ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55d10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subun... 58 1e-08
2RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subun... 57 3e-08
3RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subun... 56 5e-08
4RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subun... 56 7e-08
5RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subun... 56 7e-08
6RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun... 56 7e-08
7RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subun... 56 7e-08
8RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subun... 56 7e-08
9RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subun... 55 9e-08
10RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subun... 55 9e-08
11RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subun... 55 2e-07
12RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subun... 52 8e-07
13RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subun... 44 2e-04
14GOGA6_HUMAN (Q9NYA3) Golgin subfamily A member 6 (Golgin linked ... 37 0.043
15PLS1_RAT (P58195) Phospholipid scramblase 1 (PL scramblase 1) (C... 32 0.81
16SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-a... 32 1.4
17HAIR_RAT (P97609) Protein hairless 31 1.8
18HAIR_MOUSE (Q61645) Protein hairless 31 1.8
19SF3A2_HUMAN (Q15428) Splicing factor 3A subunit 2 (Spliceosome-a... 30 3.1
20CISY_THIFE (P51045) Citrate synthase (EC 2.3.3.1) 30 4.0
21P200_MYCGE (Q49429) Protein P200 30 4.0
22CCD70_MACFA (Q4R9C9) Coiled-coil domain-containing protein 70 pr... 30 4.0
23SPT5H_CAEEL (Q21338) Transcription elongation factor SPT5 (DRB s... 30 5.3
24SWRC_BACSU (O31501) Swarming motility protein swrC 30 5.3
25AMY_CLOAB (P23671) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alp... 30 5.3
26EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline... 29 6.9
27T3RE_BACC1 (P25241) Type III restriction-modification system Bce... 29 6.9
28GLUP_STRGR (Q07006) Glutamyl endopeptidase 2 (EC 3.4.21.82) (Glu... 29 9.0
29CYB_EPISM (O48055) Cytochrome b 29 9.0
30CSPG5_CHICK (Q9DF69) Chondroitin sulfate proteoglycan 5 precurso... 29 9.0 
>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 29/93 (31%), Positives = 38/93 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1636 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1695

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKYD 512
            +P Y    PGY    P Y    P Y    P Y+
Sbjct: 1696 SPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYN 1728



 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 29/92 (31%), Positives = 37/92 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1622 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1681

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    PGY    P Y
Sbjct: 1682 SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1713



 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 28/80 (35%), Positives = 34/80 (42%)
 Frame = +3

Query: 270  PRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYR 449
            P Y+    GY   +P Y    P YS   PGY   SP+Y+  +PGY   +P Y    P Y 
Sbjct: 1543 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYS 1602

Query: 450  VPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y
Sbjct: 1603 PTSPSYSPTSPSYSPTSPSY 1622



 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 29/92 (31%), Positives = 37/92 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+    GY   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1566 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1625

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1626 SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1657



 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 30/96 (31%), Positives = 38/96 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1643 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1702

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKYDSVI 521
            +P Y    P Y    P YG   P Y     KY   I
Sbjct: 1703 SPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSI 1738



 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 28/87 (32%), Positives = 36/87 (41%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P ++   P Y+    GY   +P Y    P YS   PGY   SP+Y+  +P Y   +P Y 
Sbjct: 1550 PGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYS 1609

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    P Y
Sbjct: 1610 PTSPSYSPTSPSYSPTSPSYSPTSPSY 1636



 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1587 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1646

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1647 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1678



 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 29/92 (31%), Positives = 37/92 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+    GY   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1552 YSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT 1611

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1612 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1643



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 27/87 (31%), Positives = 34/87 (39%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   +P Y 
Sbjct: 1585 PGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1644

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    P Y
Sbjct: 1645 PTSPAYSPTSPAYSPTSPSYSPTSPSY 1671



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1629 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1688

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1689 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSY 1720



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1615 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1674

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1675 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1706



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 27/92 (29%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y   
Sbjct: 1594 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1653

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1654 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1685



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1573 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1632

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1633 SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY 1664



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 27/92 (29%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y   
Sbjct: 1601 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 1660

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 27/92 (29%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y   
Sbjct: 1608 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT 1667

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1699



 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 27/87 (31%), Positives = 35/87 (40%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P ++   P Y+    GY   +P Y    P YS   P Y  +SP Y+  +P Y   +P Y 
Sbjct: 1543 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYS 1602

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    P Y
Sbjct: 1603 PTSPSYSPTSPSYSPTSPSYSPTSPSY 1629



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1559 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1618

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1619 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY 1650



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 25/67 (37%), Positives = 29/67 (43%)
 Frame = +3

Query: 309  TPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMVVPGY 488
            +P Y    P YS   PGY   SP Y+  +PGY   +P Y    PGY    P Y    P Y
Sbjct: 1542 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1601

Query: 489  RVFIPKY 509
                P Y
Sbjct: 1602 SPTSPSY 1608



 Score = 37.7 bits (86), Expect = 0.019
 Identities = 24/97 (24%), Positives = 32/97 (32%), Gaps = 12/97 (12%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYT--------- 386
            Y+   P ++   P Y+    GY   +P Y    P Y    P Y+  S  Y+         
Sbjct: 1685 YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSIAYSPSN 1744

Query: 387  ---MPTPGYDMLAPIYDMVVPGYRVPIPIYGMVVPGY 488
                P   Y   +P Y    P Y    P Y    P Y
Sbjct: 1745 ARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTY 1781



 Score = 35.4 bits (80), Expect = 0.096
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 366  TASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            ++SP Y+  +PGY   +P Y    PGY    P Y    P Y    P Y
Sbjct: 1540 SSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1587



 Score = 34.3 bits (77), Expect = 0.21
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = +3

Query: 291  SGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYG 470
            S Y   +P Y    P YS   P Y  +SP+Y+  +P     +P Y         P   Y 
Sbjct: 1751 SPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYS--------PSAGYS 1802

Query: 471  MVVPGY 488
              +PGY
Sbjct: 1803 PTLPGY 1808



 Score = 31.6 bits (70), Expect = 1.4
 Identities = 20/62 (32%), Positives = 24/62 (38%)
 Frame = +3

Query: 270  PRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYR 449
            P Y+     Y   +P Y    P YS   P    ASP Y+ P+ GY    P Y     G  
Sbjct: 1758 PNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYS-PSAGYSPTLPGYSPSSTGQY 1816

Query: 450  VP 455
             P
Sbjct: 1817 TP 1818



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 276  YNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGY 446
            Y+     Y   +P Y    P YS   P Y  +SP  +  +P Y   A  Y   +PGY
Sbjct: 1753 YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAG-YSPTLPGY 1808
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>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1) (B220)
          Length = 1733

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 29/92 (31%), Positives = 37/92 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1626 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1685

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    PGY    P Y
Sbjct: 1686 SPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAY 1717



 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1598 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1657

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1658 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1689



 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1584 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1643

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1644 SPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSY 1675



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1605 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1664

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1665 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1696



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1591 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1650

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1651 SPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1682



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1577 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1636

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1637 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSY 1668



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1563 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1622

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1623 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1654



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1556 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1615

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1616 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1647



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1549 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1608

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1609 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1640



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1570 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1629

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1630 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1661



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 27/87 (31%), Positives = 34/87 (39%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   +P Y 
Sbjct: 1547 PTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1606

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    P Y
Sbjct: 1607 PTSPSYSPTSPSYSPTSPSYSPTSPSY 1633



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1619 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPT 1678

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1679 SPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGY 1710



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 27/92 (29%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y   
Sbjct: 1612 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPT 1671

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1672 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY 1703



 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 27/87 (31%), Positives = 33/87 (37%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P  +   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   +P Y 
Sbjct: 1540 PGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1599

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    P Y
Sbjct: 1600 PTSPSYSPTSPSYSPTSPSYSPTSPSY 1626



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 25/80 (31%), Positives = 32/80 (40%)
 Frame = +3

Query: 270  PRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYR 449
            P + +   G+   +P Y    P YS   P Y   SPSY+  +P Y   +P Y    P Y 
Sbjct: 1533 PGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1592

Query: 450  VPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y
Sbjct: 1593 PTSPSYSPTSPSYSPTSPSY 1612



