 38 0.010
2GAOX1_ORYSA (P93771) Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gi... 35 0.084
3HY6H_HYONI (P24397) Hyoscyamine 6-dioxygenase (EC 1.14.11.11) (H... 35 0.084
4FLS_EUSGR (Q9M547) Flavonol synthase/flavanone 3-hydroxylase (EC... 34 0.19
5DV4H_CATRO (O04847) Desacetoxyvindoline 4-hydroxylase (EC 1.14.1... 33 0.42
6ACCO1_BRAJU (Q09052) 1-aminocyclopropane-1-carboxylate oxidase (... 33 0.42
7ACCO_DENCR (Q9ZQZ1) 1-aminocyclopropane-1-carboxylate oxidase (E... 33 0.42
8ACCO_ACTCH (P31237) 1-aminocyclopropane-1-carboxylate oxidase (E... 32 0.93
9G2OX1_ARATH (Q8LEA2) Gibberellin 2-beta-dioxygenase 1 (EC 1.14.1... 31 1.6
10G2OX3_ARATH (O64692) Gibberellin 2-beta-dioxygenase 3 (EC 1.14.1... 30 2.1
11G2OX2_PEA (Q9XHM5) Gibberellin 2-beta-dioxygenase 2 (EC 1.14.11.... 30 2.1
12GAOX1_ARATH (Q39110) Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gi... 30 2.7
13G2OX7_ARATH (Q9C6I4) Gibberellin 2-beta-dioxygenase 7 (EC 1.14.1... 30 3.5
14ACCO2_LYCES (P07920) 1-aminocyclopropane-1-carboxylate oxidase 2... 30 3.5
15GAO1B_WHEAT (O04706) Gibberellin 20 oxidase 1-B (EC 1.14.11.-) (... 29 4.6
16GAO1A_WHEAT (O04707) Gibberellin 20 oxidase 1-A (EC 1.14.11.-) (... 29 4.6
17ACKA_STAES (Q8CS60) Acetate kinase (EC 2.7.2.1) (Acetokinase) 29 4.6
18ACKA_STAEQ (Q5HNJ4) Acetate kinase (EC 2.7.2.1) (Acetokinase) 29 4.6
19PRKDC_HUMAN (P78527) DNA-dependent protein kinase catalytic subu... 29 4.6
20GAO1D_WHEAT (O04705) Gibberellin 20 oxidase 1-D (EC 1.14.11.-) (... 29 6.0
21PTPRK_MOUSE (P35822) Receptor-type tyrosine-protein phosphatase ... 28 7.9
22PTPRK_HUMAN (Q15262) Receptor-type tyrosine-protein phosphatase ... 28 7.9
23G3OX1_ARATH (Q39103) Gibberellin 3-beta-dioxygenase 1 (EC 1.14.1... 28 7.9

>FLS_CITUN (Q9ZWQ9) Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23)|
           (EC 1.14.11.9) (FLS) (CitFLS)
          Length = 335

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -3

Query: 445 VHRVVTNAEKERLSLVLVYTLELETQLEPVSELVDDKRPARYMKIKLNDY 296
           +HR   N +K R+S  +      +T + P+ +LVDD+ P +Y   K  DY
Sbjct: 276 LHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 325



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>GAOX1_ORYSA (P93771) Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gibberellin C-20|
           oxidase 1) (GA 20-oxidase 1) (Os20ox)
          Length = 372

 Score = 35.0 bits (79), Expect = 0.084
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 445 VHRVVTNAEKERLSLVLVYTLELETQLEPVSELVDDKRPARY 320
           +HR V N+   R SL      E++T + P  ELVDD  P  Y
Sbjct: 289 LHRAVVNSTAPRRSLAFFLCPEMDTVVRPPEELVDDHHPRVY 330



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>HY6H_HYONI (P24397) Hyoscyamine 6-dioxygenase (EC 1.14.11.11) (Hyoscyamine|
           6-beta-hydroxylase)
          Length = 344

 Score = 35.0 bits (79), Expect = 0.084
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = -3

