ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107154.1| Zea mays PCO148860 mRNA sequence 80 7e-12
2emb|AL606625.3|OSJN00039 Oryza sativa genomic DNA, chromosome 4,... 70 7e-09
3emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4,... 70 7e-09
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
5dbj|AK105093.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
6ref|XM_471943.1| Oryza sativa (japonica cultivar-group), predic... 62 2e-06
7dbj|AK099774.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
8dbj|AK061686.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
9ref|XM_471942.1| Oryza sativa (japonica cultivar-group), predic... 54 4e-04
10ref|XM_471940.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
11dbj|AK104524.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
12dbj|AK068652.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
13dbj|AK061807.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
14emb|CR381658.11| Zebrafish DNA sequence from clone CH211-245M20 ... 44 0.38
15gb|AC148025.2| Homo sapiens BAC clone RP11-347N4 from UL, comple... 42 1.5
16gb|AC141283.3| Homo sapiens chromosome 16 clone RP11-347N4, comp... 42 1.5
17gb|AC133561.4| Homo sapiens chromosome 16 clone RP11-598D12, com... 42 1.5
18ref|NM_104756.2| Arabidopsis thaliana aldo-keto reductase/ oxido... 40 5.9
19ref|NM_202327.1| Arabidopsis thaliana aldo-keto reductase/ oxido... 40 5.9
20gb|AC008201.8| Drosophila melanogaster clone BACR11E07, complete... 40 5.9
21gb|AC146632.23| Medicago truncatula clone mth2-57b3, complete se... 40 5.9
22gb|AC123575.10| Medicago truncatula clone mth1-31p6, complete se... 40 5.9
23gb|AC090496.28| Mus musculus strain C57BL/6J clone rp23-469n6 ma... 40 5.9
24gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome 40 5.9
25emb|BX248584.1| Blochmannia floridanus complete genome; segment 1/3 40 5.9
26gb|AY124862.1| Arabidopsis thaliana At1g60730/F8A5_24 mRNA, comp... 40 5.9
27gb|AC023745.3| Drosophila melanogaster X BAC RP98-26N1 (Roswell ... 40 5.9
28gb|AC023693.4| Drosophila melanogaster X BAC RP98-17B23 (Roswell... 40 5.9
29ref|NM_206547.1| Drosophila melanogaster CG10365-RD, transcript ... 40 5.9
30ref|NM_170087.1| Drosophila melanogaster CG10365-RC, transcript ... 40 5.9
31ref|NM_170086.1| Drosophila melanogaster CG10365-RB, transcript ... 40 5.9
32dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 40 5.9
33ref|NM_142919.1| Drosophila melanogaster CG10365-RA, transcript ... 40 5.9
34gb|AC025856.13| Homo sapiens chromosome 8, clone RP11-430K7, com... 40 5.9
35gb|AF361576.1| Arabidopsis thaliana At1g60730/F8A5_24 mRNA, comp... 40 5.9
36gb|AC021393.10| Homo sapiens chromosome 8, clone RP11-27P7, comp... 40 5.9
37ref|XM_692963.1| PREDICTED: Danio rerio similar to GTPase, IMAP ... 40 5.9
38gb|AY007367.1| Lycopersicon esculentum tospovirus resistance pro... 40 5.9
39gb|AC002292.1|AC002292 Arabidopsis thaliana BAC F8A5, complete s... 40 5.9
40dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
41emb|BX004816.11| Zebrafish DNA sequence from clone DKEY-30G5 in ... 40 5.9
42emb|BX815445.1|CNS0ACYE Arabidopsis thaliana Full-length cDNA Co... 40 5.9
43gb|AC008223.4|AC008223 Drosophila melanogaster, chromosome 3R, r... 40 5.9
44dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
45emb|AL929404.19| Mouse DNA sequence from clone RP23-71H9 on chro... 40 5.9
46emb|BX537302.12| Mouse DNA sequence from clone RP23-349I9 on chr... 40 5.9
47gb|AE003744.3| Drosophila melanogaster chromosome 3R, section 82... 40 5.9
48gb|AE003484.3| Drosophila melanogaster chromosome X, section 36 ... 40 5.9
49gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 5.9
50gb|AC104883.16| Mus musculus chromosome 8, clone RP24-263A8, com... 40 5.9
51gb|AC147899.2| Xenopus tropicalis clone CH216-53A2, complete seq... 40 5.9 
>gb|AY107154.1| Zea mays PCO148860 mRNA sequence
          Length = 1102