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 26/87 (29%), Positives = 33/87 (37%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P   +  P ++     Y   +P Y    P YS   P Y   SPSY+  +P Y   +P Y 
Sbjct: 1533 PGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1592

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    P Y
Sbjct: 1593 PTSPSYSPTSPSYSPTSPSYSPTSPSY 1619



 Score = 42.4 bits (98), Expect = 8e-04
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +3

Query: 309  TPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMVVPGY 488
            +P + +  P +S   P Y   SP+Y+  +P Y   +P Y    P Y    P Y    P Y
Sbjct: 1532 SPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1591

Query: 489  RVFIPKY 509
                P Y
Sbjct: 1592 SPTSPSY 1598



 Score = 35.8 bits (81), Expect = 0.074
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYT 386
            Y+   P ++   P Y+     Y   +P Y    P YS   PGY   SP+Y+
Sbjct: 1668 YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYS 1718



 Score = 33.1 bits (74), Expect = 0.48
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = +3

Query: 357  GYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            G    SP + + +PG+   +P Y    P Y    P Y    P Y    P Y
Sbjct: 1527 GEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1577
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>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1752

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1606 YSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1665

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1666 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1697



 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1592 YSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1651

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1652 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1683



 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1585 YSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1644

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1645 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1676



 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1599 YSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1658

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1659 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690



 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1578 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1637

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1638 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1669



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1655 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1714

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1715 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1746



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1648 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1707

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1708 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1739



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1641 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1700

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1701 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1732



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1634 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1693

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1694 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1725



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1627 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1686

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1687 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1718



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1620 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1679

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1680 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1711



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1613 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1672

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1673 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1704



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 27/87 (31%), Positives = 34/87 (39%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   +P Y 
Sbjct: 1576 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYS 1635

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    P Y
Sbjct: 1636 PTSPSYSPTSPSYSPTSPSYSPTSPSY 1662



 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 27/87 (31%), Positives = 33/87 (37%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P +    P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   +P Y 
Sbjct: 1569 PAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYS 1628

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    P Y
Sbjct: 1629 PTSPSYSPTSPSYSPTSPSYSPTSPSY 1655



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 28/87 (32%), Positives = 35/87 (40%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P + +  P Y+    GY   +P Y    P YS   P Y   SPSY+  +P Y   +P Y 
Sbjct: 1549 PGYGLTSPSYSPSSPGYS-TSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1607

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    P Y
Sbjct: 1608 ATSPSYSPTSPSYSPTSPSYSPTSPSY 1634



 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 25/83 (30%), Positives = 33/83 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1669 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1728

Query: 414  APIYDMVVPGYRVPIPIYGMVVP 482
            +P Y    P Y    P Y    P
Sbjct: 1729 SPSYSPTSPSYSPTSPSYSPTSP 1751



 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 24/68 (35%), Positives = 30/68 (44%)
 Frame = +3

Query: 306  VTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMVVPG 485
            ++P Y +  P YS   PGY T SP+Y   +P Y   +P Y    P Y    P Y    P 
Sbjct: 1547 MSPGYGLTSPSYSPSSPGYST-SPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1605

Query: 486  YRVFIPKY 509
            Y    P Y
Sbjct: 1606 YSATSPSY 1613



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 22/59 (37%), Positives = 26/59 (44%)
 Frame = +3

Query: 333  P*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            P  S + PGY   SPSY+  +PGY   +P Y    P Y    P Y    P Y    P Y
Sbjct: 1542 PFSSAMSPGYGLTSPSYSPSSPGYS-TSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSY 1599



 Score = 32.7 bits (73), Expect = 0.62
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = +3

Query: 333  P*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            P   +  PGY   SP  +  +PGY + +P Y    PGY    P Y    P Y    P Y
Sbjct: 1530 PYKGVQSPGY--TSPFSSAMSPGYGLTSPSYSPSSPGYSTS-PAYMPSSPSYSPTSPSY 1585



 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPS 380
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPS
Sbjct: 1704 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1752
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>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1745

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 28/92 (30%), Positives = 37/92 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1629 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1688

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P+Y
Sbjct: 1689 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQY 1720



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1622 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1681

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1682 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1713



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1615 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1674

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1675 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1706



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1608 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1667

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1699



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1601 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1660

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1594 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1653

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1654 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1685



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1587 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1646

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1647 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1678



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1580 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1639

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1640 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1671



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1573 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1632

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1633 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1664



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1566 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1625

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1626 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1657



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1559 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1618

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1619 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1650



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1552 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1611

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1612 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1643



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 27/87 (31%), Positives = 34/87 (39%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   +P Y 
Sbjct: 1550 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1609

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    P Y
Sbjct: 1610 PTSPSYSPTSPSYSPTSPSYSPTSPSY 1636



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1636 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1695

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1696 SPSYSPTSPSYSPTSPSYSPTSPQYSPRSPSY 1727



 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 27/87 (31%), Positives = 33/87 (37%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P  +   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   +P Y 
Sbjct: 1543 PGFSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1602

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    P Y
Sbjct: 1603 PTSPSYSPTSPSYSPTSPSYSPTSPSY 1629



 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 23/70 (32%), Positives = 29/70 (41%)
 Frame = +3

Query: 300  DIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMVV 479
            D+ +P +    P YS   P Y   SPSY+  +P Y   +P Y    P Y    P Y    
Sbjct: 1539 DVSSPGFSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1598

Query: 480  PGYRVFIPKY 509
            P Y    P Y
Sbjct: 1599 PSYSPTSPSY 1608



 Score = 33.1 bits (74), Expect = 0.48
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYT 386
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+
Sbjct: 1678 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPRSPSYS 1728
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>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1852

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 29/94 (30%), Positives = 39/94 (41%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y  +SPSY+  +P Y   
Sbjct: 1619 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPT 1678

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKYDS 515
            +P Y    P Y    P Y    P Y    P Y+S
Sbjct: 1679 SPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYES 1712



 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 28/92 (30%), Positives = 37/92 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y  +SPSY+  +P Y   
Sbjct: 1612 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPS 1671

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1672 SPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTY 1703



 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIV--VSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYD 407
            ++   P ++   P Y+     +G   V+P Y    P YS   P Y   SPSY+  +P Y 
Sbjct: 1582 FSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1641

Query: 408  MLAPIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
              +P Y    P Y    P Y    P Y    P+Y
Sbjct: 1642 PTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRY 1675



 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 28/89 (31%), Positives = 35/89 (39%)
 Frame = +3

Query: 243  VVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPI 422
            V P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   +P 
Sbjct: 1608 VSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPS 1667

Query: 423  YDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            Y    P Y    P Y    P Y    P Y
Sbjct: 1668 YSPSSPRYSPTSPTYSPTSPTYSPTSPTY 1696



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEP------GYHTASPSYTMPTPGYDM 410
            PR++   P Y+     Y   +P Y    P YS   P      GY  +SP Y+  +P Y  
Sbjct: 1673 PRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSP 1732

Query: 411  LAPIYDMVVPGYRVPIPIYGMVVPGYRVFIPKYD 512
             +P Y    P Y    P Y    P Y    P Y+
Sbjct: 1733 TSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYN 1766



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSY--TMP----TPGYDM 410
            P+++   P Y+     Y   +P+Y    P YS   P Y  +SP+Y  T P    +P Y  
Sbjct: 1721 PKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSP 1780

Query: 411  LAPIYDMVVPGYRVPIPIYGMVVPGY 488
             +P Y    P Y    P Y    P Y
Sbjct: 1781 TSPTYSPTSPSYTPSSPQYSPTSPTY 1806



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
 Frame = +3

Query: 270  PRYNIVVSG-YDIVTPRYDMVHP*YSIVEPGY---------HTASPSYTMPTPGYDMLAP 419
            P Y  +  G Y   +P++ M  P YS   P Y            SPSY+  +P Y   +P
Sbjct: 1565 PSYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSP 1624

Query: 420  IYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
             Y    P Y    P Y    P Y    P Y
Sbjct: 1625 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1654