Query: 445 VHRVVTNAEKERLSLVLVYTLELETQLEPVSELVDDKRPARYMKIKLNDYMEKY 284
           +HRVVT+  ++R+S+  +   +    +EP  EL++   P  Y     +++ + Y
Sbjct: 273 IHRVVTDPTRDRVSIATLIGPDYSCTIEPAKELLNQDNPPLYKPYSYSEFADIY 326



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>FLS_EUSGR (Q9M547) Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23)|
           (EC 1.14.11.9) (FLS)
          Length = 334

 Score = 33.9 bits (76), Expect = 0.19
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -3

Query: 442 HRVVTNAEKERLSLVLVYTLELETQLEPVSELVDDKRPARYMKIKLNDY 296
           HR   N EK R+S  +      + ++ P+ +LV+++ PA++   K  DY
Sbjct: 276 HRTTVNKEKTRMSWPVFLEPPPDHEVGPIPKLVNEENPAKFKTKKYKDY 324



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>DV4H_CATRO (O04847) Desacetoxyvindoline 4-hydroxylase (EC 1.14.11.20)|
          Length = 401

 Score = 32.7 bits (73), Expect = 0.42
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
 Frame = -3

Query: 442 HRVVTNAEKERLSLVLVYTLELETQ-------LEPVSELVDDKRPARYMKIKLNDYM 293
           HRV+ N    R+S+ + + ++ +TQ         P+ EL+ ++ P  Y ++ + D++
Sbjct: 324 HRVLANKVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPPIYKEVTVKDFI 380



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>ACCO1_BRAJU (Q09052) 1-aminocyclopropane-1-carboxylate oxidase (EC 1.14.17.4)|
           (ACC oxidase) (Ethylene-forming enzyme) (EFE)
          Length = 320

 Score = 32.7 bits (73), Expect = 0.42
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -3

Query: 445 VHRVVTNAEKERLSLVLVYTLELETQLEPVSELVDDKRPARYMKIKLNDYMEKY 284
           +HRVVT  E  R+S+   Y    + ++ P S L    +   Y     +DYM+ Y
Sbjct: 236 MHRVVTQKEGNRMSIASFYNPGSDAEISPASSLA--CKETEYPSFVFDDYMKLY 287



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>ACCO_DENCR (Q9ZQZ1) 1-aminocyclopropane-1-carboxylate oxidase (EC 1.14.17.4)|
           (ACC oxidase) (Ethylene-forming enzyme) (EFE)
          Length = 318

 Score = 32.7 bits (73), Expect = 0.42
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = -3

Query: 445 VHRVVTNAEKERLSLVLVYTLELETQLEPVSELVD----DKRPARYMKIKLNDYMEKY 284
           +HRVV      R+S+   Y    +  + P  ELV+    +K+   Y K    DYM+ Y
Sbjct: 231 MHRVVAQTNGNRMSIASFYNPGSDAVIFPAPELVEKEAAEKKKETYPKFVFEDYMKLY 288



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>ACCO_ACTCH (P31237) 1-aminocyclopropane-1-carboxylate oxidase (EC 1.14.17.4)|
           (ACC oxidase) (Ethylene-forming enzyme) (EFE)
          Length = 319

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -3

Query: 445 VHRVVTNAEKERLSLVLVYTLELETQLEPVSELVD---DKRPARYMKIKLNDYMEKY 284
           +HRV+   +  R+S+   Y    +  + P   LVD   D++   Y K    DYM+ Y
Sbjct: 233 MHRVIAQPDGNRMSIASFYNPGSDAVMYPAPALVDKEEDQQKQVYPKFVFEDYMKLY 289



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>G2OX1_ARATH (Q8LEA2) Gibberellin 2-beta-dioxygenase 1 (EC 1.14.11.13)|
           (Gibberellin 2-beta-hydroxylase 1) (Gibberellin
           2-oxidase 1) (GA 2-oxidase 1)
          Length = 329

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/56 (23%), Positives = 31/56 (55%)
 Frame = -3

Query: 442 HRVVTNAEKERLSLVLVYTLELETQLEPVSELVDDKRPARYMKIKLNDYMEKYHDT 275
           HRV+ N +K R+S++      L  ++ P++ L+D++    Y +   ++Y    +++
Sbjct: 254 HRVLANCKKSRVSMIYFAGPSLTQRIAPLTCLIDNEDERLYEEFTWSEYKNSTYNS 309



