ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
2dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
3dbj|AK101830.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
4dbj|AK067121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
5gb|AC079772.6| Homo sapiens BAC clone RP11-256F13 from 4, comple... 44 0.41
6dbj|AP000438.5| Homo sapiens genomic DNA, chromosome 11q clone:C... 42 1.6
7ref|XM_639137.1| Dictyostelium discoideum hypothetical protein (... 40 6.5
8gb|AC185993.3| Pan troglodytes BAC clone CH251-302B8 from chromo... 40 6.5
9gb|AC182395.3| Pan troglodytes BAC clone CH251-484N21 from chrom... 40 6.5
10gb|AY245699.1| Centrocestus sp. RD-2003 18S ribosomal RNA gene, ... 40 6.5
11gb|AC022616.9| Homo sapiens chromosome 8, clone RP11-726G23, com... 40 6.5
12gb|AC097635.4| Homo sapiens chromosome 3 clone RP11-263O21, comp... 40 6.5
13emb|AL023285.1|HS474A14 Human DNA sequence from clone RP3-474A14... 40 6.5
14gb|AC120036.5| Homo sapiens chromosome 8, clone RP11-1134I14, co... 40 6.5
15gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence 40 6.5
16gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence 40 6.5
17gb|AC122731.16| Pan troglodytes clone rp43-14d7, complete sequence 40 6.5
18gb|AC123981.18| Pan troglodytes clone rp43-130h22, complete sequ... 40 6.5
19gb|AC104182.2| Homo sapiens chromosome 3 clone RP11-141G23, comp... 40 6.5
20gb|AC008627.7| Homo sapiens chromosome 5 clone CTB-160O22, compl... 40 6.5
21gb|AC008386.6| Homo sapiens chromosome 8 clone CTC-227M20, compl... 40 6.5
22emb|AL512624.5|CNS07EFD Human chromosome 14 DNA sequence BAC C-2... 40 6.5
23emb|AL929601.4|CNS08CCG Human chromosome 14 DNA sequence Partial... 40 6.5
24gb|AC132479.2| Homo sapiens BAC clone RP11-769N11 from 2, comple... 40 6.5
25gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complet... 40 6.5
26gb|AC013269.10| Homo sapiens BAC clone RP11-356I10 from 2, compl... 40 6.5
27gb|AC018804.9| Homo sapiens BAC clone RP11-397H17 from 2, comple... 40 6.5
28gb|AC116956.2| Dictyostelium discoideum chromosome 2 map 1418423... 40 6.5
29gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, compl... 40 6.5
30gb|AC092602.2| Homo sapiens BAC clone RP11-134G21 from 2, comple... 40 6.5
31gb|AC018865.4| Homo sapiens BAC clone RP11-32C20 from 2, complet... 40 6.5
32dbj|AP000529.1| Homo sapiens genomic DNA, chromosome 22q11.2, Ca... 40 6.5

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                     
Query: 424      gcatctttaactccagagtcattgcctggagcatctagctcgtctcctgaact 476
                ||||||||||||||||| | |||||| ||| ||||||||||||||||||||||
Sbjct: 22198824 gcatctttaactccagaatgattgcccggaccatctagctcgtctcctgaact 22198772



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 208      aggtcacagacctaaaatca 227
                ||||||||||||||||||||
Sbjct: 22199102 aggtcacagacctaaaatca 22199083



to top

>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0567H04
          Length = 181420

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                 
Query: 424  gcatctttaactccagagtcattgcctggagcatctagctcgtctcctgaact 476
            ||||||||||||||||| | |||||| ||| ||||||||||||||||||||||
Sbjct: 4070 gcatctttaactccagaatgattgcccggaccatctagctcgtctcctgaact 4018



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 208  aggtcacagacctaaaatca 227
            ||||||||||||||||||||
Sbjct: 4348 aggtcacagacctaaaatca 4329



to top

>dbj|AK101830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068I24, full
            insert sequence
          Length = 2539

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                 
Query: 424  gcatctttaactccagagtcattgcctggagcatctagctcgtctcctgaact 476
            ||||||||||||||||| | |||||| ||| ||||||||||||||||||||||
Sbjct: 2110 gcatctttaactccagaatgattgcccggaccatctagctcgtctcctgaact 2058



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 208  aggtcacagacctaaaatca 227
            ||||||||||||||||||||
Sbjct: 2388 aggtcacagacctaaaatca 2369



to top

>dbj|AK067121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096J16, full
           insert sequence
          Length = 1233

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                
Query: 424 gcatctttaactccagagtcattgcctggagcatctagctcgtctcctgaact 476
           ||||||||||||||||| | |||||| ||| ||||||||||||||||||||||
Sbjct: 833 gcatctttaactccagaatgattgcccggaccatctagctcgtctcctgaact 781



