ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATL1M_ARATH (P0C035) Putative RING-H2 finger protein ATL1M 32 0.68
2ATL5C_ARATH (Q5EAE9) RING-H2 finger protein ATL5C precursor 30 3.4

>ATL1M_ARATH (P0C035) Putative RING-H2 finger protein ATL1M|
          Length = 310

 Score = 32.0 bits (71), Expect = 0.68
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -1

Query: 256 LSCDVCILCLVADLPPLKTMSLLPRLRYFIEQQKLNMWAKRITLFKLCN*TVGRVGEEAN 77
           L C VC+    +DL       +LPR  +      ++MW +  +   LC  TVG V +  +
Sbjct: 118 LECAVCL----SDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGSVEDTTH 173

Query: 76  GG 71
           GG
Sbjct: 174 GG 175



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>ATL5C_ARATH (Q5EAE9) RING-H2 finger protein ATL5C precursor|
          Length = 407

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 19/80 (23%), Positives = 32/80 (40%)
 Frame = -1

Query: 268 HEYELSCDVCILCLVADLPPLKTMSLLPRLRYFIEQQKLNMWAKRITLFKLCN*TVGRVG 89
           H+  L C VC+    A   P + + LLP+ ++    + ++ W    +   LC   V    
Sbjct: 140 HKDGLECAVCL----ARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPED 195

Query: 88  EEANGGYHRWLSLYMAKQSS 29
               G  + W  L  +K  S
Sbjct: 196 ILLIGDCNSWFELQFSKDES 215


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,460,278
Number of Sequences: 219361
Number of extensions: 1345799
Number of successful extensions: 3155
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3155
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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