ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018744.1| Zea mays clone EL01N0521F07.d mRNA sequence 109 8e-21
2gb|AF297046.1| Zea mays homocysteine S-methyltransferase-3 mRNA,... 109 8e-21
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
4dbj|AK065892.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 8e-21
5gb|AY104031.1| Zea mays PCO134410 mRNA sequence 109 8e-21
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 109 8e-21
7emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa... 109 8e-21
8dbj|AK103293.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
9gb|AF297045.1| Zea mays homocysteine S-methyltransferase-2 mRNA,... 92 2e-15
10ref|NM_113173.2| Arabidopsis thaliana HMT3; homocysteine S-methy... 42 1.5
11gb|AF297394.1| Arabidopsis thaliana homocysteine S-methyltransfe... 42 1.5
12emb|BX823839.1|CNS0A4YF Arabidopsis thaliana Full-length cDNA Co... 42 1.5
13gb|BT005318.1| Arabidopsis thaliana At3g22740 mRNA, complete cds 42 1.5
14gb|AY087554.1| Arabidopsis thaliana clone 36591 mRNA, complete s... 42 1.5
15dbj|AK118021.1| Arabidopsis thaliana At3g22740 mRNA for putative... 42 1.5
16dbj|AB022223.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 1.5
17gb|AC125279.1| Mus musculus BAC clone RP23-433F5 from 8, complet... 40 6.0
18gb|AC122158.17| Mus musculus strain 129/Sv clone ct7-433o3 map 1... 40 6.0
19emb|AL078582.13|HSDJ130E4 Human DNA sequence from clone RP1-130E... 40 6.0
20gb|AC117463.5| Homo sapiens 3 BAC RP11-452B4 (Roswell Park Cance... 40 6.0
21gb|AC107065.5| Bos taurus clone rp42-513g13, complete sequence 40 6.0
22gb|AC156550.5| Mus musculus chromosome 15, clone RP23-353K7, com... 40 6.0 
>gb|BT018744.1| Zea mays clone EL01N0521F07.d mRNA sequence
          Length = 1423

 Score =  109 bits (55), Expect = 8e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                       
Query: 354 ttggttaagagatctacttattgctctgatggtgtttggagttgtcctgcagcagccccc 413
           ||||||||||| |||   ||| || ||||| |||||||||||||||||||||||||||||
Sbjct: 947 ttggttaagagttctgtgtatggccctgatagtgtttggagttgtcctgcagcagccccc 888

                                      
Query: 414 gataagggcagccccatctttgcacca 440
           |||||| ||||||||||||||||||||
Sbjct: 887 gataagcgcagccccatctttgcacca 861
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>gb|AF297046.1| Zea mays homocysteine S-methyltransferase-3 mRNA, complete cds
          Length = 1583

 Score =  109 bits (55), Expect = 8e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                        
Query: 354  ttggttaagagatctacttattgctctgatggtgtttggagttgtcctgcagcagccccc 413
            ||||||||||| |||   ||| || ||||| |||||||||||||||||||||||||||||
Sbjct: 1115 ttggttaagagttctgtgtatggccctgatagtgtttggagttgtcctgcagcagccccc 1056

                                       
Query: 414  gataagggcagccccatctttgcacca 440
            |||||| ||||||||||||||||||||
Sbjct: 1055 gataagcgcagccccatctttgcacca 1029
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  109 bits (55), Expect = 8e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                            
Query: 354      ttggttaagagatctacttattgctctgatggtgtttggagttgtcctgcagcagccccc 413
                ||||||||| ||||||||||| ||  ||||||||||||||||||||||||||||||| ||
Sbjct: 25678513 ttggttaagtgatctacttatggccttgatggtgtttggagttgtcctgcagcagccgcc 25678454

                                           
Query: 414      gataagggcagccccatctttgcacca 440
                 || ||| |||||||||||||||||||
Sbjct: 25678453 aatgaggacagccccatctttgcacca 25678427
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>dbj|AK065892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044M21, full
            insert sequence
          Length = 1557

