ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Y08252.1|DSSS1 D.stramonium mRNA for spermidine synthase 1 60 5e-06
2dbj|AB006691.1| Hyoscyamus niger mRNA for spermidine synthase 2,... 56 9e-05
3gb|AY103592.1| Zea mays PCO075678 mRNA sequence 54 3e-04
4ref|NM_187782.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
5ref|XM_507360.1| PREDICTED Oryza sativa (japonica cultivar-group... 52 0.001
6ref|XM_506281.2| PREDICTED Oryza sativa (japonica cultivar-group... 52 0.001
7emb|AJ251298.1|OSA251298 Oryza sativa mRNA for spermidine syntha... 52 0.001
8dbj|AK099606.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
9dbj|AK060916.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
10gb|BT024141.1| Zea mays clone EL01N0442H12 mRNA sequence 50 0.005
11gb|BT014110.1| Lycopersicon esculentum clone 133214F, mRNA sequence 48 0.021
12emb|AJ345003.1|STU345003 Solanum tuberosum mRNA for spermidine s... 48 0.021
13ref|NM_203110.1| Arabidopsis thaliana unknown protein AT5G26760 ... 44 0.32
14ref|NM_122558.3| Arabidopsis thaliana unknown protein AT5G26760 ... 44 0.32
15gb|BT015786.1| Arabidopsis thaliana At5g26760 mRNA, complete cds 44 0.32
16gb|AY090972.1| Arabidopsis thaliana At5g26760 mRNA sequence 44 0.32
17emb|AJ000732.1|ATAJ732 Arabidopsis thaliana ASKalpha gene 44 0.32
18emb|AL596130.13| Mouse DNA sequence from clone RP23-209O5 on chr... 44 0.32
19gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete seq... 44 0.32
20dbj|AB006692.1| Nicotiana sylvestris mRNA for spermidine synthas... 44 0.32
21emb|AJ006414.1|LES6414 Lycopersicon esculentum mRNA for spermidi... 42 1.3
22gb|AC019077.9| Homo sapiens BAC clone RP11-323J4 from 4, complet... 42 1.3
23gb|AC078961.23| Homo sapiens 4 BAC RP11-486H4 (Roswell Park Canc... 42 1.3
24gb|AC009962.11| Homo sapiens BAC clone RP11-366L5 from 2, comple... 42 1.3
25gb|AY705439.1| Silene latifolia spermidine synthase Y mRNA, part... 42 1.3
26gb|AY705438.1| Silene latifolia spermidine synthase Y gene, part... 42 1.3
27gb|AC153422.5| Mus musculus 10 BAC RP23-427I15 (Roswell Park Can... 42 1.3
28dbj|AB006690.1| Hyoscyamus niger mRNA for spermidine synthase 1,... 42 1.3
29gb|AF030001.1|MMMHC29N7 Mus musculus major histocompatibility lo... 40 5.1
30gb|AC161213.3| Mus musculus chromosome 3, clone RP23-77D22, comp... 40 5.1
31emb|CT009767.6| Mouse DNA sequence from clone RP23-24A13 on chro... 40 5.1
32gb|AC124684.3| Mus musculus BAC clone RP24-375D13 from chromosom... 40 5.1
33gb|AC079113.4| Homo sapiens BAC clone RP11-81E15 from 7, complet... 40 5.1
34gb|AC099759.4| Homo sapiens BAC clone RP11-233O19 from 7, comple... 40 5.1
35gb|AC005061.2| Homo sapiens BAC clone CTB-87E15 from 7, complete... 40 5.1
36emb|AL158835.11| Human DNA sequence from clone RP11-383C5 on chr... 40 5.1
37emb|AL109897.30|HSJ134M13 Human DNA sequence from clone RP1-134M... 40 5.1
38gb|AC104609.10| Drosophila melanogaster X BAC RP98-39F18 (Roswel... 40 5.1
39ref|XM_214443.3| PREDICTED: Rattus norvegicus extracellular matr... 40 5.1
40gb|AC103389.10| Mus musculus chromosome 3, clone RP24-419J17, co... 40 5.1
41emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 i... 40 5.1
42gb|AY705437.1| Silene latifolia spermidine synthase X gene, part... 40 5.1
43gb|AY705436.1| Silene vulgaris spermidine synthase gene, partial... 40 5.1
44gb|AE003443.2| Drosophila melanogaster chromosome X, section 27 ... 40 5.1
45gb|AC006289.1|AC006289 Mus musculus chromosome 17, clone 29_N_7,... 40 5.1
46gb|AC147236.3| Mus musculus BAC clone RP23-357C20 from 1, comple... 40 5.1
47gb|AC117439.5| Homo sapiens 3 BAC RP11-183P11 (Roswell Park Canc... 40 5.1
48dbj|AB015599.1| Coffea arabica mRNA for spermidine synthase, com... 40 5.1 
>emb|Y08252.1|DSSS1 D.stramonium mRNA for spermidine synthase 1
          Length = 1190