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>G2OX3_ARATH (O64692) Gibberellin 2-beta-dioxygenase 3 (EC 1.14.11.13)|
           (Gibberellin 2-beta-hydroxylase 3) (Gibberellin
           2-oxidase 3) (GA 2-oxidase 3)
          Length = 335

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 442 HRVVTNAEKERLSLVLVYTLELETQLEPVSELVDDKRPARYMKIKLNDY 296
           HRVVTN ++ R+S++      L  ++ P+S LV  +    Y +   + Y
Sbjct: 259 HRVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPKQDDCLYNEFTWSQY 307



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>G2OX2_PEA (Q9XHM5) Gibberellin 2-beta-dioxygenase 2 (EC 1.14.11.13)|
           (Gibberellin 2-beta-hydroxylase 2) (Gibberellin
           2-oxidase 2) (GA 2-oxidase 2)
          Length = 345

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 442 HRVVTNAEKERLSLVLVYTLELETQLEPVSELVDDKRPARYMKIKLNDYME 290
           HRV+TN  K R+S++      L   + P+S++V    P  Y       Y +
Sbjct: 266 HRVLTNTTKPRMSMMYFAAPPLNWLISPLSKMVTAHSPCLYRPFTWAQYKQ 316



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>GAOX1_ARATH (Q39110) Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gibberellin C-20|
           oxidase 1) (GA 20-oxidase 1) (AtGA20ox)
          Length = 377

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 445 VHRVVTNAEKERLSLVLVYTLELETQLEPVSELVDDKRPARYMKIKLNDYME 290
           +HR V N+E ER SL      + +  + P  EL+D     RY     + ++E
Sbjct: 302 LHRAVVNSESERKSLAFFLCPKKDRVVTPPRELLDSITSRRYPDFTWSMFLE 353



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>G2OX7_ARATH (Q9C6I4) Gibberellin 2-beta-dioxygenase 7 (EC 1.14.11.13)|
           (Gibberellin 2-beta-hydroxylase 7) (Gibberellin
           2-oxidase 7) (GA 2-oxidase 7)
          Length = 336

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 442 HRVVTNAEKERLSLVLVYTLELETQLEPVSELVDDKRPARYMKIKLNDYMEK-YHDTYAT 266
           HRV++ A  ER+S+       LET+++          P +Y +    +Y E+  HD   T
Sbjct: 272 HRVISPANIERMSIAFFVCPYLETEIDCFG------YPKKYRRFSFREYKEQSEHDVKET 325

Query: 265 G 263
           G
Sbjct: 326 G 326



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>ACCO2_LYCES (P07920) 1-aminocyclopropane-1-carboxylate oxidase 2 (EC 1.14.17.4)|
           (ACC oxidase 2) (Ethylene-forming enzyme) (EFE) (Protein
           GTOMA)
          Length = 316

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = -3

Query: 445 VHRVVTNAEKERLSLVLVYTLELETQLEPVSELVDDKRPAR----YMKIKLNDYMEKY 284
           +HRV+   +  R+SL   Y    +  + P   LVD +        Y K   +DYM+ Y
Sbjct: 233 MHRVIAQKDGTRMSLASFYNPGNDALIYPAPALVDKEAEEHNKQVYPKFMFDDYMKLY 290



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>GAO1B_WHEAT (O04706) Gibberellin 20 oxidase 1-B (EC 1.14.11.-) (Gibberellin|
           C-20 oxidase 1-B) (GA 20-oxidase 1-B) (Ta20ox1B)
           (TaGA20ox1-B)
          Length = 365

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -3

Query: 445 VHRVVTNAEKERLSLVLVYTLELETQLEPVSELVDDKRPARYMKI---KLNDYMEKYH 281
           +HR V N++  R SL      E++  + P   LVD   P  Y       L D+ +K++
Sbjct: 279 LHRAVVNSKVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHY 336



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>GAO1A_WHEAT (O04707) Gibberellin 20 oxidase 1-A (EC 1.14.11.-) (Gibberellin|
           C-20 oxidase 1-B) (GA 20-oxidase 1-A) (Ta20ox1A)
           (TaGA20ox1-A)
          Length = 365