 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y     GY   +P+Y    P YS   P Y   SP Y+  +P Y   
Sbjct: 1696 YSPTSPTYSPTSPSYESG-GGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPS 1754

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y  P    G   P Y    P Y
Sbjct: 1755 SPTYTPSSPTYN-PTSPRGFSSPQYSPTSPTY 1785



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 30/107 (28%), Positives = 38/107 (35%), Gaps = 14/107 (13%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P+++   P Y      Y+  +PR     P YS   P Y   SPSYT  +P Y   
Sbjct: 1744 YSPTSPQYSPSSPTYTPSSPTYNPTSPR-GFSSPQYSPTSPTYSPTSPSYTPSSPQYSPT 1802

Query: 414  APIY--------------DMVVPGYRVPIPIYGMVVPGYRVFIPKYD 512
            +P Y                  P Y    P Y    P Y    P YD
Sbjct: 1803 SPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYSPASPSYSPSSPTYD 1849



 Score = 35.4 bits (80), Expect = 0.096
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 14/82 (17%)
 Frame = +3

Query: 225  TS*YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*Y--------------SIVEPGY 362
            TS   F  P+++   P Y+     Y   +P+Y    P Y              S   P Y
Sbjct: 1768 TSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTY 1827

Query: 363  HTASPSYTMPTPGYDMLAPIYD 428
              +SP+Y+  +P Y   +P YD
Sbjct: 1828 SPSSPTYSPASPSYSPSSPTYD 1849
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>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1629 YSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1688

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1689 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1720



 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1622 YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1681

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1682 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1713



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+YT  +P Y   
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1766 SPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSY 1797



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1664 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1723

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1724 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNY 1755



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1657 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1716

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1717 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1748



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1650 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1709

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1710 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1741



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1643 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1702

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1703 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1734



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1636 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1695

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1696 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1727



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1615 YSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1674

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1675 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1706



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1685 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1744

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1745 SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNY 1776



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1671 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1730

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSY 1762



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 27/87 (31%), Positives = 34/87 (39%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   +P Y 
Sbjct: 1613 PSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1672

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    P Y
Sbjct: 1673 PTSPSYSPTSPSYSPTSPSYSPTSPSY 1699



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 27/92 (29%), Positives = 37/92 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P Y+   P Y   SPSY+  +P Y   
Sbjct: 1720 YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPT 1779

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P+Y
Sbjct: 1780 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1811



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1692 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPT 1751

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1752 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNY 1783



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 29/92 (31%), Positives = 38/92 (41%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P++    P Y+     Y   +P+Y    P YS   P Y   SP+Y+  TP Y   
Sbjct: 1832 YSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPT 1891

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    PKY
Sbjct: 1892 SPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1713 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPT 1772

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1773 SPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 1804



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1678 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1737

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSY 1769



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 29/92 (31%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P +    P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1748 YSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPS 1807

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    PKY
Sbjct: 1808 SPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839



 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+YT  +P Y   
Sbjct: 1727 YSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPT 1786

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1787 SPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTY 1818



 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 29/92 (31%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P +    P Y+     Y   +P Y    P YS   P Y   SP+YT  +P Y   
Sbjct: 1769 YSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPS 1828

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    PKY
Sbjct: 1829 SPSYSPTSPKYTPTSPSYSPSSPEYTPASPKY 1860



 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 27/92 (29%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y   
Sbjct: 1699 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPT 1758

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1759 SPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSY 1790



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 29/92 (31%), Positives = 39/92 (42%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +PRY    P Y+   P Y  +SPSY+  +P Y   
Sbjct: 1783 YSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPT 1842

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    PKY
Sbjct: 1843 SPSYSPSSPEYTPASPKYSPTSPKYSPTSPKY 1874



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y      Y   +P Y    P YS   P Y  +SP YT  +P Y   
Sbjct: 1762 YSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPS 1821

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P+Y
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEY 1853



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 28/92 (30%), Positives = 35/92 (38%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y    P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1755 YTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQ 1814

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1815 SPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 1846



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 27/92 (29%), Positives = 35/92 (38%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y      Y   +P Y    P Y+   P Y   SPSY+  +P Y   
Sbjct: 1741 YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT 1800

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1801 SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSY 1832



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 27/87 (31%), Positives = 33/87 (37%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            PR+    P Y      Y   +P Y    P Y+   P Y  +SP YT  +P Y   +P Y 
Sbjct: 1809 PRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYS 1868

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    P Y
Sbjct: 1869 PTSPKYSPTSPTYSPTTPKYSPTSPTY 1895



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 28/92 (30%), Positives = 37/92 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y    P ++   P Y+     Y   +P Y    P Y+   P Y  +SPSY+  +P Y   
Sbjct: 1776 YTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPT 1835

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    PKY
Sbjct: 1836 SPKYTPTSPSYSPSSPEYTPASPKYSPTSPKY 1867



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 27/92 (29%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y   
Sbjct: 1734 YSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPT 1793

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1794 SPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSY 1825



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 30/92 (32%), Positives = 37/92 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   PRY      Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1797 YSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPA 1856

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    PKY
Sbjct: 1857 SPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY 1888



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 26/92 (28%), Positives = 35/92 (38%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y    P ++   P Y      Y   +P+Y    P YS   P Y   +P Y+  +P Y   
Sbjct: 1839 YTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPT 1898

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P+Y    P Y    P Y    P Y    P Y
Sbjct: 1899 SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTY 1930



 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 26/87 (29%), Positives = 33/87 (37%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P ++   P+Y      Y   +P Y    P YS   P Y   SP Y+  +P Y    P Y 
Sbjct: 1830 PSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYS 1889

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P+Y    P Y    P Y
Sbjct: 1890 PTSPTYSPTSPVYTPTSPKYSPTSPTY 1916



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 26/90 (28%), Positives = 35/90 (38%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y    P+++   P+Y+     Y   +P Y    P YS   P Y   SP YT  +P Y   
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIP 503
            +P Y    P Y    P Y    P    + P
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSP 1942



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 26/86 (30%), Positives = 35/86 (40%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P +    P+Y+     Y   +P+Y    P YS   P Y   SP+Y+  +P Y   +P Y 
Sbjct: 1851 PEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYS 1910

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPK 506
               P Y    P Y    P Y    PK
Sbjct: 1911 PTSPTYSPTSPKYSPTSPTYSPTSPK 1936



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 26/87 (29%), Positives = 34/87 (39%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P ++   P Y+     Y   +P Y    P Y+   P Y   SP Y+  +P Y   +P Y 
Sbjct: 1823 PSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYS 1882

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    PKY
Sbjct: 1883 PTTPKYSPTSPTYSPTSPVYTPTSPKY 1909



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 24/72 (33%), Positives = 29/72 (40%)
 Frame = +3

Query: 294  GYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGM 473
            GY   +P Y    P YS   P Y   SP+Y+  +P Y   +P Y    P Y    P Y  
Sbjct: 1607 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1666

Query: 474  VVPGYRVFIPKY 509
              P Y    P Y
Sbjct: 1667 TSPSYSPTSPSY 1678



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 27/87 (31%), Positives = 34/87 (39%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P +    P Y+     Y   +P+Y    P YS   P Y  ASP Y+  +P Y   +P Y 
Sbjct: 1816 PTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYS 1875

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    P Y
Sbjct: 1876 PTSPTYSPTTPKYSPTSPTYSPTSPVY 1902



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 28/92 (30%), Positives = 35/92 (38%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP YT  +P Y   
Sbjct: 1790 YSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPS 1849

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1850 SPEYTPASPKYSPTSPKYSPTSPKYSPTSPTY 1881



 Score = 36.6 bits (83), Expect = 0.043
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P +    P+Y+     Y   +P+Y    P YS   P   T SP+    +PGY   
Sbjct: 1895 YSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPT----SPGYSPT 1950

Query: 414  APIYDMVVP 440
            +P Y +  P
Sbjct: 1951 SPTYSLTSP 1959



 Score = 34.3 bits (77), Expect = 0.21
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +3

Query: 348  VEPGYHTASPSYTMPTP-GYDMLAPIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            + P Y   SP+Y   +P GY   +P Y    P Y    P Y    P Y    P Y
Sbjct: 1589 MSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY 1643
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>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1629 YSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1688

