ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip ... 63 4e-10
2CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chiti... 60 4e-09
3CARB_SYNY3 (Q55756) Carbamoyl-phosphate synthase large chain (EC... 30 4.2
4KPRS_BACSU (P14193) Ribose-phosphate pyrophosphokinase (EC 2.7.6... 29 5.5
5CARB_ANASP (Q8YQL2) Carbamoyl-phosphate synthase large chain (EC... 28 9.4
6AKIB1_MOUSE (Q6ZPS6) Ankyrin repeat and IBR domain-containing pr... 28 9.4

>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb|
           chitinase-1) (TBC-1)
          Length = 314

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
 Frame = -3

Query: 472 TDVQTYVMFYDRQTGYYPGAKVLASLQTGKTTEELGLLSPDQGIAAAKELLR-QNKLPGF 296
           T V+ ++ +++ Q+  Y G KVL S     +T+  G L PD G   A  +L+ Q KL G 
Sbjct: 219 TSVEQFLKYFEEQSSNYHGGKVLVSF----STDSSGGLKPDNGFFRACSILKKQGKLHGI 274

Query: 295 FIWSADSSKQSDYKFTYETRAQEIVAN 215
           F+WSAD S  S+  F YE +AQ ++A+
Sbjct: 275 FVWSADDSLMSNNVFRYEMQAQSMLAS 301



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>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)|
          Length = 275

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
 Frame = -3

Query: 466 VQTYVMFYDRQTGYYPGAKVLASLQTGKTTEELGLLSPDQGIAAAKELLR-QNKLPGFFI 290
           V+ ++ +++ Q   YPG KVL S     +T+  G L P  G   A  +L+ Q KL G F+
Sbjct: 195 VEQFLKYFEMQRSNYPGGKVLVSF----STDNSGGLKPRNGFFDACSILKKQGKLHGIFV 250

Query: 289 WSADSSKQSDYKFTYETRAQEIVAN 215
           WSAD S  S+  F YE +AQ ++A+
Sbjct: 251 WSADDSLMSNDVFKYEMQAQSLLAS 275



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>CARB_SYNY3 (Q55756) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1081

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -3

Query: 454  VMFYDRQTGYYPGAKVLASLQTGKTTEELGLLSP--DQGIAAAKELLRQNKLPG 299
            V +  + TG  P AK+ + + +GKT EELG+      Q +A  + +L  +K PG
Sbjct: 858  VPYVSKATGR-PLAKIASLVMSGKTLEELGVTEEFIPQHVAVKEAVLPFSKFPG 910



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>KPRS_BACSU (P14193) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 317

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 448 FYDRQTGYYPGAKVLASLQTGKTTEELGLLSPDQ-GIAAAKELLRQNKLP 302
           F+D    +  G  +L     GK  E++ ++SPD  G+  A++L  + K P
Sbjct: 143 FFDIPIDHLMGVPILGEYFEGKNLEDIVIVSPDHGGVTRARKLADRLKAP 192



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>CARB_ANASP (Q8YQL2) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1104

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 454  VMFYDRQTGYYPGAKVLASLQTGKTTEELGLLSP--DQGIAAAKELLRQNKLPG 299
            V F  + TG  P AK+ + + +GKT EEL          IA  + +L  NK PG
Sbjct: 880  VPFVSKATGV-PLAKLASLIMSGKTLEELNFTQEVIPSHIAVKEAVLPFNKFPG 932



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>AKIB1_MOUSE (Q6ZPS6) Ankyrin repeat and IBR domain-containing protein 1|
           (Fragment)
          Length = 1087

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 239 GLIGELVVALLGAVRRPDEEPRQLVLPQQLLGRGDALVR 355
           G IG  + + L +V R  E PR  +   +LL  GD+L+R
Sbjct: 883 GAIGSSLPSRLDSVPRSTESPRAALSSSELLELGDSLMR 921


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,569,972
Number of Sequences: 219361
Number of extensions: 1041673
Number of successful extensions: 2859
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2858
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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