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -3

Query: 445 VHRVVTNAEKERLSLVLVYTLELETQLEPVSELVDDKRPARYMKI---KLNDYMEKYH 281
           +HR V N+   R SL      E++  + P   LVD   P  Y       L D+ +K++
Sbjct: 279 LHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDASNPRAYPDFTWRSLLDFTQKHY 336



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>ACKA_STAES (Q8CS60) Acetate kinase (EC 2.7.2.1) (Acetokinase)|
          Length = 417

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = -3

Query: 442 HRVVTNAEKERLSLVLVYTLELETQLEPVSELVDDKRPARYMKIK 308
           HRVV   E    S+V+  T E+E+Q+E +SEL     PA  M I+
Sbjct: 89  HRVVHGGETFPKSVVV--TDEVESQIEELSELAPLHNPANLMGIR 131



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>ACKA_STAEQ (Q5HNJ4) Acetate kinase (EC 2.7.2.1) (Acetokinase)|
          Length = 417

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = -3

Query: 442 HRVVTNAEKERLSLVLVYTLELETQLEPVSELVDDKRPARYMKIK 308
           HRVV   E    S+V+  T E+E+Q+E +SEL     PA  M I+
Sbjct: 89  HRVVHGGETFPKSVVV--TDEVESQIEELSELAPLHNPANLMGIR 131



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>PRKDC_HUMAN (P78527) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)|
            (DNA-PK catalytic subunit) (DNA-PKcs) (DNPK1) (p460)
          Length = 4128

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 148  FTYFPDFCVCTPHVKCWAACVVALNPNIKLIRCGQHTDVKDGIKLID 8
            F++FP F  C   + C  A +++L+P      C        GI+L++
Sbjct: 2848 FSFFPPFVSCIQDISCQHAALLSLDPAAVSAGCLASLQQPVGIRLLE 2894



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>GAO1D_WHEAT (O04705) Gibberellin 20 oxidase 1-D (EC 1.14.11.-) (Gibberellin|
           C-20 oxidase 1-D) (GA 20-oxidase 1-D) (Ta20ox1D)
           (TaGA20ox1-D) (Protein Wga20)
          Length = 361

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -3

Query: 445 VHRVVTNAEKERLSLVLVYTLELETQLEPVSELVDDKRPARYMKI---KLNDYMEKYH 281
           +HR V N+   R SL      E++  + P   LVD   P  Y       L D+ +K++
Sbjct: 279 LHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHY 336



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>PTPRK_MOUSE (P35822) Receptor-type tyrosine-protein phosphatase kappa precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase kappa)
           (R-PTP-kappa)
          Length = 1457

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 116 STHTKIWEIGKNVNSLQTGQRKILHHRSYSASLHTSE 226
           + H K+W   +N   +   Q K ++HR ++AS    E
Sbjct: 222 AVHNKLWLQRRNGEDIPVAQTKNINHRRFAASFRLQE 258



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>PTPRK_HUMAN (Q15262) Receptor-type tyrosine-protein phosphatase kappa precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase kappa)
           (R-PTP-kappa)
          Length = 1439

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 116 STHTKIWEIGKNVNSLQTGQRKILHHRSYSASLHTSE 226
           + H K+W   +N   +   Q K ++HR ++AS    E
Sbjct: 223 AVHNKLWLQRRNGEDIPVAQTKNINHRRFAASFRLQE 259



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>G3OX1_ARATH (Q39103) Gibberellin 3-beta-dioxygenase 1 (EC 1.14.11.15)|
           (Gibberellin 3 beta-hydroxylase 1) (GA 3-oxidase 1)
           (AtGA3ox1)
          Length = 358

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -3

Query: 445 VHRVVTNAEKERLSLVLVYTLELETQLEPVSELVDDKRPARYMKIKLNDYM 293
           +HR   N  + RLS+  ++  + + ++ PV +LV       Y  +   +Y+
Sbjct: 288 LHRARVNQTRARLSVAFLWGPQSDIKISPVPKLVSPVESPLYQSVTWKEYL 338


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,693,936
Number of Sequences: 219361
Number of extensions: 1337209
Number of successful extensions: 3687
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3684
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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