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 109/132 (82%)
 Strand = Plus / Minus

                                                                       
Query: 304 ctactcagctttccaagatgacaatggaggggtctcagactccttccaggtactaaccat 363
           |||||||| ||||||||| |||||||| ||||||||||| |||||||||||  |  ||||
Sbjct: 778 ctactcagatttccaagaagacaatggcggggtctcagagtccttccaggtgttggccat 719

                                                                       
Query: 364 tggagggtacctgtcaccctgaacatcacctgcagcggcataagactcgagttcagccat 423
           | |||| || | |||||||   |  ||||||||||| ||| | ||||||||||| |||||
Sbjct: 718 ttgaggataacggtcacccaagatttcacctgcagcagcacaggactcgagttcggccat 659

                       
Query: 424 ttcctctggtgt 435
            || ||||||||
Sbjct: 658 ctcatctggtgt 647
to top
>emb|AL606625.3|OSJN00039 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032I19,
             complete sequence
          Length = 145383

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                            
Query: 305   tactcagctttccaagatgacaatggaggggtctcagactccttcca 351
             ||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 25570 tactctgctttccaagacgacaatggaggggtctcagaatccttcca 25524



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                
Query: 404   taagactcgagttcagccatttcctctggtgtgag 438
             |||||||||||||||||||||||||| ||||||||
Sbjct: 16214 taagactcgagttcagccatttcctcaggtgtgag 16180



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                   
Query: 305   tactcagctttccaagatgacaatggaggggtctcaga 342
             |||| |||||||||||||||||| ||||||||||||||
Sbjct: 16319 tactgagctttccaagatgacaagggaggggtctcaga 16282



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 93/115 (80%)
 Strand = Plus / Minus

                                                                        
Query: 312  ctttccaagatgacaatggaggggtctcagactccttccaggtactaaccattggagggt 371
            ||||||| || ||||| |||||||||||| | |||||||||||  |  ||||  ||| ||
Sbjct: 9252 ctttccatgaggacaacggaggggtctcacaatccttccaggtgttggccatctgagcgt 9193

                                                                   
Query: 372  acctgtcaccctgaacatcacctgcagcggcataagactcgagttcagccatttc 426
            ||| |||||| || |||||| | ||||| || || || ||||| |||||||||||
Sbjct: 9192 accagtcaccgtgcacatcagcagcagcagcgtaggattcgagctcagccatttc 9138
to top
>emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008A08,
              complete sequence
          Length = 130521

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                             
Query: 305    tactcagctttccaagatgacaatggaggggtctcagactccttcca 351
              ||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 127922 tactctgctttccaagacgacaatggaggggtctcagaatccttcca 127876



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                 
Query: 404    taagactcgagttcagccatttcctctggtgtgag 438
              |||||||||||||||||||||||||| ||||||||
Sbjct: 118566 taagactcgagttcagccatttcctcaggtgtgag 118532



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                    
Query: 305    tactcagctttccaagatgacaatggaggggtctcaga 342
              |||| |||||||||||||||||| ||||||||||||||
Sbjct: 118671 tactgagctttccaagatgacaagggaggggtctcaga 118634



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 93/115 (80%)
 Strand = Plus / Minus

                                                                          
Query: 312    ctttccaagatgacaatggaggggtctcagactccttccaggtactaaccattggagggt 371
              ||||||| || ||||| |||||||||||| | |||||||||||  |  ||||  ||| ||
Sbjct: 111604 ctttccatgaggacaacggaggggtctcacaatccttccaggtgttggccatctgagcgt 111545

                                                                     
Query: 372    acctgtcaccctgaacatcacctgcagcggcataagactcgagttcagccatttc 426
              ||| |||||| || |||||| | ||||| || || || ||||| |||||||||||
Sbjct: 111544 accagtcaccgtgcacatcagcagcagcagcgtaggattcgagctcagccatttc 111490



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 401   gcataagactcgagttcagccatttc 426
             ||||||||||||||||||||||||||
Sbjct: 93513 gcataagactcgagttcagccatttc 93488



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 313   tttccaagatgacaatggaggggtctcagactcct 347
             ||||||||| ||||| |||||||||||||| ||||
Sbjct: 93601 tttccaagacgacaagggaggggtctcagagtcct 93567
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                               
Query: 305      tactcagctttccaagatgacaatggaggggtctcagactccttcca 351
                ||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 15941357 tactctgctttccaagacgacaatggaggggtctcagaatccttcca 15941311