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1689 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1720



 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1622 YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1681

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1682 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1713



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+YT  +P Y   
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1766 SPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSY 1797



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1664 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1723

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1724 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNY 1755



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1657 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1716

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1717 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1748



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1650 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1709

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1710 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1741



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1643 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1702

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1703 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1734



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1636 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1695

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1696 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1727



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1615 YSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1674

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1675 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1706



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1685 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1744

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1745 SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNY 1776



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1671 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1730

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSY 1762



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 27/87 (31%), Positives = 34/87 (39%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   +P Y 
Sbjct: 1613 PSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1672

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    P Y
Sbjct: 1673 PTSPSYSPTSPSYSPTSPSYSPTSPSY 1699



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 27/92 (29%), Positives = 37/92 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P Y+   P Y   SPSY+  +P Y   
Sbjct: 1720 YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPT 1779

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P+Y
Sbjct: 1780 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1811



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1692 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPT 1751

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1752 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNY 1783



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 29/92 (31%), Positives = 38/92 (41%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P++    P Y+     Y   +P+Y    P YS   P Y   SP+Y+  TP Y   
Sbjct: 1832 YSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPT 1891

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    PKY
Sbjct: 1892 SPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1713 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPT 1772

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1773 SPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 1804



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1678 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1737

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSY 1769



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 29/92 (31%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P +    P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1748 YSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPS 1807

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    PKY
Sbjct: 1808 SPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839



 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+YT  +P Y   
Sbjct: 1727 YSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPT 1786

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1787 SPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTY 1818



 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 29/92 (31%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P +    P Y+     Y   +P Y    P YS   P Y   SP+YT  +P Y   
Sbjct: 1769 YSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPS 1828

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    PKY
Sbjct: 1829 SPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY 1860



 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 27/92 (29%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y   
Sbjct: 1699 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPT 1758

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1759 SPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSY 1790



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 29/92 (31%), Positives = 39/92 (42%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +PRY    P Y+   P Y  +SPSY+  +P Y   
Sbjct: 1783 YSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPT 1842

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    PKY
Sbjct: 1843 SPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKY 1874



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y      Y   +P Y    P YS   P Y  +SP YT  +P Y   
Sbjct: 1762 YSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPS 1821

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P+Y
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEY 1853



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 28/92 (30%), Positives = 35/92 (38%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y    P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1755 YTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQ 1814

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1815 SPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 1846



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 27/92 (29%), Positives = 35/92 (38%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y      Y   +P Y    P Y+   P Y   SPSY+  +P Y   
Sbjct: 1741 YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT 1800

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1801 SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSY 1832



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 27/87 (31%), Positives = 33/87 (37%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            PR+    P Y      Y   +P Y    P Y+   P Y  +SP YT  +P Y   +P Y 
Sbjct: 1809 PRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYS 1868

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    P Y
Sbjct: 1869 PTSPKYSPTSPTYSPTTPKYSPTSPTY 1895



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 28/92 (30%), Positives = 37/92 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y    P ++   P Y+     Y   +P Y    P Y+   P Y  +SPSY+  +P Y   
Sbjct: 1776 YTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPT 1835

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    PKY
Sbjct: 1836 SPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKY 1867



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 27/92 (29%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y   
Sbjct: 1734 YSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPT 1793

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1794 SPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSY 1825



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 30/92 (32%), Positives = 37/92 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   PRY      Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1797 YSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPT 1856

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    PKY
Sbjct: 1857 SPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY 1888



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 26/92 (28%), Positives = 35/92 (38%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y    P ++   P Y      Y   +P+Y    P YS   P Y   +P Y+  +P Y   
Sbjct: 1839 YTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPT 1898

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P+Y    P Y    P Y    P Y    P Y
Sbjct: 1899 SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTY 1930



 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 26/87 (29%), Positives = 33/87 (37%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P ++   P+Y      Y   +P Y    P YS   P Y   SP Y+  +P Y    P Y 
Sbjct: 1830 PSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYS 1889

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P+Y    P Y    P Y
Sbjct: 1890 PTSPTYSPTSPVYTPTSPKYSPTSPTY 1916



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 26/90 (28%), Positives = 35/90 (38%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y    P+++   P+Y+     Y   +P Y    P YS   P Y   SP YT  +P Y   
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIP 503
            +P Y    P Y    P Y    P    + P
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSP 1942



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 26/86 (30%), Positives = 35/86 (40%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P +    P+Y+     Y   +P+Y    P YS   P Y   SP+Y+  +P Y   +P Y 
Sbjct: 1851 PEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYS 1910

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPK 506
               P Y    P Y    P Y    PK
Sbjct: 1911 PTSPTYSPTSPKYSPTSPTYSPTSPK 1936



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 26/87 (29%), Positives = 34/87 (39%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P ++   P Y+     Y   +P Y    P Y+   P Y   SP Y+  +P Y   +P Y 
Sbjct: 1823 PSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYS 1882

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    PKY
Sbjct: 1883 PTTPKYSPTSPTYSPTSPVYTPTSPKY 1909



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 24/72 (33%), Positives = 29/72 (40%)
 Frame = +3

Query: 294  GYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGM 473
            GY   +P Y    P YS   P Y   SP+Y+  +P Y   +P Y    P Y    P Y  
Sbjct: 1607 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1666

Query: 474  VVPGYRVFIPKY 509
              P Y    P Y
Sbjct: 1667 TSPSYSPTSPSY 1678



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 28/92 (30%), Positives = 35/92 (38%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP YT  +P Y   
Sbjct: 1790 YSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPS 1849

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1850 SPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTY 1881



 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 26/87 (29%), Positives = 33/87 (37%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P +    P Y+     Y   +P+Y    P YS   P Y   SP Y+  +P Y   +P Y 
Sbjct: 1816 PTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYS 1875

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    P Y
Sbjct: 1876 PTSPTYSPTTPKYSPTSPTYSPTSPVY 1902



 Score = 36.6 bits (83), Expect = 0.043
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P +    P+Y+     Y   +P+Y    P YS   P   T SP+    +PGY   
Sbjct: 1895 YSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPT----SPGYSPT 1950

Query: 414  APIYDMVVP 440
            +P Y +  P
Sbjct: 1951 SPTYSLTSP 1959



 Score = 34.3 bits (77), Expect = 0.21
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +3

Query: 348  VEPGYHTASPSYTMPTP-GYDMLAPIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            + P Y   SP+Y   +P GY   +P Y    P Y    P Y    P Y    P Y
Sbjct: 1589 MSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY 1643
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>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1) (Fragment)
          Length = 467

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 126 YSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 185

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 186 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 217



 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 119 YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 178

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 179 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 210



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+YT  +P Y   
Sbjct: 203 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 262

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 263 SPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSY 294



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 161 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 220

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 221 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNY 252



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 154 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 213

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 214 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 245



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 147 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 206

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 207 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 238



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 140 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 199

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 200 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 231



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 133 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 192

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 193 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 224



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 112 YSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 171

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 172 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 203



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 182 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 241

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 242 SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNY 273



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 168 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 227

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 228 SPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSY 259



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 27/87 (31%), Positives = 34/87 (39%)
 Frame = +3

Query: 249 PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
           P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   +P Y 
Sbjct: 110 PSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 169

Query: 429 MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
              P Y    P Y    P Y    P Y
Sbjct: 170 PTSPSYSPTSPSYSPTSPSYSPTSPSY 196



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 27/92 (29%), Positives = 37/92 (40%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P Y+   P Y   SPSY+  +P Y   
Sbjct: 217 YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPT 276

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P+Y
Sbjct: 277 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 308



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 189 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPT 248

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 249 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNY 280



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 29/92 (31%), Positives = 38/92 (41%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P++    P Y+     Y   +P+Y    P YS   P Y   SP+Y+  TP Y   
Sbjct: 329 YSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPT 388

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    PKY
Sbjct: 389 SPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 420



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 210 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPT 269

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 270 SPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 301



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 175 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 234

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 235 SPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSY 266



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 29/92 (31%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P +    P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 245 YSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPS 304

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    PKY
Sbjct: 305 SPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 336



