ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
2dbj|AK105366.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 60 7e-06
4emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa... 60 7e-06
5emb|AL357935.14| Human DNA sequence from clone RP11-80H12 on chr... 44 0.41
6gb|AC103376.7| Mus musculus chromosome 8, clone RP24-226P5, comp... 42 1.6
7gb|AC113201.15| Mus musculus chromosome 6, clone RP23-271G7, com... 42 1.6
8emb|CR376855.11| Zebrafish DNA sequence from clone DKEY-56N2 in ... 42 1.6
9emb|AL359642.12| Human DNA sequence from clone RP11-507F17 on ch... 42 1.6
10gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, com... 42 1.6
11emb|AL731773.20| Mouse DNA sequence from clone RP23-152G20 on ch... 42 1.6
12dbj|AK029208.1| Mus musculus 0 day neonate head cDNA, RIKEN full... 42 1.6
13gb|AC132480.5| Mus musculus BAC clone RP23-11I14 from 6, complet... 42 1.6
14ref|XM_641576.1| Dictyostelium discoideum hypothetical protein (... 40 6.4
15gb|AC146555.5| Medicago truncatula clone mth2-10p14, complete se... 40 6.4
16gb|AC021311.8| Homo sapiens chromosome 8, clone RP11-697L23, com... 40 6.4
17gb|AC090241.9| Homo sapiens chromosome 18, clone RP11-687F6, com... 40 6.4
18gb|AC008764.9| Homo sapiens chromosome 19 clone CTD-3222D19, com... 40 6.4
19gb|AC090373.11| Homo sapiens chromosome 18, clone RP11-776B3, co... 40 6.4
20gb|AC020917.4|AC020917 Homo sapiens chromosome 19 clone CTD-2013... 40 6.4
21emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 6.4
22emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 40 6.4
23emb|AL626775.11| Mouse DNA sequence from clone RP23-325M14 on ch... 40 6.4

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                          
Query: 308      aagatcacggccacttatcattcaagggcacaggaatgatcc 349
                ||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 18896835 aagatcacggccactcaccgttcaagggcacaggaatgatcc 18896876



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 433      cgctcccaccgtcgttatcggcgccagtgctcctgtggct 472
                |||| |||||||| || |||| ||| ||||||||||||||
Sbjct: 18896969 cgcttccaccgtcattttcggtgccggtgctcctgtggct 18897008



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>dbj|AK105366.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-G03, full
           insert sequence
          Length = 852

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 308 aagatcacggccacttatcattcaagggcacaggaatgatcc 349
           ||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 774 aagatcacggccactcaccgttcaagggcacaggaatgatcc 733



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 433 cgctcccaccgtcgttatcggcgccagtgctcctgtggct 472
           |||| |||||||| || |||| ||| ||||||||||||||
Sbjct: 640 cgcttccaccgtcattttcggtgccggtgctcctgtggct 601



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                          
Query: 308      aagatcacggccacttatcattcaagggcacaggaatgatcc 349
                ||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 18823062 aagatcacggccactcaccgttcaagggcacaggaatgatcc 18823103



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 433      cgctcccaccgtcgttatcggcgccagtgctcctgtggct 472
                |||| |||||||| || |||| ||| ||||||||||||||
Sbjct: 18823196 cgcttccaccgtcattttcggtgccggtgctcctgtggct 18823235



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>emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 153064

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 308   aagatcacggccacttatcattcaagggcacaggaatgatcc 349
             ||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 73544 aagatcacggccactcaccgttcaagggcacaggaatgatcc 73503



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 433   cgctcccaccgtcgttatcggcgccagtgctcctgtggct 472
             |||| |||||||| || |||| ||| ||||||||||||||
Sbjct: 73410 cgcttccaccgtcattttcggtgccggtgctcctgtggct 73371



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>emb|AL357935.14| Human DNA sequence from clone RP11-80H12 on chromosome 9 Contains the 5'
              end of the gene for a novel protein (FLJ20300), a
              glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene
              and two CpG islands, complete sequence
          Length = 169047

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 15     tcctttaattggaaaattatat 36
              ||||||||||||||||||||||
Sbjct: 120013 tcctttaattggaaaattatat 120034



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>gb|AC103376.7| Mus musculus chromosome 8, clone RP24-226P5, complete sequence
          Length = 165714

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 12     acatcctttaattggaaaatt 32
              |||||||||||||||||||||
Sbjct: 146771 acatcctttaattggaaaatt 146791



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>gb|AC113201.15| Mus musculus chromosome 6, clone RP23-271G7, complete sequence
          Length = 205816

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 9     gaaacatcctttaattggaaaatta 33
             |||||||||||||||||| ||||||
Sbjct: 28376 gaaacatcctttaattgggaaatta 28400