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                   
Query: 404      taagactcgagttcagccatttcctctggtgtgag 438
                |||||||||||||||||||||||||| ||||||||
Sbjct: 15932001 taagactcgagttcagccatttcctcaggtgtgag 15931967



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 305      tactcagctttccaagatgacaatggaggggtctcaga 342
                |||| |||||||||||||||||| ||||||||||||||
Sbjct: 15932106 tactgagctttccaagatgacaagggaggggtctcaga 15932069



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 93/115 (80%)
 Strand = Plus / Minus

                                                                            
Query: 312      ctttccaagatgacaatggaggggtctcagactccttccaggtactaaccattggagggt 371
                ||||||| || ||||| |||||||||||| | |||||||||||  |  ||||  ||| ||
Sbjct: 15925039 ctttccatgaggacaacggaggggtctcacaatccttccaggtgttggccatctgagcgt 15924980

                                                                       
Query: 372      acctgtcaccctgaacatcacctgcagcggcataagactcgagttcagccatttc 426
                ||| |||||| || |||||| | ||||| || || || ||||| |||||||||||
Sbjct: 15924979 accagtcaccgtgcacatcagcagcagcagcgtaggattcgagctcagccatttc 15924925



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 401      gcataagactcgagttcagccatttc 426
                ||||||||||||||||||||||||||
Sbjct: 15906948 gcataagactcgagttcagccatttc 15906923



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 313      tttccaagatgacaatggaggggtctcagactcct 347
                ||||||||| ||||| |||||||||||||| ||||
Sbjct: 15907036 tttccaagacgacaagggaggggtctcagagtcct 15907002
to top
>dbj|AK105093.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-A01, full
           insert sequence
          Length = 1109

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                          
Query: 305 tactcagctttccaagatgacaatggaggggtctcagactccttcca 351
           ||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 870 tactctgctttccaagacgacaatggaggggtctcagaatccttcca 824
to top
>ref|XM_471943.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1056

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 404 taagactcgagttcagccatttcctctggtgtgag 438
           |||||||||||||||||||||||||| ||||||||
Sbjct: 950 taagactcgagttcagccatttcctcaggtgtgag 916



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 305  tactcagctttccaagatgacaatggaggggtctcaga 342
            |||| |||||||||||||||||| ||||||||||||||
Sbjct: 1055 tactgagctttccaagatgacaagggaggggtctcaga 1018
to top
>dbj|AK099774.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095E15, full
           insert sequence
          Length = 1374

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 404 taagactcgagttcagccatttcctctggtgtgag 438
           |||||||||||||||||||||||||| ||||||||
Sbjct: 986 taagactcgagttcagccatttcctcaggtgtgag 952



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 305  tactcagctttccaagatgacaatggaggggtctcaga 342
            |||| |||||||||||||||||| ||||||||||||||
Sbjct: 1091 tactgagctttccaagatgacaagggaggggtctcaga 1054
to top
>dbj|AK061686.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-B01, full
           insert sequence
          Length = 1366

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 404 taagactcgagttcagccatttcctctggtgtgag 438
           |||||||||||||||||||||||||| ||||||||
Sbjct: 985 taagactcgagttcagccatttcctcaggtgtgag 951



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 305  tactcagctttccaagatgacaatggaggggtctcaga 342
            |||| |||||||||||||||||| ||||||||||||||
Sbjct: 1090 tactgagctttccaagatgacaagggaggggtctcaga 1053
to top
>ref|XM_471942.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1107

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 93/115 (80%)
 Strand = Plus / Minus

                                                                        
Query: 312  ctttccaagatgacaatggaggggtctcagactccttccaggtactaaccattggagggt 371
            ||||||| || ||||| |||||||||||| | |||||||||||  |  ||||  ||| ||
Sbjct: 1099 ctttccatgaggacaacggaggggtctcacaatccttccaggtgttggccatctgagcgt 1040

                                                                   
Query: 372  acctgtcaccctgaacatcacctgcagcggcataagactcgagttcagccatttc 426
            ||| |||||| || |||||| | ||||| || || || ||||| |||||||||||
Sbjct: 1039 accagtcaccgtgcacatcagcagcagcagcgtaggattcgagctcagccatttc 985
to top
>ref|XM_471940.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1038

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 401 gcataagactcgagttcagccatttc 426
           ||||||||||||||||||||||||||
Sbjct: 941 gcataagactcgagttcagccatttc 916