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                       
Query: 298 accctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagttgtagaac 357
           |||||| |||| || ||||||||||| |||||||||| ||| | ||| ||||||||||||
Sbjct: 941 accctcttcgcaaaagatggcaaacagaacgatgcagagtgaatctcagagttgtagaac 882

             
Query: 358 tt 359
           ||
Sbjct: 881 tt 880
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>dbj|AB006691.1| Hyoscyamus niger mRNA for spermidine synthase 2, complete cds
          Length = 1263

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                       
Query: 292 tcgatgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagttg 351
           ||||| |||||| | || || ||||||||||| |||||||||| ||| | ||| ||||||
Sbjct: 994 tcgatcaccctcttagcaaaagatggcaaacagaacgatgcagagtgaatctcagagttg 935

                   
Query: 352 tagaactt 359
           ||||||||
Sbjct: 934 tagaactt 927
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>gb|AY103592.1| Zea mays PCO075678 mRNA sequence
          Length = 1471

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                        
Query: 291  ctcgatgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagtt 350
            |||||| |||||| | || || || |||||||| || ||||| ||||||| ||| |||||
Sbjct: 1044 ctcgattaccctctttgcaaaagaaggcaaacagaatgatgccgtgtggatctccgagtt 985

                                       
Query: 351  gtagaacttgagcggccccttggattt 377
            ||||||||| || || ||||| |||||
Sbjct: 984  gtagaacttaaggggtccctttgattt 958
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>ref|NM_187782.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 963

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                       
Query: 295 atgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagttgtag 354
           ||||| ||| |||| || || ||||||||||| ||||| | ||||| |||||| ||||||
Sbjct: 944 atgactctcttcgcaaaagacggcaaacaaaatgatgctgagtggatctcggaattgtag 885

                                     
Query: 355 aacttgagcggccccttggattttgt 380
           ||||| || || || || ||||||||
Sbjct: 884 aacttaagtggtcctttcgattttgt 859
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>ref|XM_507360.1| PREDICTED Oryza sativa (japonica cultivar-group), P0492E07.108 mRNA
          Length = 1297

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                        
Query: 295  atgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagttgtag 354
            ||||| ||| |||| || || ||||||||||| ||||| | ||||| |||||| ||||||
Sbjct: 1089 atgactctcttcgcaaaagacggcaaacaaaatgatgctgagtggatctcggaattgtag 1030

                                      
Query: 355  aacttgagcggccccttggattttgt 380
            ||||| || || || || ||||||||
Sbjct: 1029 aacttaagtggtcctttcgattttgt 1004
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>ref|XM_506281.2| PREDICTED Oryza sativa (japonica cultivar-group), P0492E07.108 mRNA
          Length = 1346