 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+YT  +P Y   
Sbjct: 224 YSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPT 283

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 284 SPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTY 315



 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 29/92 (31%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P +    P Y+     Y   +P Y    P YS   P Y   SP+YT  +P Y   
Sbjct: 266 YSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPS 325

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    PKY
Sbjct: 326 SPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY 357



 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 27/92 (29%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y   
Sbjct: 196 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPT 255

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 256 SPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSY 287



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 29/92 (31%), Positives = 39/92 (42%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +PRY    P Y+   P Y  +SPSY+  +P Y   
Sbjct: 280 YSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPT 339

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    PKY
Sbjct: 340 SPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKY 371



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y      Y   +P Y    P YS   P Y  +SP YT  +P Y   
Sbjct: 259 YSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPS 318

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P+Y
Sbjct: 319 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEY 350



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 28/92 (30%), Positives = 35/92 (38%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y    P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 252 YTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQ 311

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 312 SPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 343



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 27/92 (29%), Positives = 35/92 (38%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y      Y   +P Y    P Y+   P Y   SPSY+  +P Y   
Sbjct: 238 YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT 297

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 298 SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSY 329



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 27/87 (31%), Positives = 33/87 (37%)
 Frame = +3

Query: 249 PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
           PR+    P Y      Y   +P Y    P Y+   P Y  +SP YT  +P Y   +P Y 
Sbjct: 306 PRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYS 365

Query: 429 MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
              P Y    P Y    P Y    P Y
Sbjct: 366 PTSPKYSPTSPTYSPTTPKYSPTSPTY 392



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 28/92 (30%), Positives = 37/92 (40%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y    P ++   P Y+     Y   +P Y    P Y+   P Y  +SPSY+  +P Y   
Sbjct: 273 YTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPT 332

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    PKY
Sbjct: 333 SPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKY 364



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 27/92 (29%), Positives = 36/92 (39%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y   
Sbjct: 231 YSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPT 290

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 291 SPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSY 322



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 30/92 (32%), Positives = 37/92 (40%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   PRY      Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 294 YSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPT 353

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    PKY
Sbjct: 354 SPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY 385



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 26/92 (28%), Positives = 35/92 (38%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y    P ++   P Y      Y   +P+Y    P YS   P Y   +P Y+  +P Y   
Sbjct: 336 YTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPT 395

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P+Y    P Y    P Y    P Y    P Y
Sbjct: 396 SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTY 427



 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 26/87 (29%), Positives = 33/87 (37%)
 Frame = +3

Query: 249 PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
           P ++   P+Y      Y   +P Y    P YS   P Y   SP Y+  +P Y    P Y 
Sbjct: 327 PSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYS 386

Query: 429 MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
              P Y    P+Y    P Y    P Y
Sbjct: 387 PTSPTYSPTSPVYTPTSPKYSPTSPTY 413



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 26/90 (28%), Positives = 35/90 (38%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y    P+++   P+Y+     Y   +P Y    P YS   P Y   SP YT  +P Y   
Sbjct: 350 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 409

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIP 503
           +P Y    P Y    P Y    P    + P
Sbjct: 410 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSP 439



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 26/86 (30%), Positives = 35/86 (40%)
 Frame = +3

Query: 249 PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
           P +    P+Y+     Y   +P+Y    P YS   P Y   SP+Y+  +P Y   +P Y 
Sbjct: 348 PEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYS 407

Query: 429 MVVPGYRVPIPIYGMVVPGYRVFIPK 506
              P Y    P Y    P Y    PK
Sbjct: 408 PTSPTYSPTSPKYSPTSPTYSPTSPK 433



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 26/87 (29%), Positives = 34/87 (39%)
 Frame = +3

Query: 249 PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
           P ++   P Y+     Y   +P Y    P Y+   P Y   SP Y+  +P Y   +P Y 
Sbjct: 320 PSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYS 379

Query: 429 MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
              P Y    P Y    P Y    PKY
Sbjct: 380 PTTPKYSPTSPTYSPTSPVYTPTSPKY 406



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 24/72 (33%), Positives = 29/72 (40%)
 Frame = +3

Query: 294 GYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGM 473
           GY   +P Y    P YS   P Y   SP+Y+  +P Y   +P Y    P Y    P Y  
Sbjct: 104 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 163

Query: 474 VVPGYRVFIPKY 509
             P Y    P Y
Sbjct: 164 TSPSYSPTSPSY 175



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 28/92 (30%), Positives = 35/92 (38%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP YT  +P Y   
Sbjct: 287 YSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPS 346

Query: 414 APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           +P Y    P Y    P Y    P Y    P Y
Sbjct: 347 SPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTY 378



 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 26/87 (29%), Positives = 33/87 (37%)
 Frame = +3

Query: 249 PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
           P +    P Y+     Y   +P+Y    P YS   P Y   SP Y+  +P Y   +P Y 
Sbjct: 313 PTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYS 372

Query: 429 MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
              P Y    P Y    P Y    P Y
Sbjct: 373 PTSPTYSPTTPKYSPTSPTYSPTSPVY 399



 Score = 36.6 bits (83), Expect = 0.043
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
           Y+   P +    P+Y+     Y   +P+Y    P YS   P   T SP+    +PGY   
Sbjct: 392 YSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPT----SPGYSPT 447

Query: 414 APIYDMVVP 440
           +P Y +  P
Sbjct: 448 SPTYSLTSP 456



 Score = 34.3 bits (77), Expect = 0.21
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +3

Query: 348 VEPGYHTASPSYTMPTP-GYDMLAPIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           + P Y   SP+Y   +P GY   +P Y    P Y    P Y    P Y    P Y
Sbjct: 86  MSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY 140
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>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1599

 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1480 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1539

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1540 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1571



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1473 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1532

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1533 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1564



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 27/94 (28%), Positives = 38/94 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1487 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1546

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKYDS 515
            +P Y    P Y    P Y    P Y V +  + +
Sbjct: 1547 SPSYSPTSPSYSPTSPSYSPTSPSYSVSMSSFSN 1580



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 27/87 (31%), Positives = 34/87 (39%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   +P Y 
Sbjct: 1471 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1530

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               P Y    P Y    P Y    P Y
Sbjct: 1531 PTSPSYSPTSPSYSPTSPSYSPTSPSY 1557



 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 23/67 (34%), Positives = 27/67 (40%)
 Frame = +3

Query: 309  TPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMVVPGY 488
            +P Y    P YS   P Y   SPSY+  +P Y   +P Y    P Y    P Y    P Y
Sbjct: 1470 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1529

Query: 489  RVFIPKY 509
                P Y
Sbjct: 1530 SPTSPSY 1536



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 22/65 (33%), Positives = 25/65 (38%)
 Frame = +3

Query: 315  RYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMVVPGYRV 494
            R     P YS   P Y   SPSY+  +P Y   +P Y    P Y    P Y    P Y  
Sbjct: 1465 RLSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1524

Query: 495  FIPKY 509
              P Y
Sbjct: 1525 TSPSY 1529
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>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (Fragment)
          Length = 902

 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 777  YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 836

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 837  SPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSY 868



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 742  YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPT 801

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 802  SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 833



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 791  YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 850

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 851  SPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSY 882



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 784  YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 843

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 844  SPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSY 875



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 770  YSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 829

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 830  SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 861



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 763  YSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 822

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 823  SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 854



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 749  YSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 808

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 809  SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 840



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 756  YSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 815

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 816  SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 847



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 735  YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPT 794

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 795  SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 826



 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 27/87 (31%), Positives = 34/87 (39%)
 Frame = +3

Query: 249 PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
           P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   +P Y 
Sbjct: 726 PTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYS 785

Query: 429 MVVPGYRVPIPIYGMVVPGYRVFIPKY 509
              P Y    P Y    P Y    P Y
Sbjct: 786 PTSPSYSPTSPSYSPTSPSYSPTSPSY 812



 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 27/92 (29%), Positives = 35/92 (38%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP Y+  +P Y   
Sbjct: 728  YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPT 787

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 788  SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 819



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 27/92 (29%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 798  YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 857

