Clone Name | rbart55b06 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_474682.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1128 Score = 61.9 bits (31), Expect = 2e-06 Identities = 100/123 (81%) Strand = Plus / Minus Query: 241 gacaacaactccttgatggggccgtacaccctcgtcgaggctggatggaaatgcgtgctg 300 ||||||| ||||||||| ||||| |||| |||||| || ||||| ||||| |||||| Sbjct: 1013 gacaacagctccttgatcgggccatacatcctcgtggaaatcggatgaaaatgggtgctg 954 Query: 301 aagaagaacgcgatcgagaccctcggagcagcgttctttgccaacaccctatgttccaca 360 ||||| | || |||||||| ||||| ||| |||||| |||| ||| ||||| |||||| Sbjct: 953 aagaaacaggcaatcgagactctcggttcagtgttcttcgccaccactctatgctccaca 894 Query: 361 ctc 363 ||| Sbjct: 893 ctc 891
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 61.9 bits (31), Expect = 2e-06 Identities = 100/123 (81%) Strand = Plus / Minus Query: 241 gacaacaactccttgatggggccgtacaccctcgtcgaggctggatggaaatgcgtgctg 300 ||||||| ||||||||| ||||| |||| |||||| || ||||| ||||| |||||| Sbjct: 5557156 gacaacagctccttgatcgggccatacatcctcgtggaaatcggatgaaaatgggtgctg 5557097 Query: 301 aagaagaacgcgatcgagaccctcggagcagcgttctttgccaacaccctatgttccaca 360 ||||| | || |||||||| ||||| ||| |||||| |||| ||| ||||| |||||| Sbjct: 5557096 aagaaacaggcaatcgagactctcggttcagtgttcttcgccaccactctatgctccaca 5557037 Query: 361 ctc 363 ||| Sbjct: 5557036 ctc 5557034
>dbj|AK067970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124E20, full insert sequence Length = 1387 Score = 61.9 bits (31), Expect = 2e-06 Identities = 100/123 (81%) Strand = Plus / Minus Query: 241 gacaacaactccttgatggggccgtacaccctcgtcgaggctggatggaaatgcgtgctg 300 ||||||| ||||||||| ||||| |||| |||||| || ||||| ||||| |||||| Sbjct: 1023 gacaacagctccttgatcgggccatacatcctcgtggaaatcggatgaaaatgggtgctg 964 Query: 301 aagaagaacgcgatcgagaccctcggagcagcgttctttgccaacaccctatgttccaca 360 ||||| | || |||||||| ||||| ||| |||||| |||| ||| ||||| |||||| Sbjct: 963 aagaaacaggcaatcgagactctcggttcagtgttcttcgccaccactctatgctccaca 904 Query: 361 ctc 363 ||| Sbjct: 903 ctc 901
>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01, complete sequence Length = 162227 Score = 61.9 bits (31), Expect = 2e-06 Identities = 100/123 (81%) Strand = Plus / Minus Query: 241 gacaacaactccttgatggggccgtacaccctcgtcgaggctggatggaaatgcgtgctg 300 ||||||| ||||||||| ||||| |||| |||||| || ||||| ||||| |||||| Sbjct: 14363 gacaacagctccttgatcgggccatacatcctcgtggaaatcggatgaaaatgggtgctg 14304 Query: 301 aagaagaacgcgatcgagaccctcggagcagcgttctttgccaacaccctatgttccaca 360 ||||| | || |||||||| ||||| ||| |||||| |||| ||| ||||| |||||| Sbjct: 14303 aagaaacaggcaatcgagactctcggttcagtgttcttcgccaccactctatgctccaca 14244 Query: 361 ctc 363 ||| Sbjct: 14243 ctc 14241
>emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01, complete sequence Length = 150283 Score = 61.9 bits (31), Expect = 2e-06 Identities = 100/123 (81%) Strand = Plus / Minus Query: 241 gacaacaactccttgatggggccgtacaccctcgtcgaggctggatggaaatgcgtgctg 300 ||||||| ||||||||| ||||| |||| |||||| || ||||| ||||| |||||| Sbjct: 111786 gacaacagctccttgatcgggccatacatcctcgtggaaatcggatgaaaatgggtgctg 111727 Query: 301 aagaagaacgcgatcgagaccctcggagcagcgttctttgccaacaccctatgttccaca 360 ||||| | || |||||||| ||||| ||| |||||| |||| ||| ||||| |||||| Sbjct: 111726 aagaaacaggcaatcgagactctcggttcagtgttcttcgccaccactctatgctccaca 111667 Query: 361 ctc 363 ||| Sbjct: 111666 ctc 111664
>gb|AY110514.1| Zea mays CL948_1 mRNA sequence Length = 1344 Score = 58.0 bits (29), Expect = 3e-05 Identities = 180/233 (77%) Strand = Plus / Minus Query: 199 tctctcacgagggtttccctatacaatggtatgttcttgtcggacaacaactccttgatg 258 ||||||||||| |||||||||||||| || ||||| ||||||| || ||||||||| Sbjct: 1042 tctctcacgagtgtttccctatacaaaggagggttctcctcggacagcagctccttgatt 983 Query: 259 gggccgtacaccctcgtcgaggctggatggaaatgcgtgctgaagaagaacgcgatcgag 318 ||| || || ||||| || ||||||||||| |||||| | |||||||||| Sbjct: 982 ggggnnnacgttcttgtcgaagcgggatggaaatgggtgctgnnnnngcacgcgatcgaa 923 Query: 319 accctcggagcagcgttctttgccaacaccctatgttccacactcctgaacccatcgttg 378 || || || |||| ||||| || | |||||| || || || || |||||| ||||| Sbjct: 922 actcttggttcagcattcttggctaccaccctgtgctcgacgctgctgaacttgtcgtta 863 Query: 379 gagatcagctgtaagagatcgccgacgttcacaatgaatgctccgggtgtcgg 431 |||| |||||| ||||||||||| | ||| || ||||||||||| || ||||| Sbjct: 862 gagaccagctgcaagagatcgcctatgttgacgatgaatgctccaggcgtcgg 810