 Score =  109 bits (55), Expect = 8e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                        
Query: 354  ttggttaagagatctacttattgctctgatggtgtttggagttgtcctgcagcagccccc 413
            ||||||||| ||||||||||| ||  ||||||||||||||||||||||||||||||| ||
Sbjct: 1102 ttggttaagtgatctacttatggccttgatggtgtttggagttgtcctgcagcagccgcc 1043

                                       
Query: 414  gataagggcagccccatctttgcacca 440
             || ||| |||||||||||||||||||
Sbjct: 1042 aatgaggacagccccatctttgcacca 1016
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>gb|AY104031.1| Zea mays PCO134410 mRNA sequence
          Length = 1600

 Score =  109 bits (55), Expect = 8e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                        
Query: 354  ttggttaagagatctacttattgctctgatggtgtttggagttgtcctgcagcagccccc 413
            ||||||||||| |||   ||| || ||||| |||||||||||||||||||||||||||||
Sbjct: 1125 ttggttaagagttctgtgtatggccctgatagtgtttggagttgtcctgcagcagccccc 1066

                                       
Query: 414  gataagggcagccccatctttgcacca 440
            |||||| ||||||||||||||||||||
Sbjct: 1065 gataagcgcagccccatctttgcacca 1039
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  109 bits (55), Expect = 8e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                            
Query: 354      ttggttaagagatctacttattgctctgatggtgtttggagttgtcctgcagcagccccc 413
                ||||||||| ||||||||||| ||  ||||||||||||||||||||||||||||||| ||
Sbjct: 25606689 ttggttaagtgatctacttatggccttgatggtgtttggagttgtcctgcagcagccgcc 25606630

                                           
Query: 414      gataagggcagccccatctttgcacca 440
                 || ||| |||||||||||||||||||
Sbjct: 25606629 aatgaggacagccccatctttgcacca 25606603
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>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 167131

 Score =  109 bits (55), Expect = 8e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                         
Query: 354   ttggttaagagatctacttattgctctgatggtgtttggagttgtcctgcagcagccccc 413
             ||||||||| ||||||||||| ||  ||||||||||||||||||||||||||||||| ||
Sbjct: 45751 ttggttaagtgatctacttatggccttgatggtgtttggagttgtcctgcagcagccgcc 45692

                                        
Query: 414   gataagggcagccccatctttgcacca 440
              || ||| |||||||||||||||||||
Sbjct: 45691 aatgaggacagccccatctttgcacca 45665
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>dbj|AK103293.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125A08, full
            insert sequence
          Length = 1791

 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Minus

                                                                        
Query: 354  ttggttaagagatctacttattgctctgatggtgtttggagttgtcctgcagcagccccc 413
            ||||||||| |||| |||||| ||  ||||||||||||||||||||||||||||||| ||
Sbjct: 1331 ttggttaagtgatccacttatggccttgatggtgtttggagttgtcctgcagcagccgcc 1272

                                       
Query: 414  gataagggcagccccatctttgcacca 440
             || ||| |||||||||||||||||||
Sbjct: 1271 aatgaggacagccccatctttgcacca 1245
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>gb|AF297045.1| Zea mays homocysteine S-methyltransferase-2 mRNA, complete cds
          Length = 1535

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 61/66 (92%)
 Strand = Plus / Minus

                                                                        
Query: 379  ctgatggtgtttggagttgtcctgcagcagcccccgataagggcagccccatctttgcac 438
            ||||| |||||||||||||||||||||||||| ||||||||  ||||||| |||||||||
Sbjct: 1075 ctgatagtgtttggagttgtcctgcagcagccaccgataagcacagccccgtctttgcac 1016

                  
Query: 439  cactcg 444
            ||||||
Sbjct: 1015 cactcg 1010
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>ref|NM_113173.2| Arabidopsis thaliana HMT3; homocysteine S-methyltransferase AT3G22740
            (HMT3) mRNA, complete cds
          Length = 1384