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                        
Query: 295  atgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagttgtag 354
            ||||| ||| |||| || || ||||||||||| ||||| | ||||| |||||| ||||||
Sbjct: 1090 atgactctcttcgcaaaagacggcaaacaaaatgatgctgagtggatctcggaattgtag 1031

                                      
Query: 355  aacttgagcggccccttggattttgt 380
            ||||| || || || || ||||||||
Sbjct: 1030 aacttaagtggtcctttcgattttgt 1005
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>emb|AJ251298.1|OSA251298 Oryza sativa mRNA for spermidine synthase 1 (spdSyn1 gene)
          Length = 1308

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                        
Query: 295  atgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagttgtag 354
            ||||| ||| |||| || || ||||||||||| ||||| | ||||| |||||| ||||||
Sbjct: 1052 atgactctcttcgcaaaagacggcaaacaaaatgatgctgagtggatctcggaattgtag 993

                                      
Query: 355  aacttgagcggccccttggattttgt 380
            ||||| || || || || ||||||||
Sbjct: 992  aacttaagtggtcctttcgattttgt 967
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>dbj|AK099606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013048E04, full
            insert sequence
          Length = 1346

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                        
Query: 295  atgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagttgtag 354
            ||||| ||| |||| || || ||||||||||| ||||| | ||||| |||||| ||||||
Sbjct: 1090 atgactctcttcgcaaaagacggcaaacaaaatgatgctgagtggatctcggaattgtag 1031

                                      
Query: 355  aacttgagcggccccttggattttgt 380
            ||||| || || || || ||||||||
Sbjct: 1030 aacttaagtggtcctttcgattttgt 1005
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>dbj|AK060916.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G07, full
            insert sequence
          Length = 1297

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                        
Query: 295  atgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagttgtag 354
            ||||| ||| |||| || || ||||||||||| ||||| | ||||| |||||| ||||||
Sbjct: 1089 atgactctcttcgcaaaagacggcaaacaaaatgatgctgagtggatctcggaattgtag 1030

                                      
Query: 355  aacttgagcggccccttggattttgt 380
            ||||| || || || || ||||||||
Sbjct: 1029 aacttaagtggtcctttcgattttgt 1004
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>gb|BT024141.1| Zea mays clone EL01N0442H12 mRNA sequence
          Length = 1281

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                       
Query: 291 ctcgatgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagtt 350
           |||||| |||||| | || || || |||||||| || ||||| ||||||| ||| |||||
Sbjct: 985 ctcgattaccctctttgcaaaagaaggcaaacagaatgatgccgtgtggatctccgagtt 926

                    
Query: 351 gtagaactt 359
           |||||||||
Sbjct: 925 gtagaactt 917
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>gb|BT014110.1| Lycopersicon esculentum clone 133214F, mRNA sequence
          Length = 1174

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 316 ggcaaacaaaacgatgcagtgtggaactcggagttgtagaactt 359
           |||||||| |||||||||| ||| | ||| ||||||||||||||
Sbjct: 912 ggcaaacagaacgatgcagagtgaatctcagagttgtagaactt 869
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>emb|AJ345003.1|STU345003 Solanum tuberosum mRNA for spermidine synthase (SpdSy gene)
          Length = 1347

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 292  tcgatgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagttg 351
            ||||| |||||| | ||||||||||||||||| || |||||   ||| | ||| ||||||
Sbjct: 1151 tcgatcaccctcttggcgaatgatggcaaacagaatgatgcttggtgaatctcagagttg 1092

                    
Query: 352  tagaactt 359
            ||||||||
Sbjct: 1091 tagaactt 1084
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>ref|NM_203110.1| Arabidopsis thaliana unknown protein AT5G26760 transcript variant
            AT5G26760.2 mRNA, complete cds
          Length = 2528

