ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart55c03 |
|---|---|
| Clone Library Name | barley_pub |
>SPD1_ORYSA (Q9SMB1) Spermidine synthase 1 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 1) (SPDSY 1) Length = 323 Score = 64.3 bits (155), Expect = 7e-11 Identities = 29/34 (85%), Positives = 32/34 (94%) Frame = -1 Query: 380 TKSKGPLKFYNSEFHTASFCLPSFARRVIEAKAN 279 TKSKGPLKFYNSE H+ASFCLPSFA+RVI +KAN Sbjct: 290 TKSKGPLKFYNSEIHSASFCLPSFAKRVIGSKAN 323
>SPD1_DATST (Q96556) Spermidine synthase 1 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 1) (SPDSY 1) Length = 308 Score = 60.8 bits (146), Expect = 7e-10 Identities = 26/32 (81%), Positives = 31/32 (96%) Frame = -1 Query: 380 TKSKGPLKFYNSEFHTASFCLPSFARRVIEAK 285 TK++GPLKFYNSE H+ASFCLPSFA+RVIE+K Sbjct: 275 TKTRGPLKFYNSEIHSASFCLPSFAKRVIESK 306
>SPD2_HYONI (O48659) Spermidine synthase 2 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 2) (SPDSY 2) Length = 308 Score = 60.5 bits (145), Expect = 1e-09 Identities = 26/33 (78%), Positives = 31/33 (93%) Frame = -1 Query: 380 TKSKGPLKFYNSEFHTASFCLPSFARRVIEAKA 282 TK++GPLKFYNSE H+ASFCLPSFA+RVIE+ A Sbjct: 275 TKTRGPLKFYNSEIHSASFCLPSFAKRVIESNA 307
>SPD1_ARATH (Q9ZUB3) Spermidine synthase 1 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 1) (SPDSY 1) Length = 334 Score = 60.1 bits (144), Expect = 1e-09 Identities = 25/34 (73%), Positives = 32/34 (94%) Frame = -1 Query: 380 TKSKGPLKFYNSEFHTASFCLPSFARRVIEAKAN 279 +KS GPLKFYN+E H+A+FCLPSFA++VIE+KAN Sbjct: 301 SKSNGPLKFYNAEIHSAAFCLPSFAKKVIESKAN 334
>SPDE_NICSY (O48660) Spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (Aminopropyltransferase) Length = 314 Score = 55.8 bits (133), Expect = 2e-08 Identities = 24/31 (77%), Positives = 28/31 (90%) Frame = -1 Query: 377 KSKGPLKFYNSEFHTASFCLPSFARRVIEAK 285 K+ GP+KFYNSE H ASFCLPSFA+RVIE+K Sbjct: 282 KTLGPMKFYNSELHKASFCLPSFAKRVIESK 312
>SPDE_COFAR (O82147) Spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 316 Score = 55.5 bits (132), Expect = 3e-08 Identities = 23/34 (67%), Positives = 31/34 (91%) Frame = -1 Query: 380 TKSKGPLKFYNSEFHTASFCLPSFARRVIEAKAN 279 +K+ PLKFYNSE H+A+FCLPSFA++VI++KAN Sbjct: 283 SKTMKPLKFYNSEIHSAAFCLPSFAKKVIDSKAN 316
>SPD2_DATST (Q96557) Spermidine synthase 2 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 2) (SPDSY 2) Length = 317 Score = 54.7 bits (130), Expect = 5e-08 Identities = 24/28 (85%), Positives = 25/28 (89%) Frame = -1 Query: 368 GPLKFYNSEFHTASFCLPSFARRVIEAK 285 GPLKFYNSE H ASFCLPSFA+RVIE K Sbjct: 288 GPLKFYNSEIHQASFCLPSFAKRVIETK 315
>SPD1_HYONI (O48658) Spermidine synthase 1 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 1) (SPDSY 1) Length = 315 Score = 53.9 bits (128), Expect = 9e-08 Identities = 24/31 (77%), Positives = 27/31 (87%) Frame = -1 Query: 377 KSKGPLKFYNSEFHTASFCLPSFARRVIEAK 285 K+ PLKFYNSE H ASFCLPSFA+RVIE+K Sbjct: 283 KTIAPLKFYNSEIHQASFCLPSFAKRVIESK 313
>SPDE_LYCES (Q9ZS45) Spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 342 Score = 53.9 bits (128), Expect = 9e-08 Identities = 25/31 (80%), Positives = 26/31 (83%) Frame = -1 Query: 377 KSKGPLKFYNSEFHTASFCLPSFARRVIEAK 285 KS PLKFYNSE H ASFCLPSFA+RVIE K Sbjct: 310 KSIEPLKFYNSEIHQASFCLPSFAKRVIETK 340
>SPD2_ARATH (O48661) Spermidine synthase 2 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 2) (SPDSY 2) Length = 340 Score = 53.5 bits (127), Expect = 1e-07 Identities = 22/33 (66%), Positives = 30/33 (90%) Frame = -1 Query: 377 KSKGPLKFYNSEFHTASFCLPSFARRVIEAKAN 279 KS PLK+YN+E H+A+FCLPSFA++VI++KAN Sbjct: 308 KSHCPLKYYNAEIHSAAFCLPSFAKKVIDSKAN 340