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 313  tttccaagatgacaatggaggggtctcagactcct 347
            ||||||||| ||||| |||||||||||||| ||||
Sbjct: 1029 tttccaagacgacaagggaggggtctcagagtcct 995
to top
>dbj|AK104524.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-G01, full
           insert sequence
          Length = 1407

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 401 gcataagactcgagttcagccatttc 426
           ||||||||||||||||||||||||||
Sbjct: 995 gcataagactcgagttcagccatttc 970



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 313  tttccaagatgacaatggaggggtctcagactcct 347
            ||||||||| ||||| |||||||||||||| ||||
Sbjct: 1083 tttccaagacgacaagggaggggtctcagagtcct 1049
to top
>dbj|AK068652.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160A22, full
           insert sequence
          Length = 1448

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 401 gcataagactcgagttcagccatttc 426
           ||||||||||||||||||||||||||
Sbjct: 996 gcataagactcgagttcagccatttc 971



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 313  tttccaagatgacaatggaggggtctcagactcct 347
            ||||||||| ||||| |||||||||||||| ||||
Sbjct: 1084 tttccaagacgacaagggaggggtctcagagtcct 1050
to top
>dbj|AK061807.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-A04, full
           insert sequence
          Length = 1106

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 401 gcataagactcgagttcagccatttc 426
           ||||||||||||||||||||||||||
Sbjct: 681 gcataagactcgagttcagccatttc 656



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 313 tttccaagatgacaatggaggggtctcagactcct 347
           ||||||||| ||||| |||||||||||||| ||||
Sbjct: 769 tttccaagacgacaagggaggggtctcagagtcct 735
to top
>emb|CR381658.11| Zebrafish DNA sequence from clone CH211-245M20 in linkage group 3,
             complete sequence
          Length = 159132

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 415   ttcagccatttcctctggtgtg 436
             ||||||||||||||||||||||
Sbjct: 42768 ttcagccatttcctctggtgtg 42789
to top
>gb|AC148025.2| Homo sapiens BAC clone RP11-347N4 from UL, complete sequence
          Length = 198348

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 104    ggtttaattacataatttaaa 124
              |||||||||||||||||||||
Sbjct: 183768 ggtttaattacataatttaaa 183748
to top
>gb|AC141283.3| Homo sapiens chromosome 16 clone RP11-347N4, complete sequence
          Length = 198348

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 104    ggtttaattacataatttaaa 124
              |||||||||||||||||||||
Sbjct: 183768 ggtttaattacataatttaaa 183748
to top
>gb|AC133561.4| Homo sapiens chromosome 16 clone RP11-598D12, complete sequence
          Length = 169866

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 104    ggtttaattacataatttaaa 124
              |||||||||||||||||||||
Sbjct: 142276 ggtttaattacataatttaaa 142256
to top
>ref|NM_104756.2| Arabidopsis thaliana aldo-keto reductase/ oxidoreductase AT1G60730
            transcript variant AT1G60730.1 mRNA, complete cds
          Length = 1397

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 311  gctttccaagatgacaatggaggggtctcaga 342
            ||||||||||| |||||||| || ||||||||
Sbjct: 1098 gctttccaagaagacaatggtggagtctcaga 1067
to top
>ref|NM_202327.1| Arabidopsis thaliana aldo-keto reductase/ oxidoreductase AT1G60730
            transcript variant AT1G60730.2 mRNA, complete cds
          Length = 1401

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 311  gctttccaagatgacaatggaggggtctcaga 342
            ||||||||||| |||||||| || ||||||||
Sbjct: 1102 gctttccaagaagacaatggtggagtctcaga 1071
to top
>gb|AC008201.8| Drosophila melanogaster clone BACR11E07, complete sequence
          Length = 190153

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    tgagccatctatggtaacca 74
             ||||||||||||||||||||
Sbjct: 48217 tgagccatctatggtaacca 48198
to top
>gb|AC146632.23| Medicago truncatula clone mth2-57b3, complete sequence
          Length = 139216

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 103   cggtttaattacataatttaaaca 126
             ||||||||||||||| ||||||||
Sbjct: 40213 cggtttaattacatagtttaaaca 40236



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 103   cggtttaattacataatttaaaca 126
             ||||||||||||||| ||||||||
Sbjct: 40114 cggtttaattacatagtttaaaca 40137
to top
>gb|AC123575.10| Medicago truncatula clone mth1-31p6, complete sequence
          Length = 83007

