ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463175.1| Oryza sativa (japonica cultivar-group), mRNA 178 1e-41
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 178 1e-41
3gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genom... 178 1e-41
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 178 1e-41
5gb|AY107219.1| Zea mays PCO090715 mRNA sequence 168 1e-38
6dbj|AK071403.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 6e-37
7gb|AC146098.3| Pan troglodytes BAC clone RP43-51J12 from 7, comp... 40 6.0
8gb|AC093536.4| Homo sapiens chromosome 16 clone RP11-744D14, com... 40 6.0
9emb|CR925840.6| Zebrafish DNA sequence from clone DKEYP-52F9 in ... 40 6.0
10gb|AC096752.4| Homo sapiens BAC clone RP11-454E2 from 7, complet... 40 6.0
11gb|AC024382.7| Homo sapiens chromosome 8, clone RP11-351C8, comp... 40 6.0
12emb|CR392045.5| Zebrafish DNA sequence from clone DKEY-167C9 in ... 40 6.0
13gb|AC163436.3| Mus musculus chromosome 1, clone RP23-102H12, com... 40 6.0
14emb|AL662792.21| Mouse DNA sequence from clone RP23-52L14 on chr... 40 6.0
15emb|CR628311.1| Human DNA sequence from clone XX-NCIH2171_5AD01,... 40 6.0
16gb|AC091226.3| Drosophila melanogaster 3L BAC RP98-3I13 (Roswell... 40 6.0
17gb|AC069405.6| Drosophila melanogaster 3L BAC RP98-17J20 (Roswel... 40 6.0
18gb|AC116663.1| Rattus norvegicus, clone RP31-109I17, complete se... 40 6.0
19gb|AC016816.5| Homo sapiens chromosome 10 clone RP11-113P9, comp... 40 6.0
20gb|AC027669.11| Homo sapiens chromosome 10 clone RP11-165N2, com... 40 6.0
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
22gb|AE003537.3| Drosophila melanogaster chromosome 3L, section 48... 40 6.0
23gb|AC102900.12| Mus musculus chromosome 1, clone RP24-315J13, co... 40 6.0
24emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4,... 40 6.0 
>ref|XM_463175.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 830

 Score =  178 bits (90), Expect = 1e-41
 Identities = 150/170 (88%)
 Strand = Plus / Plus

                                                                       
Query: 255 cagacgggcatcgtctcgtttttactcagtaacttgagcgatggatggacggggatgtcc 314
           ||||| ||||| ||||||||||||||||||||| | | ||| ||||||||||||||||| 
Sbjct: 308 cagacaggcatggtctcgtttttactcagtaacctcaacgacggatggacggggatgtca 367

                                                                       
Query: 315 tgcattaacactctatccccaatgtcaacatttgtgaggtccacctcgatttttggaggg 374
           | |||| | || ||||| |||||||||| |||||  ||||||||||| ||||||||||||
Sbjct: 368 ttcattgataccctatctccaatgtcaagatttgccaggtccacctcaatttttggaggg 427

                                                             
Query: 375 atgtgctcggccgggcagagatacaccaaactggtcctgattttctgcaa 424
           |||||||| || ||||||||||||||||| |||||||| |||||||||||
Sbjct: 428 atgtgctcagcagggcagagatacaccaagctggtccttattttctgcaa 477
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  178 bits (90), Expect = 1e-41
 Identities = 150/170 (88%)
 Strand = Plus / Plus

                                                                            
Query: 255      cagacgggcatcgtctcgtttttactcagtaacttgagcgatggatggacggggatgtcc 314
                ||||| ||||| ||||||||||||||||||||| | | ||| ||||||||||||||||| 
Sbjct: 22943640 cagacaggcatggtctcgtttttactcagtaacctcaacgacggatggacggggatgtca 22943699

                                                                            
Query: 315      tgcattaacactctatccccaatgtcaacatttgtgaggtccacctcgatttttggaggg 374
                | |||| | || ||||| |||||||||| |||||  ||||||||||| ||||||||||||
Sbjct: 22943700 ttcattgataccctatctccaatgtcaagatttgccaggtccacctcaatttttggaggg 22943759

                                                                  
Query: 375      atgtgctcggccgggcagagatacaccaaactggtcctgattttctgcaa 424
                |||||||| || ||||||||||||||||| |||||||| |||||||||||
Sbjct: 22943760 atgtgctcagcagggcagagatacaccaagctggtccttattttctgcaa 22943809
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>gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete
              sequence
          Length = 184783

 Score =  178 bits (90), Expect = 1e-41
 Identities = 150/170 (88%)
 Strand = Plus / Plus