>SPD2_PEA (Q9ZTR0) Spermidine synthase 2 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 2) (SPDSY 2) Length = 342 Score = 50.8 bits (120), Expect = 8e-07 Identities = 23/31 (74%), Positives = 26/31 (83%) Frame = -1 Query: 377 KSKGPLKFYNSEFHTASFCLPSFARRVIEAK 285 KS PLKFYNSE HTA+FCLPSFA+R I +K Sbjct: 310 KSVRPLKFYNSEIHTAAFCLPSFAKRKIGSK 340
>SPD1_PEA (Q9ZTR1) Spermidine synthase 1 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 1) (SPDSY 1) Length = 334 Score = 48.5 bits (114), Expect = 4e-06 Identities = 20/29 (68%), Positives = 24/29 (82%) Frame = -1 Query: 365 PLKFYNSEFHTASFCLPSFARRVIEAKAN 279 PLKFYN E H+A+FCLPSFA+R I +K N Sbjct: 306 PLKFYNREIHSAAFCLPSFAKRAIASKEN 334
>PMT1_TOBAC (Q42963) Putrescine N-methyltransferase 1 (EC 2.1.1.53) (PMT 1)| (A411) Length = 375 Score = 45.4 bits (106), Expect = 3e-05 Identities = 22/31 (70%), Positives = 26/31 (83%), Gaps = 1/31 (3%) Frame = -1 Query: 377 KSK-GPLKFYNSEFHTASFCLPSFARRVIEA 288 KSK GPLKFYNS+ H A+F LPSFAR +IE+ Sbjct: 345 KSKLGPLKFYNSDIHKAAFILPSFARSMIES 375
>PMT3_TOBAC (Q9SEH5) Putrescine N-methyltransferase 3 (EC 2.1.1.53) (PMT 3)| Length = 381 Score = 43.1 bits (100), Expect = 2e-04 Identities = 21/31 (67%), Positives = 25/31 (80%), Gaps = 1/31 (3%) Frame = -1 Query: 377 KSK-GPLKFYNSEFHTASFCLPSFARRVIEA 288 KSK PLKFYNS+ H A+F LPSFAR +IE+ Sbjct: 351 KSKLAPLKFYNSDIHKAAFILPSFARSMIES 381
>PMT2_TOBAC (Q9SEH7) Putrescine N-methyltransferase 2 (EC 2.1.1.53) (PMT 2)| Length = 353 Score = 43.1 bits (100), Expect = 2e-04 Identities = 21/31 (67%), Positives = 25/31 (80%), Gaps = 1/31 (3%) Frame = -1 Query: 377 KSK-GPLKFYNSEFHTASFCLPSFARRVIEA 288 KSK PLKFYNS+ H A+F LPSFAR +IE+ Sbjct: 323 KSKLAPLKFYNSDIHKAAFILPSFARSMIES 353
>PMT4_TOBAC (Q9SEH4) Putrescine N-methyltransferase 4 (EC 2.1.1.53) (PMT 4)| Length = 419 Score = 43.1 bits (100), Expect = 2e-04 Identities = 21/31 (67%), Positives = 25/31 (80%), Gaps = 1/31 (3%) Frame = -1 Query: 377 KSK-GPLKFYNSEFHTASFCLPSFARRVIEA 288 KSK PLKFYNS+ H A+F LPSFAR +IE+ Sbjct: 389 KSKLAPLKFYNSDIHKAAFILPSFARSMIES 419
>SPEE_SCHPO (Q09741) Spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 298 Score = 37.4 bits (85), Expect = 0.009 Identities = 15/23 (65%), Positives = 19/23 (82%) Frame = -1 Query: 359 KFYNSEFHTASFCLPSFARRVIE 291 K+YNSE H ASF LP+FAR V++ Sbjct: 271 KYYNSEIHAASFVLPTFARDVVD 293
>SPEE_NEUCR (Q9Y8H7) Spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 291 Score = 35.4 bits (80), Expect = 0.034 Identities = 13/23 (56%), Positives = 19/23 (82%) Frame = -1 Query: 359 KFYNSEFHTASFCLPSFARRVIE 291 ++YNSE H ASF LP+FA++ +E Sbjct: 269 RYYNSEIHKASFILPTFAKKALE 291
>SPEE_HUMAN (P19623) Spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 302 Score = 34.3 bits (77), Expect = 0.075 Identities = 13/23 (56%), Positives = 18/23 (78%) Frame = -1 Query: 362 LKFYNSEFHTASFCLPSFARRVI 294 LK+YNS+ H A+F LP FAR+ + Sbjct: 276 LKYYNSDVHRAAFVLPEFARKAL 298
>SPEE_MOUSE (Q64674) Spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 302 Score = 33.1 bits (74), Expect = 0.17 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -1 Query: 362 LKFYNSEFHTASFCLPSFARRVI 294 LK+YNS+ H A+F LP F R+ + Sbjct: 276 LKYYNSDMHRAAFVLPEFTRKAL 298
>SPSY_YEAST (Q12455) Spermine synthase (EC 2.5.1.22) (Spermidine| aminopropyltransferase) (SPMSY) Length = 300 Score = 33.1 bits (74), Expect = 0.17 Identities = 12/28 (42%), Positives = 22/28 (78%) Frame = -1 Query: 377 KSKGPLKFYNSEFHTASFCLPSFARRVI 294 + +G LK+YN + H+++F LP++A +VI Sbjct: 271 QEQGKLKYYNPQIHSSAFVLPTWADKVI 298