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>emb|CR376855.11| Zebrafish DNA sequence from clone DKEY-56N2 in linkage group 25,
             complete sequence
          Length = 219164

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 322   ttatcattcaagggcacagga 342
             |||||||||||||||||||||
Sbjct: 55837 ttatcattcaagggcacagga 55817



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>emb|AL359642.12| Human DNA sequence from clone RP11-507F17 on chromosome 9 Contains a
             kertain pseudogene, complete sequence
          Length = 122613

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    tggaaaattatatgctacttc 44
             |||||||||||||||||||||
Sbjct: 62513 tggaaaattatatgctacttc 62533



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>gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, complete sequence
          Length = 247394

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 9      gaaacatcctttaattggaaaatta 33
              |||||||||||||||||| ||||||
Sbjct: 194582 gaaacatcctttaattgggaaatta 194606



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>emb|AL731773.20| Mouse DNA sequence from clone RP23-152G20 on chromosome X, complete
             sequence
          Length = 162215

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 19    ttaattggaaaattatatgctactt 43
             |||||||||||||||||| ||||||
Sbjct: 96637 ttaattggaaaattatattctactt 96661



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>dbj|AK029208.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
            library, clone:4831421K23 product:unclassifiable, full
            insert sequence
          Length = 4364

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 9    gaaacatcctttaattggaaaatta 33
            |||||||||||||||||| ||||||
Sbjct: 3909 gaaacatcctttaattgggaaatta 3933



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>gb|AC132480.5| Mus musculus BAC clone RP23-11I14 from 6, complete sequence
          Length = 230313

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 9     gaaacatcctttaattggaaaatta 33
             |||||||||||||||||| ||||||
Sbjct: 43224 gaaacatcctttaattgggaaatta 43200



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>ref|XM_641576.1| Dictyostelium discoideum hypothetical protein (DDB0190931), partial
           mRNA
          Length = 381

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 aagcataacagctactactc 292
           ||||||||||||||||||||
Sbjct: 352 aagcataacagctactactc 333



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>gb|AC146555.5| Medicago truncatula clone mth2-10p14, complete sequence
          Length = 127640

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   tactactcttcatcatccac 304
             ||||||||||||||||||||
Sbjct: 99640 tactactcttcatcatccac 99621



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>gb|AC021311.8| Homo sapiens chromosome 8, clone RP11-697L23, complete sequence
          Length = 151778

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 7    atgaaacatcctttaattggaaaa 30
            |||||||||||||| |||||||||
Sbjct: 9134 atgaaacatccttttattggaaaa 9157



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>gb|AC090241.9| Homo sapiens chromosome 18, clone RP11-687F6, complete sequence
          Length = 166194

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 18    tttaattggaaaattatatgctac 41
             |||||||||||||||| |||||||
Sbjct: 42271 tttaattggaaaattaaatgctac 42248



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>gb|AC008764.9| Homo sapiens chromosome 19 clone CTD-3222D19, complete sequence
          Length = 172562

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   aactgctggagaaaaaacat 90
            ||||||||||||||||||||
Sbjct: 2679 aactgctggagaaaaaacat 2698



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>gb|AC090373.11| Homo sapiens chromosome 18, clone RP11-776B3, complete sequence
          Length = 143456

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 18     tttaattggaaaattatatgctac 41
              |||||||||||||||| |||||||
Sbjct: 106896 tttaattggaaaattaaatgctac 106873



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>gb|AC020917.4|AC020917 Homo sapiens chromosome 19 clone CTD-2013N17, complete sequence
          Length = 151088

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     aactgctggagaaaaaacat 90
              ||||||||||||||||||||
Sbjct: 142284 aactgctggagaaaaaacat 142303



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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 85      aaacatcttaccaccatttc 104
               ||||||||||||||||||||
Sbjct: 1743263 aaacatcttaccaccatttc 1743282



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>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 206     atgcagaaagtcaagcacagcaca 229
               ||||||||||||| ||||||||||
Sbjct: 1419171 atgcagaaagtcaggcacagcaca 1419194



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>emb|AL626775.11| Mouse DNA sequence from clone RP23-325M14 on chromosome 4, complete
              sequence
          Length = 190641

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    ggtaaagccaaggcaagcat 278
              ||||||||||||||||||||
Sbjct: 134742 ggtaaagccaaggcaagcat 134723


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,129,577
Number of Sequences: 3902068
Number of extensions: 4129577
Number of successful extensions: 72936
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72840
Number of HSP's gapped (non-prelim): 96
length of query: 472
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 450
effective length of database: 17,147,199,772
effective search space: 7716239897400
effective search space used: 7716239897400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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