>gb|AC136842.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0085C16, complete sequence Length = 156069 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 attcacaaatcacaaattcat 135 ||||||||||||||||||||| Sbjct: 141434 attcacaaatcacaaattcat 141454
>gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete sequence Length = 158384 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 110 ctcttattcacaaatcacaaattca 134 |||| |||||||||||||||||||| Sbjct: 71175 ctctaattcacaaatcacaaattca 71151
>gb|AC118347.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0043E10, complete sequence Length = 124591 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 attcacaaatcacaaattcat 135 ||||||||||||||||||||| Sbjct: 91230 attcacaaatcacaaattcat 91210
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 attcacaaatcacaaattcat 135 ||||||||||||||||||||| Sbjct: 22103438 attcacaaatcacaaattcat 22103458
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 attcacaaatcacaaattcat 135 ||||||||||||||||||||| Sbjct: 21997960 attcacaaatcacaaattcat 21997980
>dbj|AP003413.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1151A10 Length = 124344 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 attcacaaatcacaaattcat 135 ||||||||||||||||||||| Sbjct: 9473 attcacaaatcacaaattcat 9493
>dbj|AP003308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1129G05 Length = 132535 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 attcacaaatcacaaattcat 135 ||||||||||||||||||||| Sbjct: 79768 attcacaaatcacaaattcat 79788
>gb|AC141896.5| Mus musculus BAC clone RP23-238B2 from 5, complete sequence Length = 240890 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 118 cacaaatcacaaattcataac 138 ||||||||||||||||||||| Sbjct: 99350 cacaaatcacaaattcataac 99370
>emb|CT573055.2| Medicago truncatula chromosome 5 clone mth2-75o19, COMPLETE SEQUENCE Length = 121343 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 110 ctcttattcacaaatcacaaattca 134 |||| |||||||||||||||||||| Sbjct: 87114 ctctaattcacaaatcacaaattca 87138
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 attcacaaatcacaaattcat 135 ||||||||||||||||||||| Sbjct: 22413385 attcacaaatcacaaattcat 22413405
>emb|AL139111.20| Human DNA sequence from clone RP13-46G5 on chromosome Xq13.1-13.3 Contains the 3' end of the IGBP1 gene for immunoglobulin (CD79A) binding protein 1, the 5' end of the gene for a novel protein similar to diacyglycerol O-acyltransferase homolog 2 (mouse) (DGAT2) and two novel genes, complete sequence Length = 53945 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 tcacaaatcacaaattcataa 137 ||||||||||||||||||||| Sbjct: 16654 tcacaaatcacaaattcataa 16674
>gb|AC154034.1| Medicago truncatula chromosome 7 BAC clone mth2-71n23, complete sequence Length = 125195 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 attcacaaatcacaaattcataac 138 ||||||||| |||||||||||||| Sbjct: 33767 attcacaaaacacaaattcataac 33744
>emb|CR450841.7| Zebrafish DNA sequence from clone DKEY-16N9 in linkage group 11, complete sequence Length = 263287 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 attttattatccatttcata 39 |||||||||||||||||||| Sbjct: 67941 attttattatccatttcata 67960
>ref|XM_387306.1| Gibberella zeae PH-1 chromosome 4 predicted protein (FG07130.1) partial mRNA Length = 639 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 actccttgatggggccgtac 267 |||||||||||||||||||| Sbjct: 295 actccttgatggggccgtac 276
>gb|AC007528.5| Homo sapiens 12 BAC RP11-473N11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188451 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ttcacaaatcacaaattcat 135 |||||||||||||||||||| Sbjct: 172838 ttcacaaatcacaaattcat 172819