                                                                          
Query: 255    cagacgggcatcgtctcgtttttactcagtaacttgagcgatggatggacggggatgtcc 314
              ||||| ||||| ||||||||||||||||||||| | | ||| ||||||||||||||||| 
Sbjct: 146170 cagacaggcatggtctcgtttttactcagtaacctcaacgacggatggacggggatgtca 146229

                                                                          
Query: 315    tgcattaacactctatccccaatgtcaacatttgtgaggtccacctcgatttttggaggg 374
              | |||| | || ||||| |||||||||| |||||  ||||||||||| ||||||||||||
Sbjct: 146230 ttcattgataccctatctccaatgtcaagatttgccaggtccacctcaatttttggaggg 146289

                                                                
Query: 375    atgtgctcggccgggcagagatacaccaaactggtcctgattttctgcaa 424
              |||||||| || ||||||||||||||||| |||||||| |||||||||||
Sbjct: 146290 atgtgctcagcagggcagagatacaccaagctggtccttattttctgcaa 146339
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  178 bits (90), Expect = 1e-41
 Identities = 150/170 (88%)
 Strand = Plus / Plus

                                                                            
Query: 255      cagacgggcatcgtctcgtttttactcagtaacttgagcgatggatggacggggatgtcc 314
                ||||| ||||| ||||||||||||||||||||| | | ||| ||||||||||||||||| 
Sbjct: 22936668 cagacaggcatggtctcgtttttactcagtaacctcaacgacggatggacggggatgtca 22936727

                                                                            
Query: 315      tgcattaacactctatccccaatgtcaacatttgtgaggtccacctcgatttttggaggg 374
                | |||| | || ||||| |||||||||| |||||  ||||||||||| ||||||||||||
Sbjct: 22936728 ttcattgataccctatctccaatgtcaagatttgccaggtccacctcaatttttggaggg 22936787

                                                                  
Query: 375      atgtgctcggccgggcagagatacaccaaactggtcctgattttctgcaa 424
                |||||||| || ||||||||||||||||| |||||||| |||||||||||
Sbjct: 22936788 atgtgctcagcagggcagagatacaccaagctggtccttattttctgcaa 22936837
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>gb|AY107219.1| Zea mays PCO090715 mRNA sequence
          Length = 560

 Score =  168 bits (85), Expect = 1e-38
 Identities = 157/181 (86%)
 Strand = Plus / Plus

                                                                       
Query: 222 tcctactcgggtggcttggaggacgggaccttacagacgggcatcgtctcgtttttactc 281
           |||||||||  |||||| |||| |  || ||| ||||||||||| |||||||||||||||
Sbjct: 377 tcctactcgtctggctttgaggccaagatcttgcagacgggcatggtctcgtttttactc 436

                                                                       
Query: 282 agtaacttgagcgatggatggacggggatgtcctgcattaacactctatccccaatgtca 341
           || ||||||||||||||||||||||| ||||| ||||| || || ||||| || |  |||
Sbjct: 437 agcaacttgagcgatggatggacgggaatgtcatgcatcaataccctatctccgacatca 496

                                                                       
Query: 342 acatttgtgaggtccacctcgatttttggagggatgtgctcggccgggcagagatacacc 401
           | |||||| ||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct: 497 agatttgtcaggtccacctcaatttttggagggatgtgctcagctgggcagagatacacc 556

            
Query: 402 a 402
           |
Sbjct: 557 a 557
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>dbj|AK071403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089B10, full
           insert sequence
          Length = 907

 Score =  163 bits (82), Expect = 6e-37
 Identities = 145/166 (87%)
 Strand = Plus / Minus

                                                                       
Query: 255 cagacgggcatcgtctcgtttttactcagtaacttgagcgatggatggacggggatgtcc 314
           ||||| ||||| ||||||||||||||||||||| | | ||| ||||||||||||||||| 
Sbjct: 655 cagacaggcatggtctcgtttttactcagtaacctcaacgacggatggacggggatgtca 596

                                                                       
Query: 315 tgcattaacactctatccccaatgtcaacatttgtgaggtccacctcgatttttggaggg 374
           | |||| | || ||||| |||||| ||| |||||  ||||||||||| ||||||||||||
Sbjct: 595 ttcattgataccctatctccaatgccaagatttgccaggtccacctcaatttttggaggg 536

                                                         
Query: 375 atgtgctcggccgggcagagatacaccaaactggtcctgattttct 420
           |||||||| || ||||||||||||||||| |||||||| |||||||
Sbjct: 535 atgtgctcagcagggcagagatacaccaagctggtccttattttct 490
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>gb|AC146098.3| Pan troglodytes BAC clone RP43-51J12 from 7, complete sequence
          Length = 195811

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    agagggattaaattttcagg 160
              ||||||||||||||||||||
Sbjct: 132062 agagggattaaattttcagg 132043
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>gb|AC093536.4| Homo sapiens chromosome 16 clone RP11-744D14, complete sequence
          Length = 199655