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 258  tcaccatcttcataagaattag 279
            ||||||||||||||||||||||
Sbjct: 1300 tcaccatcttcataagaattag 1279
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>ref|NM_122558.3| Arabidopsis thaliana unknown protein AT5G26760 transcript variant
            AT5G26760.1 mRNA, complete cds
          Length = 2820

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 258  tcaccatcttcataagaattag 279
            ||||||||||||||||||||||
Sbjct: 1510 tcaccatcttcataagaattag 1489
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>gb|BT015786.1| Arabidopsis thaliana At5g26760 mRNA, complete cds
          Length = 1293

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 258 tcaccatcttcataagaattag 279
           ||||||||||||||||||||||
Sbjct: 254 tcaccatcttcataagaattag 233
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>gb|AY090972.1| Arabidopsis thaliana At5g26760 mRNA sequence
          Length = 2755

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 258  tcaccatcttcataagaattag 279
            ||||||||||||||||||||||
Sbjct: 1510 tcaccatcttcataagaattag 1489
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>emb|AJ000732.1|ATAJ732 Arabidopsis thaliana ASKalpha gene
          Length = 8645

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 258  tcaccatcttcataagaattag 279
            ||||||||||||||||||||||
Sbjct: 1819 tcaccatcttcataagaattag 1798
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>emb|AL596130.13| Mouse DNA sequence from clone RP23-209O5 on chromosome 11, complete
             sequence
          Length = 203000

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 210   ccctgtgtcagaaaccaaagca 231
             ||||||||||||||||||||||
Sbjct: 56904 ccctgtgtcagaaaccaaagca 56883
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>gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete sequence
          Length = 110946

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 258  tcaccatcttcataagaattag 279
            ||||||||||||||||||||||
Sbjct: 6885 tcaccatcttcataagaattag 6906
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>dbj|AB006692.1| Nicotiana sylvestris mRNA for spermidine synthase, complete cds
          Length = 1168

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 310 aatgatggcaaacaaaacgatgcagtgtggaactcggagttgtagaactt 359
           |||||||||||||| || |||||  |||| | ||| ||||||||||||||
Sbjct: 935 aatgatggcaaacagaatgatgctttgtgaagctcagagttgtagaactt 886
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>emb|AJ006414.1|LES6414 Lycopersicon esculentum mRNA for spermidine synthase
          Length = 1269

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 292  tcgatgaccctcctcgcgaatgatggcaaacaaaacgatgc 332
            ||||| |||||| | ||||||||||||||||| || |||||
Sbjct: 1112 tcgatcaccctcttggcgaatgatggcaaacagaatgatgc 1072
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>gb|AC019077.9| Homo sapiens BAC clone RP11-323J4 from 4, complete sequence
          Length = 190437

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 30    aaactgcagggaaaaaacaaa 50
             |||||||||||||||||||||
Sbjct: 52851 aaactgcagggaaaaaacaaa 52831
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>gb|AC078961.23| Homo sapiens 4 BAC RP11-486H4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 179762

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 30     aaactgcagggaaaaaacaaa 50
              |||||||||||||||||||||
Sbjct: 171259 aaactgcagggaaaaaacaaa 171279
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>gb|AC009962.11| Homo sapiens BAC clone RP11-366L5 from 2, complete sequence
          Length = 177512

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    tttttcttagataagaaaact 34
             |||||||||||||||||||||
Sbjct: 44153 tttttcttagataagaaaact 44173
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>gb|AY705439.1| Silene latifolia spermidine synthase Y mRNA, partial cds
          Length = 700

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 298 accctcctcgcgaatgatggcaaacaaaa 326
           |||||| | ||||||||||||||||||||
Sbjct: 508 accctctttgcgaatgatggcaaacaaaa 480



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 298 accctcctcgcgaatgatggcaaacaaaa 326
           |||||| | ||||||||||||||||||||
Sbjct: 426 accctctttgcgaatgatggcaaacaaaa 398
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>gb|AY705438.1| Silene latifolia spermidine synthase Y gene, partial cds
          Length = 4133