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P +
Sbjct: 858  SPSYSPSSPSYSPSSPSYSPSSPSYSPSSPTF 889



 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 23/67 (34%), Positives = 27/67 (40%)
 Frame = +3

Query: 309 TPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMVVPGY 488
           +P Y    P YS   P Y   SPSY+  +P Y   +P Y    P Y    P Y    P Y
Sbjct: 725 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSY 784

Query: 489 RVFIPKY 509
               P Y
Sbjct: 785 SPTSPSY 791



 Score = 35.0 bits (79), Expect = 0.13
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +3

Query: 360 YHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           Y   SP+Y+  +P Y   +P Y    P Y    P Y    P Y    P Y
Sbjct: 721 YFPQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 770



 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYT 386
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y  +SP++T
Sbjct: 840 YSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPTFT 890



 Score = 29.6 bits (65), Expect = 5.3
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
 Frame = +3

Query: 354 PGYHT-----ASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           PGY+      +S  Y   +P Y   +P Y    P Y    P Y    P Y    P Y
Sbjct: 707 PGYNANKSYGSSYQYFPQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 763
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>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1853

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 28/93 (30%), Positives = 37/93 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1623 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPT 1682

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKYD 512
            +P Y    P Y    P Y    P Y    P Y+
Sbjct: 1683 SPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYE 1715



 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1616 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 1675

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1676 SPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTY 1707



 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 28/89 (31%), Positives = 35/89 (39%)
 Frame = +3

Query: 243  VVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPI 422
            V P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y   +P 
Sbjct: 1612 VSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1671

Query: 423  YDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            Y    P Y    P Y    P Y    P Y
Sbjct: 1672 YSPSSPRYSPTSPTYSPTSPTYSPTSPTY 1700



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 26/90 (28%), Positives = 36/90 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y  +SP Y+  +P Y   
Sbjct: 1630 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPT 1689

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIP 503
            +P Y    P Y    P Y    P Y  + P
Sbjct: 1690 SPTYSPTSPTYSPTSPTYSPTSPSYEGYSP 1719



 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVS---GYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            ++   P ++   P Y+       G   V+P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1585 FSMTSPHYSPTSPSYSPTSPAHHGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1644

Query: 405  DMLAPIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               +P Y    P Y    P Y    P Y    P+Y
Sbjct: 1645 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1679



 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 29/92 (31%), Positives = 35/92 (38%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P H+   P    V   Y   +P Y    P YS   P Y   SPSY+  +P Y   
Sbjct: 1599 YSPTSPAHHGQSP----VSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1654

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y    P Y    P Y
Sbjct: 1655 SPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTY 1686



 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEP---GYHTASPSYTMPTPGYDMLAP 419
            PR++   P Y+     Y   +P Y    P YS   P   GY  +SP Y+  +P Y   +P
Sbjct: 1677 PRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSP 1736

Query: 420  IYDMVVPGYRVPIPIYGMVVPGYRVFIPKYD 512
             Y    P Y    P Y    P Y    P Y+
Sbjct: 1737 SYSPTSPQYSPTSPQYSPSSPTYTPSSPTYN 1767



 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 28/92 (30%), Positives = 37/92 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y   
Sbjct: 1637 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPT 1696

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y    P Y     GY    PKY
Sbjct: 1697 SPTYSPTSPTYSPTSPSY----EGYSPSSPKY 1724



 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPS---YTMPTPGY 404
            Y+   P ++   PRY+     Y   +P Y    P YS   P Y   SPS   Y+  +P Y
Sbjct: 1665 YSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKY 1724

Query: 405  DMLAPIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
               +P Y    P Y    P Y    P Y    P Y
Sbjct: 1725 SPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTY 1759



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSY--TMP----TPGYDM 410
            P+++   P Y+     Y   +P+Y    P YS   P Y  +SP+Y  T P    +P Y  
Sbjct: 1722 PKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRAFSSPQYSP 1781

Query: 411  LAPIYDMVVPGYRVPIPIYGMVVPGY 488
             +P Y    P Y    P Y    P Y
Sbjct: 1782 TSPTYSPTSPSYTPSSPQYSPTSPTY 1807



 Score = 42.4 bits (98), Expect = 8e-04
 Identities = 28/98 (28%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y     GY   +P+Y    P YS   P Y   SP Y+  +P Y   
Sbjct: 1700 YSPTSPTYSPTSPSYE----GYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPS 1755

Query: 414  APIYDMVVPGYR------VPIPIYGMVVPGYRVFIPKY 509
            +P Y    P Y          P Y    P Y    P Y
Sbjct: 1756 SPTYTPSSPTYNPTSPRAFSSPQYSPTSPTYSPTSPSY 1793



 Score = 42.4 bits (98), Expect = 8e-04
 Identities = 27/91 (29%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
 Frame = +3

Query: 270  PRYNIVVSG-YDIVTPRYDMVHP*YSIVEPGY----------HTASPSYTMPTPGYDMLA 416
            P Y  +  G Y   +P + M  P YS   P Y             SPSY+  +P Y   +
Sbjct: 1568 PAYGGMSPGVYSPASPGFSMTSPHYSPTSPSYSPTSPAHHGQSPVSPSYSPTSPSYSPTS 1627

Query: 417  PIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            P Y    P Y    P Y    P Y    P Y
Sbjct: 1628 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1658



 Score = 39.7 bits (91), Expect = 0.005
 Identities = 30/107 (28%), Positives = 38/107 (35%), Gaps = 14/107 (13%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P+++   P Y      Y+  +PR     P YS   P Y   SPSYT  +P Y   
Sbjct: 1745 YSPTSPQYSPSSPTYTPSSPTYNPTSPRA-FSSPQYSPTSPTYSPTSPSYTPSSPQYSPT 1803

Query: 414  APIY--------------DMVVPGYRVPIPIYGMVVPGYRVFIPKYD 512
            +P Y                  P Y    P Y    P Y    P YD
Sbjct: 1804 SPTYTPSPADQPGTSNQYSPSSPTYSPSSPTYSPASPSYSPSSPTYD 1850



 Score = 34.7 bits (78), Expect = 0.16
 Identities = 21/81 (25%), Positives = 31/81 (38%)
 Frame = +3

Query: 225  TS*YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            TS   F  P+++   P Y+     Y   +P+Y    P Y+         S  Y+  +P Y
Sbjct: 1769 TSPRAFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPADQPGTSNQYSPSSPTY 1828

Query: 405  DMLAPIYDMVVPGYRVPIPIY 467
               +P Y    P Y    P Y
Sbjct: 1829 SPSSPTYSPASPSYSPSSPTY 1849
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>RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 2452

 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
 Frame = +3

Query: 219  SLTS*YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTP 398
            ++ S YN + P +++  P+Y+     Y   +P+Y    P YS   P Y   SP Y+  +P
Sbjct: 2278 NVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSP 2337

Query: 399  GYDMLAPIYDMVVP-----------GYRVPIPIYGMVVPGYRVFIPKYD 512
             Y   +P Y    P            Y +  P +    P Y +  P YD
Sbjct: 2338 KYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYD 2386



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPR-----------YDMVHP*YSIVEPGYHTASPS 380
            +N   P ++   P YN   + Y   +P+           Y+++ P YS+  P Y   SP 
Sbjct: 2244 HNIYSPSYSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPK 2303

Query: 381  YTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
            Y+  +P Y   +P Y    P Y    P Y    P Y    PKY
Sbjct: 2304 YSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKY 2346
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>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1887

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 26/80 (32%), Positives = 30/80 (37%)
 Frame = +3

Query: 270  PRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYR 449
            P Y+     Y   +P Y    P YS   P Y   SP+YT  TP Y   +P Y    P Y 
Sbjct: 1683 PSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYS 1741

Query: 450  VPIPIYGMVVPGYRVFIPKY 509
               P Y      Y    P Y
Sbjct: 1742 PASPAYSQTGVKYSPTSPTY 1761



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = +3

Query: 291  SGYDIVTP--RYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPI 464
            SG +I +P   Y      YS   P Y   SPSY+  +P Y   +P Y    P Y    P 
Sbjct: 1660 SGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPN 1719