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   taaacagggttattcgtttt 140
             ||||||||||||||||||||
Sbjct: 19769 taaacagggttattcgtttt 19788
to top
>gb|AC090496.28| Mus musculus strain C57BL/6J clone rp23-469n6 map 14, complete sequence
          Length = 180338

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   catcacagctcagttcatat 263
             ||||||||||||||||||||
Sbjct: 46847 catcacagctcagttcatat 46828
to top
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome
          Length = 1842899

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     tccaaactggattgtttggc 43
              ||||||||||||||||||||
Sbjct: 140672 tccaaactggattgtttggc 140691
to top
>emb|BX248584.1| Blochmannia floridanus complete genome; segment 1/3
          Length = 250050

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   ttgttcaataaaataccgaa 180
             ||||||||||||||||||||
Sbjct: 11850 ttgttcaataaaataccgaa 11831
to top
>gb|AY124862.1| Arabidopsis thaliana At1g60730/F8A5_24 mRNA, complete cds
          Length = 1038

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 311  gctttccaagatgacaatggaggggtctcaga 342
            ||||||||||| |||||||| || ||||||||
Sbjct: 1031 gctttccaagaagacaatggtggagtctcaga 1000
to top
>gb|AC023745.3| Drosophila melanogaster X BAC RP98-26N1 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 179312

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   gtaacaatgacattgtttta 206
             ||||||||||||||||||||
Sbjct: 99470 gtaacaatgacattgtttta 99489
to top
>gb|AC023693.4| Drosophila melanogaster X BAC RP98-17B23 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 164969

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 187  gtaacaatgacattgtttta 206
            ||||||||||||||||||||
Sbjct: 4124 gtaacaatgacattgtttta 4143
to top
>ref|NM_206547.1| Drosophila melanogaster CG10365-RD, transcript variant D (CG10365),
           mRNA
          Length = 1615

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  tgagccatctatggtaacca 74
           ||||||||||||||||||||
Sbjct: 493 tgagccatctatggtaacca 474
to top
>ref|NM_170087.1| Drosophila melanogaster CG10365-RC, transcript variant C (CG10365),
           mRNA
          Length = 1686

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  tgagccatctatggtaacca 74
           ||||||||||||||||||||
Sbjct: 564 tgagccatctatggtaacca 545
to top
>ref|NM_170086.1| Drosophila melanogaster CG10365-RB, transcript variant B (CG10365),
           mRNA
          Length = 1460

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  tgagccatctatggtaacca 74
           ||||||||||||||||||||
Sbjct: 338 tgagccatctatggtaacca 319
to top
>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103
          Length = 1282697

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 381     cctgaacatcacctgcagcg 400
               ||||||||||||||||||||
Sbjct: 1196749 cctgaacatcacctgcagcg 1196730
to top
>ref|NM_142919.1| Drosophila melanogaster CG10365-RA, transcript variant A (CG10365),
           mRNA
          Length = 1391

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  tgagccatctatggtaacca 74
           ||||||||||||||||||||
Sbjct: 269 tgagccatctatggtaacca 250
to top
>gb|AC025856.13| Homo sapiens chromosome 8, clone RP11-430K7, complete sequence
          Length = 167416

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 184    ttggtaacaatgacattgttttaa 207
              ||||||||||||||||| ||||||
Sbjct: 166775 ttggtaacaatgacatttttttaa 166752
to top
>gb|AF361576.1| Arabidopsis thaliana At1g60730/F8A5_24 mRNA, complete cds
          Length = 1349

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 311  gctttccaagatgacaatggaggggtctcaga 342
            ||||||||||| |||||||| || ||||||||
Sbjct: 1077 gctttccaagaagacaatggtggagtctcaga 1046
to top
>gb|AC021393.10| Homo sapiens chromosome 8, clone RP11-27P7, complete sequence
          Length = 150858

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 184   ttggtaacaatgacattgttttaa 207
             ||||||||||||||||| ||||||
Sbjct: 25701 ttggtaacaatgacatttttttaa 25678
to top
>ref|XM_692963.1| PREDICTED: Danio rerio similar to GTPase, IMAP family member 8
           (LOC569567), partial mRNA
          Length = 4970