>ref|XM_722035.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06471) partial mRNA Length = 780 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 gtaattttattatccatttc 36 |||||||||||||||||||| Sbjct: 380 gtaattttattatccatttc 361
>ref|XM_670009.1| Plasmodium berghei strain ANKA Pb-reticulocyte binding protein (PB000872.03.0) partial mRNA Length = 903 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 gtaattttattatccatttc 36 |||||||||||||||||||| Sbjct: 449 gtaattttattatccatttc 430
>emb|AL157812.5| Human DNA sequence from clone RP11-14B2 on chromosome 13q21.1-21.3 Contains GSSs and STSs, complete sequence Length = 166971 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 109 actcttattcacaaatcacaaatt 132 ||||||||||||||| |||||||| Sbjct: 68368 actcttattcacaaaccacaaatt 68345
>gb|AC106914.5| Rattus norvegicus BAC CH230-12M19 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 235005 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 cacaaatcacaaattcataa 137 |||||||||||||||||||| Sbjct: 194454 cacaaatcacaaattcataa 194473
>gb|AC114975.2| Homo sapiens chromosome 5 clone RP11-484L7, complete sequence Length = 197363 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 taattttattatccatttca 37 |||||||||||||||||||| Sbjct: 73888 taattttattatccatttca 73907
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 attcacaaatcacaaattca 134 |||||||||||||||||||| Sbjct: 9504473 attcacaaatcacaaattca 9504454
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 attcacaaatcacaaattca 134 |||||||||||||||||||| Sbjct: 10166430 attcacaaatcacaaattca 10166449
>dbj|AP003538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0059O19 Length = 144386 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 attcacaaatcacaaattca 134 |||||||||||||||||||| Sbjct: 92095 attcacaaatcacaaattca 92076
>dbj|AP005536.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0055M07 Length = 150901 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 attcacaaatcacaaattca 134 |||||||||||||||||||| Sbjct: 38796 attcacaaatcacaaattca 38815
>dbj|AP004770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017G06 Length = 150628 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 attcacaaatcacaaattca 134 |||||||||||||||||||| Sbjct: 114124 attcacaaatcacaaattca 114143
>gb|AF139500.1|AF139500 Prunus armeniaca p69RF mRNA, partial cds Length = 1280 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 337 tttgccaacaccctatgttccacactcctgaa 368 |||||||| ||||| ||||| ||||||||||| Sbjct: 913 tttgccaataccctgtgttctacactcctgaa 882
>gb|AC006141.2|AC006141 Homo sapiens chromosome 17, clone hRPK.421_E_14, complete sequence Length = 121132 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 taattttattatccatttca 37 |||||||||||||||||||| Sbjct: 70559 taattttattatccatttca 70578
>emb|AL132640.4|CNS01DT5 Human chromosome 14 DNA sequence BAC R-643G16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 177688 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 gtaattttattatccatttc 36 |||||||||||||||||||| Sbjct: 41780 gtaattttattatccatttc 41799
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 283 ggatggaaatgcgtgctgaagaagaacg 310 |||||||| ||||||| ||||||||||| Sbjct: 961041 ggatggaactgcgtgccgaagaagaacg 961014
>emb|AJ278826.1|PBE278826 Plasmodium berghei OMPDC gene, ORF1 to ORF5 DNA with alternative splice sites Length = 13629 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 gtaattttattatccatttc 36 |||||||||||||||||||| Sbjct: 6148 gtaattttattatccatttc 6167 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,639,073 Number of Sequences: 3902068 Number of extensions: 3639073 Number of successful extensions: 61640 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 61434 Number of HSP's gapped (non-prelim): 205 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)