Clone Name | rbart55b04 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 73.8 bits (37), Expect = 5e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 424 gcatctttaactccagagtcattgcctggagcatctagctcgtctcctgaact 476 ||||||||||||||||| | |||||| ||| |||||||||||||||||||||| Sbjct: 22198824 gcatctttaactccagaatgattgcccggaccatctagctcgtctcctgaact 22198772 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 aggtcacagacctaaaatca 227 |||||||||||||||||||| Sbjct: 22199102 aggtcacagacctaaaatca 22199083
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0567H04 Length = 181420 Score = 73.8 bits (37), Expect = 5e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 424 gcatctttaactccagagtcattgcctggagcatctagctcgtctcctgaact 476 ||||||||||||||||| | |||||| ||| |||||||||||||||||||||| Sbjct: 4070 gcatctttaactccagaatgattgcccggaccatctagctcgtctcctgaact 4018 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 aggtcacagacctaaaatca 227 |||||||||||||||||||| Sbjct: 4348 aggtcacagacctaaaatca 4329
>dbj|AK101830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068I24, full insert sequence Length = 2539 Score = 73.8 bits (37), Expect = 5e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 424 gcatctttaactccagagtcattgcctggagcatctagctcgtctcctgaact 476 ||||||||||||||||| | |||||| ||| |||||||||||||||||||||| Sbjct: 2110 gcatctttaactccagaatgattgcccggaccatctagctcgtctcctgaact 2058 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 aggtcacagacctaaaatca 227 |||||||||||||||||||| Sbjct: 2388 aggtcacagacctaaaatca 2369
>dbj|AK067121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096J16, full insert sequence Length = 1233 Score = 73.8 bits (37), Expect = 5e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 424 gcatctttaactccagagtcattgcctggagcatctagctcgtctcctgaact 476 ||||||||||||||||| | |||||| ||| |||||||||||||||||||||| Sbjct: 833 gcatctttaactccagaatgattgcccggaccatctagctcgtctcctgaact 781 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 aggtcacagacctaaaatca 227 |||||||||||||||||||| Sbjct: 1111 aggtcacagacctaaaatca 1092
>gb|AC079772.6| Homo sapiens BAC clone RP11-256F13 from 4, complete sequence Length = 130743 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 5 caatagaatccctcactttctcgaac 30 ||||||||||||||||||||| |||| Sbjct: 106413 caatagaatccctcactttctagaac 106438
>dbj|AP000438.5| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-43M24, complete sequence Length = 148710 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 aaaaatccaagatgaacaaca 177 ||||||||||||||||||||| Sbjct: 82293 aaaaatccaagatgaacaaca 82313
>ref|XM_639137.1| Dictyostelium discoideum hypothetical protein (DDB0217572), partial mRNA Length = 4203 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 acaacaacataatgtaaaaa 161 |||||||||||||||||||| Sbjct: 927 acaacaacataatgtaaaaa 946
>gb|AC185993.3| Pan troglodytes BAC clone CH251-302B8 from chromosome 22, complete sequence Length = 156992 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 71792 aacaacataatgtaaaaatc 71773 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 57457 aacaacataatgtaaaaatc 57438
>gb|AC182395.3| Pan troglodytes BAC clone CH251-484N21 from chromosome 2, complete sequence Length = 176398 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 75194 aacaacataatgtaaaaatc 75175 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 60848 aacaacataatgtaaaaatc 60829
>gb|AY245699.1| Centrocestus sp. RD-2003 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 3389 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 cacacaccaaaagatgcatg 308 |||||||||||||||||||| Sbjct: 3338 cacacaccaaaagatgcatg 3319
>gb|AC022616.9| Homo sapiens chromosome 8, clone RP11-726G23, complete sequence Length = 191821 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 125771 aacaacataatgtaaaaatc 125752
>gb|AC097635.4| Homo sapiens chromosome 3 clone RP11-263O21, complete sequence Length = 164454 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tatttacactgacaacaaca 150 |||||||||||||||||||| Sbjct: 16736 tatttacactgacaacaaca 16755
>emb|AL023285.1|HS474A14 Human DNA sequence from clone RP3-474A14 on chromosome 1q24.1-25.2 Contains the 5' end of the TNR gene for tenascin R (restrictin, janusin), complete sequence Length = 107352 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 ccaggtaggtcacagaccta 221 |||||||||||||||||||| Sbjct: 76078 ccaggtaggtcacagaccta 76059
>gb|AC120036.5| Homo sapiens chromosome 8, clone RP11-1134I14, complete sequence Length = 177423 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 90281 aacaacataatgtaaaaatc 90300
>gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence Length = 196097 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 53699 aacaacataatgtaaaaatc 53680 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 39371 aacaacataatgtaaaaatc 39352
>gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence Length = 178815 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 90 aacaacataatgtaaaaatc 109
>gb|AC122731.16| Pan troglodytes clone rp43-14d7, complete sequence Length = 166903 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 79176 aacaacataatgtaaaaatc 79195
>gb|AC123981.18| Pan troglodytes clone rp43-130h22, complete sequence Length = 172816 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 72906 aacaacataatgtaaaaatc 72925
>gb|AC104182.2| Homo sapiens chromosome 3 clone RP11-141G23, complete sequence Length = 156818 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tatttacactgacaacaaca 150 |||||||||||||||||||| Sbjct: 91453 tatttacactgacaacaaca 91472
>gb|AC008627.7| Homo sapiens chromosome 5 clone CTB-160O22, complete sequence Length = 153553 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 gggtatctgctgcaaaatca 331 |||||||||||||||||||| Sbjct: 71817 gggtatctgctgcaaaatca 71798
>gb|AC008386.6| Homo sapiens chromosome 8 clone CTC-227M20, complete sequence Length = 121902 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 9892 aacaacataatgtaaaaatc 9873
>emb|AL512624.5|CNS07EFD Human chromosome 14 DNA sequence BAC C-2311B13 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 154078 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 56872 aacaacataatgtaaaaatc 56891
>emb|AL929601.4|CNS08CCG Human chromosome 14 DNA sequence Partial sequence from BAC R-244H18 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176156 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 124624 aacaacataatgtaaaaatc 124605
>gb|AC132479.2| Homo sapiens BAC clone RP11-769N11 from 2, complete sequence Length = 168824 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 165169 aacaacataatgtaaaaatc 165188 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 150847 aacaacataatgtaaaaatc 150866
>gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complete sequence Length = 132753 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 57645 aacaacataatgtaaaaatc 57626 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 43313 aacaacataatgtaaaaatc 43294
>gb|AC013269.10| Homo sapiens BAC clone RP11-356I10 from 2, complete sequence Length = 165797 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 27204 aacaacataatgtaaaaatc 27223 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 12876 aacaacataatgtaaaaatc 12895
>gb|AC018804.9| Homo sapiens BAC clone RP11-397H17 from 2, complete sequence Length = 195514 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 152140 aacaacataatgtaaaaatc 152121 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 137807 aacaacataatgtaaaaatc 137788
>gb|AC116956.2| Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence Length = 266544 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 acaacaacataatgtaaaaa 161 |||||||||||||||||||| Sbjct: 244871 acaacaacataatgtaaaaa 244890
>gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, complete sequence Length = 219471 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 159141 aacaacataatgtaaaaatc 159160 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 144813 aacaacataatgtaaaaatc 144832
>gb|AC092602.2| Homo sapiens BAC clone RP11-134G21 from 2, complete sequence Length = 166299 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 152322 aacaacataatgtaaaaatc 152341
>gb|AC018865.4| Homo sapiens BAC clone RP11-32C20 from 2, complete sequence Length = 165411 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 156630 aacaacataatgtaaaaatc 156649 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 142297 aacaacataatgtaaaaatc 142316
>dbj|AP000529.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region, clone:c3G11 Length = 37981 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aacaacataatgtaaaaatc 163 |||||||||||||||||||| Sbjct: 21837 aacaacataatgtaaaaatc 21856 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,819,625 Number of Sequences: 3902068 Number of extensions: 3819625 Number of successful extensions: 73031 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72941 Number of HSP's gapped (non-prelim): 90 length of query: 479 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 457 effective length of database: 17,147,199,772 effective search space: 7836270295804 effective search space used: 7836270295804 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)