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 162 tgttcaataaaataccgaagcctt 185
           ||||||||||||||| ||||||||
Sbjct: 335 tgttcaataaaatactgaagcctt 358
to top
>gb|AY007367.1| Lycopersicon esculentum tospovirus resistance protein C (Sw5-c),
             tospovirus resistance protein D (Sw5-d), and tospovirus
             resistance protein E (Sw5-e) genes, complete cds
          Length = 59465

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 303   cctactcagctttccaagatgacaatgg 330
             |||||||||||||||| || ||||||||
Sbjct: 42898 cctactcagctttccaggaggacaatgg 42925



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 303   cctactcagctttccaagatgacaatgg 330
             |||||||||||||||| || ||||||||
Sbjct: 36029 cctactcagctttccaggaggacaatgg 36056
to top
>gb|AC002292.1|AC002292 Arabidopsis thaliana BAC F8A5, complete sequence
          Length = 120787

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 311   gctttccaagatgacaatggaggggtctcaga 342
             ||||||||||| |||||||| || ||||||||
Sbjct: 82324 gctttccaagaagacaatggtggagtctcaga 82355
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 231      cataaaatacacacatcaca 250
                ||||||||||||||||||||
Sbjct: 20489937 cataaaatacacacatcaca 20489956
to top
>emb|BX004816.11| Zebrafish DNA sequence from clone DKEY-30G5 in linkage group 3,
             complete sequence
          Length = 231341

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 162   tgttcaataaaataccgaagcctt 185
             ||||||||||||||| ||||||||
Sbjct: 76820 tgttcaataaaatactgaagcctt 76797
to top
>emb|BX815445.1|CNS0ACYE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS60ZE02 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1295

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 311  gctttccaagatgacaatggaggggtctcaga 342
            ||||||||||| |||||||| || ||||||||
Sbjct: 1051 gctttccaagaagacaatggtggagtctcaga 1020
to top
>gb|AC008223.4|AC008223 Drosophila melanogaster, chromosome 3R, region 95A-95A, BAC clone
              BACR16I18, complete sequence
          Length = 161278

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     tgagccatctatggtaacca 74
              ||||||||||||||||||||
Sbjct: 122281 tgagccatctatggtaacca 122262
to top
>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1254_E07
          Length = 124028

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 231  cataaaatacacacatcaca 250
            ||||||||||||||||||||
Sbjct: 7584 cataaaatacacacatcaca 7603
to top
>emb|AL929404.19| Mouse DNA sequence from clone RP23-71H9 on chromosome 2, complete
              sequence
          Length = 187610

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 152    aagcttttgttgttcaataaaata 175
              |||||| |||||||||||||||||
Sbjct: 164013 aagcttctgttgttcaataaaata 164036
to top
>emb|BX537302.12| Mouse DNA sequence from clone RP23-349I9 on chromosome 7, complete
              sequence
          Length = 214393

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    atcacagctcagttcatatt 264
              ||||||||||||||||||||
Sbjct: 205837 atcacagctcagttcatatt 205818
to top
>gb|AE003744.3| Drosophila melanogaster chromosome 3R, section 82 of 118 of the complete
              sequence
          Length = 244356

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     tgagccatctatggtaacca 74
              ||||||||||||||||||||
Sbjct: 171524 tgagccatctatggtaacca 171505
to top
>gb|AE003484.3| Drosophila melanogaster chromosome X, section 36 of 74 of the complete
              sequence
          Length = 314111

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    gtaacaatgacattgtttta 206
              ||||||||||||||||||||
Sbjct: 154521 gtaacaatgacattgtttta 154540
to top
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 40      tggccatgtaaaggctgagc 59
               ||||||||||||||||||||
Sbjct: 5723122 tggccatgtaaaggctgagc 5723141
to top
>gb|AC104883.16| Mus musculus chromosome 8, clone RP24-263A8, complete sequence
          Length = 198707

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     aaactggattgtttggccat 46
              ||||||||||||||||||||
Sbjct: 117492 aaactggattgtttggccat 117511
to top
>gb|AC147899.2| Xenopus tropicalis clone CH216-53A2, complete sequence
          Length = 158405

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 232   ataaaatacacacatcacagctca 255
             ||||||||||||||| ||||||||
Sbjct: 21513 ataaaatacacacataacagctca 21490


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,340,143
Number of Sequences: 3902068
Number of extensions: 4340143
Number of successful extensions: 86579
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86421
Number of HSP's gapped (non-prelim): 154
length of query: 439
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 417
effective length of database: 17,147,199,772
effective search space: 7150382304924
effective search space used: 7150382304924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top