Query: 465  YGMVVPGYRVFIPKYDS 515
            Y  V P Y    P Y +
Sbjct: 1720 YTPVTPSYSPTSPNYSA 1736



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 26/88 (29%), Positives = 34/88 (38%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P ++   P Y+     Y   +P Y    P YS   P Y   +PSY+  +P Y   +P Y 
Sbjct: 1683 PSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYS 1741

Query: 429  MVVPGYRVPIPIYGMVVPGYRVFIPKYD 512
               P Y      Y    P Y    P YD
Sbjct: 1742 PASPAYSQTGVKYSPTSPTYSPPSPSYD 1769



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 26/78 (33%), Positives = 31/78 (39%)
 Frame = +3

Query: 276  YNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVP 455
            Y+   S Y   +P Y    P YS   P Y   SP Y+  +P Y   +P Y  V P Y   
Sbjct: 1671 YSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPT 1730

Query: 456  IPIYGMVVPGYRVFIPKY 509
             P Y    P Y    P Y
Sbjct: 1731 SPNYS-ASPQYSPASPAY 1747



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/85 (28%), Positives = 34/85 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDML 413
            Y+   P ++   P Y+     Y   +P Y    P Y+ V P Y   SP+Y+  +P Y   
Sbjct: 1685 YSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPA 1743

Query: 414  APIYDMVVPGYRVPIPIYGMVVPGY 488
            +P Y      Y    P Y    P Y
Sbjct: 1744 SPAYSQTGVKYSPTSPTYSPPSPSY 1768



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 29/112 (25%), Positives = 39/112 (34%), Gaps = 19/112 (16%)
 Frame = +3

Query: 240  FVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YS-----------------IVEPG--Y 362
            +  PR+    P +N   +GY   +  Y    P YS                 I  PG  Y
Sbjct: 1612 YASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAY 1671

Query: 363  HTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMVVPGYRVFIPKYDSV 518
              +S +Y+  +P Y   +P Y    P Y    P Y    P Y    P Y  V
Sbjct: 1672 SPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPV 1723



 Score = 35.4 bits (80), Expect = 0.096
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYD 428
            P+H+  + +Y+   S Y   +PRY      YS     Y   SP+YT     Y   +P+Y 
Sbjct: 1803 PQHSPSN-QYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYS 1861

Query: 429  MVVPGYRVPI-PIYGMVVPGY 488
               P +  P  P Y    P +
Sbjct: 1862 PTAPSHYSPTSPAYSPSSPTF 1882



 Score = 35.0 bits (79), Expect = 0.13
 Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 2/111 (1%)
 Frame = +3

Query: 183  TLPSLIVVHKIKSLTS*YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*Y--SIVEP 356
            T P+   V    S TS      P+++   P Y+     Y   +P Y    P Y  S   P
Sbjct: 1716 TSPNYTPVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSP 1775

Query: 357  GYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
             Y   SP Y+  +P Y   +P+Y    P +  P   Y      Y    P+Y
Sbjct: 1776 QYTPGSPQYSPASPKYSPTSPLYSPSSPQHS-PSNQYSPTGSTYSATSPRY 1825



 Score = 30.8 bits (68), Expect = 2.4
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +3

Query: 348  VEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMVVPGYRVFIPKYD 512
            V P Y   SP+YT  +PG    +P Y    P Y    P+Y    P Y    P ++
Sbjct: 1575 VSPSYSPTSPNYTASSPG--GASPNYSPSSPNYSPTSPLYAS--PRYASTTPNFN 1625



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMP-----TPGYDML 413
            P    V P Y+     Y   +P      P YS   P Y   SP Y  P     TP ++  
Sbjct: 1570 PASPSVSPSYSPTSPNYTASSP--GGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQ 1627

Query: 414  APIYDMVVPGYRVPIPIYGMVV 479
            +  Y     GY    P+Y   V
Sbjct: 1628 STGYSPSSSGYSPTSPVYSPTV 1649



 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPT-PGYDM 410
            Y+   PR++     Y+   + Y   +P Y      YS   P Y   +PS+  PT P Y  
Sbjct: 1818 YSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPTAPSHYSPTSPAYSP 1877

Query: 411  LAPIYD 428
             +P ++
Sbjct: 1878 SSPTFE 1883
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>GOGA6_HUMAN (Q9NYA3) Golgin subfamily A member 6 (Golgin linked to PML)|
           (Golgin-like protein)
          Length = 693

 Score = 36.6 bits (83), Expect = 0.043
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
 Frame = -3

Query: 483 REQPCRIWEWEHGIREQPC-------RIWEQACRIRE*AWCNWEKQCGIRVQQWSIRDEP 325
           +EQ  R+ E E  +REQ         R+ EQ  R+RE      E+   +R Q+  +R + 
Sbjct: 333 KEQKQRLQEQEEMLREQEAQRVREQERLCEQNERLREQQKTLQEQGERLRKQEQRLRKQE 392

Query: 324 CRIGE*QCRIRKQQCCIWDEPYCVWGQQSYIRR 226
            R+ + + R++KQ+  +WD+   +W ++  +++
Sbjct: 393 ERLRKEEERLQKQEKRLWDQEERLWKKEERLQK 425
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>PLS1_RAT (P58195) Phospholipid scramblase 1 (PL scramblase 1)|
           (Ca(2+)-dependent phospholipid scramblase 1)
          Length = 335

 Score = 32.3 bits (72), Expect = 0.81
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = -2

Query: 508 YLGMKTRYPGTTMPYMGMGTRYPGTTMSYMGASMSYPG 395
           Y G +  YPG   PY G    YPG    Y G    YPG
Sbjct: 26  YPGPQGPYPGPQGPYAGPQGPYPGPQGPYAGPQGPYPG 63



 Score = 30.8 bits (68), Expect = 2.4
 Identities = 21/59 (35%), Positives = 22/59 (37%)
 Frame = -2

Query: 487 YPGTTMPYMGMGTRYPGTTMSYMGASMSYPGVGMV*LGEAVWYPGSTMEYQG*TMSYRG 311
           Y G+  PY G    YPG    Y G    YPG      G    YPG    Y     SY G
Sbjct: 19  YQGSQGPYPGPQGPYPGPQGPYAGPQGPYPGPQGPYAGPQGPYPGPQPGYPVPPGSYAG 77
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>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated|
           protein 62) (SAP 62) (SF3a66)
          Length = 475

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 24/74 (32%), Positives = 26/74 (35%)
 Frame = +3

Query: 264 VHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPG 443
           VHP   +V      V P    VHP      PG H  +P    P PG    AP      PG
Sbjct: 298 VHPPAPVVHPPTSGVHPPAPGVHP----PTPGVHPPAPGVHPPAPGVHPPAPGVHPPTPG 353

Query: 444 YRVPIPIYGMVVPG 485
              P P      PG
Sbjct: 354 VHPPAPGVHPPAPG 367



 Score = 30.8 bits (68), Expect = 2.4
 Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
 Frame = +3

Query: 243 VVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEP---GYHTASPSYTMPTPGYDML 413
           V P   +VHP  + V      V P    VHP    V P   G H  +P    PTPG    
Sbjct: 298 VHPPAPVVHPPTSGVHPPAPGVHPPTPGVHPPAPGVHPPAPGVHPPAPGVHPPTPGVHPP 357

Query: 414 APIYDMVVPGYRVPIP 461
           AP      PG   P P
Sbjct: 358 APGVHPPAPGVHPPAP 373



 Score = 28.9 bits (63), Expect = 9.0
 Identities = 22/63 (34%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
 Frame = +3

Query: 306 VTPRYDMVHP*YSIVEP---GYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMV 476
           V P   +VHP  S V P   G H  +P    PT G    AP      PG   P P     
Sbjct: 277 VHPPAPVVHPPTSGVHPPAPGVHPPAPVVHPPTSGVHPPAPGVHPPTPGVHPPAPGVHPP 336

Query: 477 VPG 485
            PG
Sbjct: 337 APG 339
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>HAIR_RAT (P97609) Protein hairless|
          Length = 1181