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 376  gctctgatggtgtttggagttgtcc 400
            |||||||||||||||||||| ||||
Sbjct: 1082 gctctgatggtgtttggagtagtcc 1058
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>gb|AF297394.1| Arabidopsis thaliana homocysteine S-methyltransferase (HMT3) mRNA,
           complete cds
          Length = 1044

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 376 gctctgatggtgtttggagttgtcc 400
           |||||||||||||||||||| ||||
Sbjct: 983 gctctgatggtgtttggagtagtcc 959
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>emb|BX823839.1|CNS0A4YF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS81ZC09 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1305

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 376  gctctgatggtgtttggagttgtcc 400
            |||||||||||||||||||| ||||
Sbjct: 1072 gctctgatggtgtttggagtagtcc 1048
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>gb|BT005318.1| Arabidopsis thaliana At3g22740 mRNA, complete cds
          Length = 1044

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 376 gctctgatggtgtttggagttgtcc 400
           |||||||||||||||||||| ||||
Sbjct: 983 gctctgatggtgtttggagtagtcc 959
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>gb|AY087554.1| Arabidopsis thaliana clone 36591 mRNA, complete sequence
          Length = 1345

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 376  gctctgatggtgtttggagttgtcc 400
            |||||||||||||||||||| ||||
Sbjct: 1083 gctctgatggtgtttggagtagtcc 1059
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>dbj|AK118021.1| Arabidopsis thaliana At3g22740 mRNA for putative selenocysteine
            methyltransferase, complete cds, clone: RAFL19-23-M07
          Length = 1267

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 376  gctctgatggtgtttggagttgtcc 400
            |||||||||||||||||||| ||||
Sbjct: 1078 gctctgatggtgtttggagtagtcc 1054
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>dbj|AB022223.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MWI23
          Length = 77273

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 376   gctctgatggtgtttggagttgtcc 400
             |||||||||||||||||||| ||||
Sbjct: 22475 gctctgatggtgtttggagtagtcc 22499
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>gb|AC125279.1| Mus musculus BAC clone RP23-433F5 from 8, complete sequence
          Length = 201197

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   ctatctcattttgcaggaga 238
             ||||||||||||||||||||
Sbjct: 69139 ctatctcattttgcaggaga 69120
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>gb|AC122158.17| Mus musculus strain 129/Sv clone ct7-433o3 map 15, complete sequence
          Length = 135612

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   gcaaatgtaagtgcacagct 220
             ||||||||||||||||||||
Sbjct: 58588 gcaaatgtaagtgcacagct 58569
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>emb|AL078582.13|HSDJ130E4 Human DNA sequence from clone RP1-130E4 on chromosome 6q24.2-25.3
             Contains the 3' end of the ESR1 gene for estrogen receptor
             1, the 3' end of the synaptic nuclei expressed gene 1b
             (SYNE-1) (nesprin-1 beta, MYNE1, SYNE1, KIAA0796),
             complete sequence
          Length = 108893

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   gctgttactgcttgctatca 146
             ||||||||||||||||||||
Sbjct: 68009 gctgttactgcttgctatca 68028
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>gb|AC117463.5| Homo sapiens 3 BAC RP11-452B4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 78261

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   tacagcagctacatcttact 174
             ||||||||||||||||||||
Sbjct: 25810 tacagcagctacatcttact 25791
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>gb|AC107065.5| Bos taurus clone rp42-513g13, complete sequence
          Length = 175949

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   ctgttcgctagagacacacc 192
             ||||||||||||||||||||
Sbjct: 28466 ctgttcgctagagacacacc 28447
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>gb|AC156550.5| Mus musculus chromosome 15, clone RP23-353K7, complete sequence
          Length = 205302

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   gcaaatgtaagtgcacagct 220
             ||||||||||||||||||||
Sbjct: 23845 gcaaatgtaagtgcacagct 23864


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,248,148
Number of Sequences: 3902068
Number of extensions: 3248148
Number of successful extensions: 54961
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54921
Number of HSP's gapped (non-prelim): 40
length of query: 445
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 423
effective length of database: 17,147,199,772
effective search space: 7253265503556
effective search space used: 7253265503556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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