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 298  accctcctcgcgaatgatggcaaacaaaa 326
            |||||| | ||||||||||||||||||||
Sbjct: 4105 accctctttgcgaatgatggcaaacaaaa 4077
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>gb|AC153422.5| Mus musculus 10 BAC RP23-427I15 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 197906

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 37    agggaaaaaacaaattcagaa 57
             |||||||||||||||||||||
Sbjct: 92148 agggaaaaaacaaattcagaa 92128
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>dbj|AB006690.1| Hyoscyamus niger mRNA for spermidine synthase 1, complete cds
          Length = 1213

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 292 tcgatgaccctcctcgcgaatgatggcaaacaaaacgatgc 332
           ||||| |||||| | || |||||||||||||| ||||||||
Sbjct: 984 tcgatcaccctcttggcaaatgatggcaaacagaacgatgc 944
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>gb|AF030001.1|MMMHC29N7 Mus musculus major histocompatibility locus class III
              region:butyrophilin-like protein gene, partial cds; Notch4,
              PBX2, RAGE, lysophatidic acid acyl transferase-alpha,
              palmitoyl-protein thioesterase 2 (PPT2), CREB-RP, and
              tenascin X (TNX) genes, complete cds; and CYP21OHB
              pseudogene, complete sequence
          Length = 201964

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    taagacagatttctccctgt 215
              ||||||||||||||||||||
Sbjct: 111859 taagacagatttctccctgt 111878
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>gb|AC161213.3| Mus musculus chromosome 3, clone RP23-77D22, complete sequence
          Length = 196596

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    aggaaataaaacctgagaca 100
             ||||||||||||||||||||
Sbjct: 97997 aggaaataaaacctgagaca 97978
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>emb|CT009767.6| Mouse DNA sequence from clone RP23-24A13 on chromosome 17, complete
              sequence
          Length = 221442

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    taagacagatttctccctgt 215
              ||||||||||||||||||||
Sbjct: 192917 taagacagatttctccctgt 192936
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>gb|AC124684.3| Mus musculus BAC clone RP24-375D13 from chromosome 1, complete sequence
          Length = 167927

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   ttcagtcaccatcttcataa 272
             ||||||||||||||||||||
Sbjct: 38875 ttcagtcaccatcttcataa 38894
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>gb|AC079113.4| Homo sapiens BAC clone RP11-81E15 from 7, complete sequence
          Length = 94669

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   tcttcataagaattagttag 283
             ||||||||||||||||||||
Sbjct: 63904 tcttcataagaattagttag 63885
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>gb|AC099759.4| Homo sapiens BAC clone RP11-233O19 from 7, complete sequence
          Length = 101955

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    ggaaataaaacctgagacat 101
             ||||||||||||||||||||
Sbjct: 37169 ggaaataaaacctgagacat 37188
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>gb|AC005061.2| Homo sapiens BAC clone CTB-87E15 from 7, complete sequence
          Length = 114828

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    ggaaataaaacctgagacat 101
             ||||||||||||||||||||
Sbjct: 19583 ggaaataaaacctgagacat 19602
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>emb|AL158835.11| Human DNA sequence from clone RP11-383C5 on chromosome 10 Contains a
              aldolase A, fructose-bisphosphate pseudogene 2, four novel
              genes, the gene for erythroid differentiation-related
              factor 1 (EDRF1), the 3' end of the MMP21 gene for matrix
              metalloproteinase 21 and one CpG island, complete sequence
          Length = 174530

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    agacagatttctccctgtgt 217
              ||||||||||||||||||||
Sbjct: 143603 agacagatttctccctgtgt 143622
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>emb|AL109897.30|HSJ134M13 Human DNA sequence from clone RP1-134M13 on chromosome 6q13-14.3 Contains
              the 3' end of the SUMO-1-specific protease (SUSP1) gene,
              the 5' end of the MYO6 gene for Myosin VI (DFNA22 KIAA0389)
              and one CpG island, complete sequence
          Length = 121764