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    aacttgtttgaatctactat 94
             ||||||||||||||||||||
Sbjct: 88808 aacttgtttgaatctactat 88789
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>emb|CR925840.6| Zebrafish DNA sequence from clone DKEYP-52F9 in linkage group 3,
             complete sequence
          Length = 47526

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   aggtaccaaaaggcaaagca 137
             ||||||||||||||||||||
Sbjct: 45783 aggtaccaaaaggcaaagca 45764
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>gb|AC096752.4| Homo sapiens BAC clone RP11-454E2 from 7, complete sequence
          Length = 131629

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  agagggattaaattttcagg 160
            ||||||||||||||||||||
Sbjct: 8092 agagggattaaattttcagg 8111
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>gb|AC024382.7| Homo sapiens chromosome 8, clone RP11-351C8, complete sequence
          Length = 193599

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 19    atatattatttcatgatgacatta 42
             ||||||||||||||||| ||||||
Sbjct: 83283 atatattatttcatgataacatta 83306
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>emb|CR392045.5| Zebrafish DNA sequence from clone DKEY-167C9 in linkage group 3, complete
              sequence
          Length = 152453

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    aggtaccaaaaggcaaagca 137
              ||||||||||||||||||||
Sbjct: 152197 aggtaccaaaaggcaaagca 152216
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>gb|AC163436.3| Mus musculus chromosome 1, clone RP23-102H12, complete sequence
          Length = 198253

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 395    atacaccaaactggtcctga 414
              ||||||||||||||||||||
Sbjct: 113127 atacaccaaactggtcctga 113146
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>emb|AL662792.21| Mouse DNA sequence from clone RP23-52L14 on chromosome 11, complete
             sequence
          Length = 164120

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 60    atcttgaacacaataaacttgttt 83
             |||||||||||||||||| |||||
Sbjct: 51848 atcttgaacacaataaacctgttt 51825
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>emb|CR628311.1| Human DNA sequence from clone XX-NCIH2171_5AD01, complete sequence
          Length = 114317

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 19    atatattatttcatgatgacatta 42
             ||||||||||||||||| ||||||
Sbjct: 32858 atatattatttcatgataacatta 32835
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>gb|AC091226.3| Drosophila melanogaster 3L BAC RP98-3I13 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 165518

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 95     gagcaaactggagcatagcaacta 118
              |||||||||||||||| |||||||
Sbjct: 143453 gagcaaactggagcattgcaacta 143430
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>gb|AC069405.6| Drosophila melanogaster 3L BAC RP98-17J20 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 167638

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 95    gagcaaactggagcatagcaacta 118
             |||||||||||||||| |||||||
Sbjct: 11564 gagcaaactggagcattgcaacta 11541
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>gb|AC116663.1| Rattus norvegicus, clone RP31-109I17, complete sequence
          Length = 165658

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   gcaaagcagatagagggatt 149
             ||||||||||||||||||||
Sbjct: 17587 gcaaagcagatagagggatt 17606
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>gb|AC016816.5| Homo sapiens chromosome 10 clone RP11-113P9, complete sequence
          Length = 174311

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   aaggcaaagcagatagaggg 146
             ||||||||||||||||||||
Sbjct: 67214 aaggcaaagcagatagaggg 67233
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>gb|AC027669.11| Homo sapiens chromosome 10 clone RP11-165N2, complete sequence
          Length = 177135

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    aaggcaaagcagatagaggg 146
              ||||||||||||||||||||
Sbjct: 154020 aaggcaaagcagatagaggg 154039
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 58     gtatcttgaacacaataaacttgt 81
              |||||||||||| |||||||||||
Sbjct: 451646 gtatcttgaacataataaacttgt 451669
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>gb|AE003537.3| Drosophila melanogaster chromosome 3L, section 48 of 83 of the complete
              sequence
          Length = 282116

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 95     gagcaaactggagcatagcaacta 118
              |||||||||||||||| |||||||
Sbjct: 207276 gagcaaactggagcattgcaacta 207253
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>gb|AC102900.12| Mus musculus chromosome 1, clone RP24-315J13, complete sequence
          Length = 192545

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   atacaccaaactggtcctga 414
             ||||||||||||||||||||
Sbjct: 78656 atacaccaaactggtcctga 78675
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>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13,
             complete sequence
          Length = 130249

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 58    gtatcttgaacacaataaacttgt 81
             |||||||||||| |||||||||||
Sbjct: 90398 gtatcttgaacataataaacttgt 90421


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,466,230
Number of Sequences: 3902068
Number of extensions: 3466230
Number of successful extensions: 64013
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63903
Number of HSP's gapped (non-prelim): 110
length of query: 443
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 421
effective length of database: 17,147,199,772
effective search space: 7218971104012
effective search space used: 7218971104012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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