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
 Frame = +2

Query: 359 IPHCFSQLHHAYSRIRHACSHIRH----GCSRI 445
           IPHC S+ HH        CSH  H     C RI
Sbjct: 590 IPHCCSRCHHGLFNTHWRCSHCSHRLCVACGRI 622
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>HAIR_MOUSE (Q61645) Protein hairless|
          Length = 1182

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
 Frame = +2

Query: 359 IPHCFSQLHHAYSRIRHACSHIRH----GCSRI 445
           IPHC S+ HH        CSH  H     C RI
Sbjct: 591 IPHCCSRCHHGLFNTHWRCSHCSHRLCVACGRI 623
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>SF3A2_HUMAN (Q15428) Splicing factor 3A subunit 2 (Spliceosome-associated|
           protein 62) (SAP 62) (SF3a66)
          Length = 464

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 24/74 (32%), Positives = 26/74 (35%)
 Frame = +3

Query: 264 VHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPG 443
           VHP   +V      V P    VHP      PG H  +P    PT G    AP      PG
Sbjct: 287 VHPPAPVVHPPASGVHPPAPGVHP----PAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPG 342

Query: 444 YRVPIPIYGMVVPG 485
              P P      PG
Sbjct: 343 VHPPAPGVHPPAPG 356
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>CISY_THIFE (P51045) Citrate synthase (EC 2.3.3.1)|
          Length = 386

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -1

Query: 521 DNTVIFGDENTVSGNNHAVYGNGNTVSGNNHVVYGSKHVVSGSRHG 384
           D+ +I   E+T++ +  +V   G+T++   HV+ G+   ++G  HG
Sbjct: 183 DSCLILHAEHTINASTFSVLVTGSTLTNPYHVIGGAIGTLAGPLHG 228
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>P200_MYCGE (Q49429) Protein P200|
          Length = 1616

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
 Frame = +3

Query: 312  PRYDMVHP*YSIVEPGYHT-ASPSYTMPTPGYDMLAPIYDMVVPGYRVPI----PIYGMV 476
            P YD   P Y   +P Y +   PS     P YD+  P YD   P Y +      P +   
Sbjct: 1261 PNYDFDEPNYDFDQPSYDSDLQPS----EPQYDVDEPNYDFDEPNYEIESKPSEPQFEPQ 1316

Query: 477  V---PGYRVFIP----KYDSVI 521
            V   PG  VF P    K+DS +
Sbjct: 1317 VEQQPGEAVFEPSAEAKFDSPV 1338
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>CCD70_MACFA (Q4R9C9) Coiled-coil domain-containing protein 70 precursor|
          Length = 232

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 19/103 (18%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
 Frame = -3

Query: 462 WEWEHGIREQPCRIWEQACRIRE*AWCNWEKQCGIRVQQWSIRDEPCRIGE*QCRIRKQQ 283
           W+ +    ++   +WE+   + +     WE++  + V++ ++ +E   + E +  + +++
Sbjct: 129 WKDDKAFWKEDNALWEKDRNLLQEDKALWEEEKALWVEERALLEEEKALWEDKTSLWEEE 188

Query: 282 CCIWDEPYCVWGQQS-YIRRLMILFYVQL*ERGGYILSSVRGQ 157
             +W+E    W + + +I R  +L  +    RG   L+  RG+
Sbjct: 189 NALWEEERAFWVESNGHIAREQMLEELHNANRGRRSLAFSRGR 231
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>SPT5H_CAEEL (Q21338) Transcription elongation factor SPT5 (DRB|
           sensitivity-inducing factor large subunit) (DSIF large
           subunit)
          Length = 1208

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
 Frame = +3

Query: 354 PGYHTASPSYTMPTPGYDMLAPIYDMVVPGYRVP-------IPIYGMVVPGY 488
           P Y + +P Y   TP Y  + P YD    G R P        P YG   P Y
Sbjct: 809 PMYGSKTPMYGAQTPMYGSMTPAYD----GGRTPAYGEGGRTPAYGSKTPAY 856
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>SWRC_BACSU (O31501) Swarming motility protein swrC|
          Length = 1052

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -2

Query: 508 YLGMKTRY---PGTTMPYMGMGTRYPGTTMSYMGASMSYP 398
           Y GM  +    P   MPY+ + T YPG T S +   ++ P
Sbjct: 28  YAGMNMKQESIPDVNMPYLTISTTYPGATPSQVADEVTKP 67
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>AMY_CLOAB (P23671) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 760

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 512 VIFGDENTVSGNNHAVYGNGNTVSGNN 432
           V +   N VSGNN  +Y NGN  + +N
Sbjct: 575 VDYDSSNLVSGNNFTIYYNGNLANSSN 601
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>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
 Frame = +3

Query: 333 P*YSIVEPGYHTASPSYTMPTPGYDMLAPIYDMVVPGYR-VPIPIYGMVVPGYRVFIPKY 509
           P YS   P Y    P+Y  P P    L P Y    P Y   P P Y    P Y    P Y
Sbjct: 407 PTYSPPPPTYSPPPPTYAQPPP----LPPTYSPPPPAYSPPPPPTYSPPPPTYSPPPPAY 462
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>T3RE_BACC1 (P25241) Type III restriction-modification system Bce10987IP enzyme|
           res (EC 3.1.21.5)
          Length = 987

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 381 YTMPTPGYDMLAPIYDMVVPGYRVPIPIYGMVVPGYRVFIPKY 509
           Y +P   YD + P  D++  GY   + ++G  +P   + +PKY
Sbjct: 870 YELPPMRYDSVTPERDLLRHGYNDKVTVFGK-LPRRAIQVPKY 911
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>GLUP_STRGR (Q07006) Glutamyl endopeptidase 2 (EC 3.4.21.82) (Glutamyl|
           endopeptidase II) (Glutamic acid-specific protease)
           (GLUSGP) (Protease E) (SGPE)
          Length = 188

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = -2

Query: 454 GTRYPGTTMSYMGASMSYPGVGMV*LGEAVWYPGSTMEYQG*TMSYRGVTMSYPETTMLY 275
           G+   GT   Y G++          +G+A+   GST +    T++   VT++Y +  +  
Sbjct: 71  GSSPAGTVDLYNGSTQDISSAANAVVGQAIKKSGSTTKVTSGTVTAVNVTVNYGDGPVYN 130

Query: 274 LG*TILC 254
           +G T  C
Sbjct: 131 MGRTTAC 137
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>CYB_EPISM (O48055) Cytochrome b|
          Length = 370

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 27/92 (29%), Positives = 40/92 (43%)
 Frame = -2

Query: 511 SYLGMKTRYPGTTMPYMGMGTRYPGTTMSYMGASMSYPGVGMV*LGEAVWYPGSTMEYQG 332
           SYL  +T + GTT+  M M T + G  + + G    +    +  L  A+ Y GSTM    
Sbjct: 98  SYLNKETWFSGTTLLIMLMATAFFGYVLPW-GQMSFWAATVITNLLTAIPYLGSTMT--- 153

Query: 331 *TMSYRGVTMSYPETTMLYLG*TILCLGTTKL 236
            T  + G  ++ P  T  +    IL  G   L
Sbjct: 154 -TWLWGGFAINDPTLTRFFALHFILPFGIISL 184
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>CSPG5_CHICK (Q9DF69) Chondroitin sulfate proteoglycan 5 precursor (Acidic|
           leucine-rich EGF-like domain-containing brain protein)
           [Contains: Chondroitin sulfate proteoglycan 5, 38 kDa
           form; Chondroitin sulfate proteoglycan 5, 80 kDa form]
          Length = 594

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
 Frame = +3

Query: 270 PRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYDMLAPI------YDM 431
           P   +   G ++  P  D+ +P   + +P     +PS  +P+PG     PI       D+
Sbjct: 141 PGLGLSSPGPNLGLPSLDLPNPNLGLPDPNLGLPNPSLGLPSPGPTPDRPIPNPNPSLDL 200

Query: 432 VVPGYRVPIPIYGMVVP 482
             PG  +  P  G+  P
Sbjct: 201 PDPGLAIQTPNLGLSNP 217


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,757,274
Number of Sequences: 219361
Number of extensions: 1898277
Number of successful extensions: 5657
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5371
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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