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 208  aggtcacagacctaaaatca 227
            ||||||||||||||||||||
Sbjct: 1111 aggtcacagacctaaaatca 1092



to top

>gb|AC079772.6| Homo sapiens BAC clone RP11-256F13 from 4, complete sequence
          Length = 130743

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 5      caatagaatccctcactttctcgaac 30
              ||||||||||||||||||||| ||||
Sbjct: 106413 caatagaatccctcactttctagaac 106438



to top

>dbj|AP000438.5| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-43M24, complete
             sequence
          Length = 148710

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 157   aaaaatccaagatgaacaaca 177
             |||||||||||||||||||||
Sbjct: 82293 aaaaatccaagatgaacaaca 82313



to top

>ref|XM_639137.1| Dictyostelium discoideum hypothetical protein (DDB0217572), partial
           mRNA
          Length = 4203

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 142 acaacaacataatgtaaaaa 161
           ||||||||||||||||||||
Sbjct: 927 acaacaacataatgtaaaaa 946



to top

>gb|AC185993.3| Pan troglodytes BAC clone CH251-302B8 from chromosome 22, complete
             sequence
          Length = 156992

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   aacaacataatgtaaaaatc 163
             ||||||||||||||||||||
Sbjct: 71792 aacaacataatgtaaaaatc 71773



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   aacaacataatgtaaaaatc 163
             ||||||||||||||||||||
Sbjct: 57457 aacaacataatgtaaaaatc 57438



to top

>gb|AC182395.3| Pan troglodytes BAC clone CH251-484N21 from chromosome 2, complete
             sequence
          Length = 176398

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   aacaacataatgtaaaaatc 163
             ||||||||||||||||||||
Sbjct: 75194 aacaacataatgtaaaaatc 75175



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   aacaacataatgtaaaaatc 163
             ||||||||||||||||||||
Sbjct: 60848 aacaacataatgtaaaaatc 60829



to top

>gb|AY245699.1| Centrocestus sp. RD-2003 18S ribosomal RNA gene, partial sequence;
            internal transcribed spacer 1, 5.8S ribosomal RNA gene
            and internal transcribed spacer 2, complete sequence; and
            28S ribosomal RNA gene, partial sequence
          Length = 3389

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  cacacaccaaaagatgcatg 308
            ||||||||||||||||||||
Sbjct: 3338 cacacaccaaaagatgcatg 3319



to top

>gb|AC022616.9| Homo sapiens chromosome 8, clone RP11-726G23, complete sequence
          Length = 191821

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    aacaacataatgtaaaaatc 163
              ||||||||||||||||||||
Sbjct: 125771 aacaacataatgtaaaaatc 125752



to top

>gb|AC097635.4| Homo sapiens chromosome 3 clone RP11-263O21, complete sequence
          Length = 164454

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   tatttacactgacaacaaca 150
             ||||||||||||||||||||
Sbjct: 16736 tatttacactgacaacaaca 16755



to top

>emb|AL023285.1|HS474A14 Human DNA sequence from clone RP3-474A14 on chromosome 1q24.1-25.2
             Contains the 5' end of the TNR gene for tenascin R
             (restrictin, janusin), complete sequence
          Length = 107352

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   ccaggtaggtcacagaccta 221
             ||||||||||||||||||||
Sbjct: 76078 ccaggtaggtcacagaccta 76059



to top

>gb|AC120036.5| Homo sapiens chromosome 8, clone RP11-1134I14, complete sequence
          Length = 177423

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aacaacataatgtaaaaatc 163
             ||||||||||||||||||||
Sbjct: 90281 aacaacataatgtaaaaatc 90300



to top

>gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence
          Length = 196097

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   aacaacataatgtaaaaatc 163
             ||||||||||||||||||||
Sbjct: 53699 aacaacataatgtaaaaatc 53680



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   aacaacataatgtaaaaatc 163
             ||||||||||||||||||||
Sbjct: 39371 aacaacataatgtaaaaatc 39352



to top

>gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence
          Length = 178815

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 144 aacaacataatgtaaaaatc 163
           ||||||||||||||||||||
Sbjct: 90  aacaacataatgtaaaaatc 109



to top

>gb|AC122731.16| Pan troglodytes clone rp43-14d7, complete sequence
          Length = 166903

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aacaacataatgtaaaaatc 163
             ||||||||||||||||||||
Sbjct: 79176 aacaacataatgtaaaaatc 79195



to top

>gb|AC123981.18| Pan troglodytes clone rp43-130h22, complete sequence
          Length = 172816

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aacaacataatgtaaaaatc 163
             ||||||||||||||||||||
Sbjct: 72906 aacaacataatgtaaaaatc 72925



to top

>gb|AC104182.2| Homo sapiens chromosome 3 clone RP11-141G23, complete sequence
          Length = 156818