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     aagaaaactgcagggaaaaa 45
              ||||||||||||||||||||
Sbjct: 109800 aagaaaactgcagggaaaaa 109781
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>gb|AC104609.10| Drosophila melanogaster X BAC RP98-39F18 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 165014

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 33    ctgcagggaaaaaacaaattcaga 56
             |||||||||||||||| |||||||
Sbjct: 39255 ctgcagggaaaaaacatattcaga 39232
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>ref|XM_214443.3| PREDICTED: Rattus norvegicus extracellular matrix protein 2, female
            organ and adipocyte specific (predicted)
            (Ecm2_predicted), mRNA
          Length = 1717

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   gggaaaaaacaaattcagaa 57
            ||||||||||||||||||||
Sbjct: 996  gggaaaaaacaaattcagaa 1015
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>gb|AC103389.10| Mus musculus chromosome 3, clone RP24-419J17, complete sequence
          Length = 162643

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    aggaaataaaacctgagaca 100
             ||||||||||||||||||||
Sbjct: 14591 aggaaataaaacctgagaca 14572
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>emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 in linkage group 4,
             complete sequence
          Length = 99176

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    aagaaaactgcagggaaaaa 45
             ||||||||||||||||||||
Sbjct: 54986 aagaaaactgcagggaaaaa 54967
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>gb|AY705437.1| Silene latifolia spermidine synthase X gene, partial cds
          Length = 3711

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  gcgaatgatggcaaacaaaa 326
            ||||||||||||||||||||
Sbjct: 3674 gcgaatgatggcaaacaaaa 3655
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>gb|AY705436.1| Silene vulgaris spermidine synthase gene, partial cds
          Length = 3533

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  gcgaatgatggcaaacaaaa 326
            ||||||||||||||||||||
Sbjct: 3496 gcgaatgatggcaaacaaaa 3477
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>gb|AE003443.2| Drosophila melanogaster chromosome X, section 27 of 74 of the complete
             sequence
          Length = 299153

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 33    ctgcagggaaaaaacaaattcaga 56
             |||||||||||||||| |||||||
Sbjct: 33360 ctgcagggaaaaaacatattcaga 33337
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>gb|AC006289.1|AC006289 Mus musculus chromosome 17, clone 29_N_7, complete sequence
          Length = 201986

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    taagacagatttctccctgt 215
              ||||||||||||||||||||
Sbjct: 111880 taagacagatttctccctgt 111899
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>gb|AC147236.3| Mus musculus BAC clone RP23-357C20 from 1, complete sequence
          Length = 217902

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   ttcagtcaccatcttcataa 272
             ||||||||||||||||||||
Sbjct: 60048 ttcagtcaccatcttcataa 60029
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>gb|AC117439.5| Homo sapiens 3 BAC RP11-183P11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172676

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   gccctggtttcagtcaccat 264
             ||||||||||||||||||||
Sbjct: 22463 gccctggtttcagtcaccat 22444
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>dbj|AB015599.1| Coffea arabica mRNA for spermidine synthase, complete cds
          Length = 1383

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 292 tcgatgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagttg 351
           ||||||||| || | || || ||||||||||| || | |||||  |||| ||| ||||||
Sbjct: 969 tcgatgaccttctttgcaaaagatggcaaacagaaagctgcagaatggatctcagagttg 910

                   
Query: 352 tagaactt 359
           ||||||||
Sbjct: 909 tagaactt 902


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,990,819
Number of Sequences: 3902068
Number of extensions: 3990819
Number of successful extensions: 75865
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75800
Number of HSP's gapped (non-prelim): 65
length of query: 380
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 358
effective length of database: 17,147,199,772
effective search space: 6138697518376
effective search space used: 6138697518376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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