>SPEE_THEMA (Q9WZC2) Spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 296 Score = 32.7 bits (73), Expect = 0.22 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = -1 Query: 362 LKFYNSEFHTASFCLPSFARR 300 LK+YN E H ASF LP+F ++ Sbjct: 271 LKYYNEEVHVASFALPNFVKK 291
>SPEE2_LEPIN (Q8EXA3) Spermidine synthase 2 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 2) (SPDSY 2) Length = 281 Score = 31.6 bits (70), Expect = 0.49 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = -1 Query: 362 LKFYNSEFHTASFCLPSFARRVIEAK 285 LK+Y++E H A+F LP FA++ I K Sbjct: 256 LKYYSAEMHKAAFVLPQFAQKHIVRK 281
>SPEE_DICDI (Q9XY92) Spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 284 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -1 Query: 362 LKFYNSEFHTASFCLPSFARR 300 +++YN E H ASF LP FA + Sbjct: 260 MQYYNGEVHKASFVLPQFAAK 280
>VASHL_MOUSE (Q8C5G2) Vasohibin-like protein| Length = 355 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -1 Query: 257 LKPGPTRRPALVSDTGRNLS*RRQRESPP 171 LKP P V G++LS RR++ SPP Sbjct: 295 LKPASAHSPTQVRSRGKSLSPRRRQASPP 323
>VASHL_HUMAN (Q86V25) Vasohibin-like protein| Length = 355 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -1 Query: 257 LKPGPTRRPALVSDTGRNLS*RRQRESPP 171 LKP P V G++LS RR++ SPP Sbjct: 295 LKPASAHSPTQVRSRGKSLSPRRRQASPP 323
>SPEE_ARCFU (O27950) Probable spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 269 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -1 Query: 371 KGPLKFYNSEFHTASFCLPSFARRVIEA 288 KG YN + H A+F LP + ++ +EA Sbjct: 240 KGKTVHYNPDVHRAAFALPEWLKKEVEA 267
>SPEE_CLOPE (Q8XMY8) Spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 283 Score = 28.1 bits (61), Expect = 5.4 Identities = 8/23 (34%), Positives = 16/23 (69%) Frame = -1 Query: 359 KFYNSEFHTASFCLPSFARRVIE 291 K+YN++ H F LP++ + ++E Sbjct: 257 KYYNTDLHKGCFALPNYVKEMLE 279
>PRTP_HHV1F (P06490) Processing and transport protein (Infected cell protein| 18.5) (ICP18.5 protein) Length = 780 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/66 (28%), Positives = 27/66 (40%) Frame = +1 Query: 148 YCKLIKKKGGLSLCLR*DRFLPVSETKAGLLVGPGFSHHLHKN*LALASMTLLANDGKQN 327 YC LI G + R F+ V +GL+V P S H + + + AN G Sbjct: 155 YCHLITPSRGATALERVREFM-VGAVGSGLIVPPELSDPSHPCAVCFEELCVTANQGATI 213 Query: 328 DAVWNS 345 A W + Sbjct: 214 AAAWRT 219
>TB182_MOUSE (P58871) 182 kDa tankyrase 1-binding protein (Fragment)| Length = 909 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = -2 Query: 313 HSRGGSSRPRLTNSYEDGD*NQ 248 HSR G++RP+ S++DGD +Q Sbjct: 216 HSRDGAARPKDEGSWQDGDSSQ 237
>SPG3_YEAST (Q04398) Stationary phase protein 3| Length = 127 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 7/38 (18%) Frame = -2 Query: 109 VVLCLRFYFLAT-------WWYENVLNLFFPCSFLI*E 17 V+L RF L T W+Y +++N+FFP F + E Sbjct: 48 VILFYRFCSLFTYFPANSIWYYLSIINIFFPLCFFLYE 85
>SPEE_CLOTE (Q891W4) Spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 281 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -1 Query: 359 KFYNSEFHTASFCLPSFARRVIEA 288 K+Y H+ASF LP F +I A Sbjct: 254 KYYTPRLHSASFVLPKFVENLIFA 277 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,829,260 Number of Sequences: 219361 Number of extensions: 1016062 Number of successful extensions: 1605 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 1592 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1605 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