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   tatttacactgacaacaaca 150
             ||||||||||||||||||||
Sbjct: 91453 tatttacactgacaacaaca 91472



to top

>gb|AC008627.7| Homo sapiens chromosome 5 clone CTB-160O22, complete sequence
          Length = 153553

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   gggtatctgctgcaaaatca 331
             ||||||||||||||||||||
Sbjct: 71817 gggtatctgctgcaaaatca 71798



to top

>gb|AC008386.6| Homo sapiens chromosome 8 clone CTC-227M20, complete sequence
          Length = 121902

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  aacaacataatgtaaaaatc 163
            ||||||||||||||||||||
Sbjct: 9892 aacaacataatgtaaaaatc 9873



to top

>emb|AL512624.5|CNS07EFD Human chromosome 14 DNA sequence BAC C-2311B13 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 154078

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aacaacataatgtaaaaatc 163
             ||||||||||||||||||||
Sbjct: 56872 aacaacataatgtaaaaatc 56891



to top

>emb|AL929601.4|CNS08CCG Human chromosome 14 DNA sequence Partial sequence from BAC R-244H18 of
              library RPCI-11 from chromosome 14 of Homo sapiens (Human),
              complete sequence
          Length = 176156

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    aacaacataatgtaaaaatc 163
              ||||||||||||||||||||
Sbjct: 124624 aacaacataatgtaaaaatc 124605



to top

>gb|AC132479.2| Homo sapiens BAC clone RP11-769N11 from 2, complete sequence
          Length = 168824

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    aacaacataatgtaaaaatc 163
              ||||||||||||||||||||
Sbjct: 165169 aacaacataatgtaaaaatc 165188



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    aacaacataatgtaaaaatc 163
              ||||||||||||||||||||
Sbjct: 150847 aacaacataatgtaaaaatc 150866



to top

>gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complete sequence
          Length = 132753

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   aacaacataatgtaaaaatc 163
             ||||||||||||||||||||
Sbjct: 57645 aacaacataatgtaaaaatc 57626



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   aacaacataatgtaaaaatc 163
             ||||||||||||||||||||
Sbjct: 43313 aacaacataatgtaaaaatc 43294



to top

>gb|AC013269.10| Homo sapiens BAC clone RP11-356I10 from 2, complete sequence
          Length = 165797

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aacaacataatgtaaaaatc 163
             ||||||||||||||||||||
Sbjct: 27204 aacaacataatgtaaaaatc 27223



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aacaacataatgtaaaaatc 163
             ||||||||||||||||||||
Sbjct: 12876 aacaacataatgtaaaaatc 12895



to top

>gb|AC018804.9| Homo sapiens BAC clone RP11-397H17 from 2, complete sequence
          Length = 195514

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    aacaacataatgtaaaaatc 163
              ||||||||||||||||||||
Sbjct: 152140 aacaacataatgtaaaaatc 152121



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    aacaacataatgtaaaaatc 163
              ||||||||||||||||||||
Sbjct: 137807 aacaacataatgtaaaaatc 137788



to top

>gb|AC116956.2| Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4,
              complete sequence
          Length = 266544

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    acaacaacataatgtaaaaa 161
              ||||||||||||||||||||
Sbjct: 244871 acaacaacataatgtaaaaa 244890



to top

>gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, complete sequence
          Length = 219471

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    aacaacataatgtaaaaatc 163
              ||||||||||||||||||||
Sbjct: 159141 aacaacataatgtaaaaatc 159160



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    aacaacataatgtaaaaatc 163
              ||||||||||||||||||||
Sbjct: 144813 aacaacataatgtaaaaatc 144832



to top

>gb|AC092602.2| Homo sapiens BAC clone RP11-134G21 from 2, complete sequence
          Length = 166299

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    aacaacataatgtaaaaatc 163
              ||||||||||||||||||||
Sbjct: 152322 aacaacataatgtaaaaatc 152341



to top

>gb|AC018865.4| Homo sapiens BAC clone RP11-32C20 from 2, complete sequence
          Length = 165411

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    aacaacataatgtaaaaatc 163
              ||||||||||||||||||||
Sbjct: 156630 aacaacataatgtaaaaatc 156649



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    aacaacataatgtaaaaatc 163
              ||||||||||||||||||||
Sbjct: 142297 aacaacataatgtaaaaatc 142316



to top

>dbj|AP000529.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
             clone:c3G11
          Length = 37981

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aacaacataatgtaaaaatc 163
             ||||||||||||||||||||
Sbjct: 21837 aacaacataatgtaaaaatc 21856


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,819,625
Number of Sequences: 3902068
Number of extensions: 3819625
Number of successful extensions: 73031
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72941
Number of HSP's gapped (non-prelim): 90
length of query: 479
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 457
effective length of database: 17,147,199,772
effective search space: 7836270295804
effective search space used: 7836270295804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top