Clone Name | rbart55a10 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 60.0 bits (30), Expect = 7e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 308 aagatcacggccacttatcattcaagggcacaggaatgatcc 349 ||||||||||||||| | | |||||||||||||||||||||| Sbjct: 18896835 aagatcacggccactcaccgttcaagggcacaggaatgatcc 18896876 Score = 40.1 bits (20), Expect = 6.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 433 cgctcccaccgtcgttatcggcgccagtgctcctgtggct 472 |||| |||||||| || |||| ||| |||||||||||||| Sbjct: 18896969 cgcttccaccgtcattttcggtgccggtgctcctgtggct 18897008
>dbj|AK105366.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-G03, full insert sequence Length = 852 Score = 60.0 bits (30), Expect = 7e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 308 aagatcacggccacttatcattcaagggcacaggaatgatcc 349 ||||||||||||||| | | |||||||||||||||||||||| Sbjct: 774 aagatcacggccactcaccgttcaagggcacaggaatgatcc 733 Score = 40.1 bits (20), Expect = 6.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 433 cgctcccaccgtcgttatcggcgccagtgctcctgtggct 472 |||| |||||||| || |||| ||| |||||||||||||| Sbjct: 640 cgcttccaccgtcattttcggtgccggtgctcctgtggct 601
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 60.0 bits (30), Expect = 7e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 308 aagatcacggccacttatcattcaagggcacaggaatgatcc 349 ||||||||||||||| | | |||||||||||||||||||||| Sbjct: 18823062 aagatcacggccactcaccgttcaagggcacaggaatgatcc 18823103 Score = 40.1 bits (20), Expect = 6.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 433 cgctcccaccgtcgttatcggcgccagtgctcctgtggct 472 |||| |||||||| || |||| ||| |||||||||||||| Sbjct: 18823196 cgcttccaccgtcattttcggtgccggtgctcctgtggct 18823235
>emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153064 Score = 60.0 bits (30), Expect = 7e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 308 aagatcacggccacttatcattcaagggcacaggaatgatcc 349 ||||||||||||||| | | |||||||||||||||||||||| Sbjct: 73544 aagatcacggccactcaccgttcaagggcacaggaatgatcc 73503 Score = 40.1 bits (20), Expect = 6.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 433 cgctcccaccgtcgttatcggcgccagtgctcctgtggct 472 |||| |||||||| || |||| ||| |||||||||||||| Sbjct: 73410 cgcttccaccgtcattttcggtgccggtgctcctgtggct 73371
>emb|AL357935.14| Human DNA sequence from clone RP11-80H12 on chromosome 9 Contains the 5' end of the gene for a novel protein (FLJ20300), a glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene and two CpG islands, complete sequence Length = 169047 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 15 tcctttaattggaaaattatat 36 |||||||||||||||||||||| Sbjct: 120013 tcctttaattggaaaattatat 120034
>gb|AC103376.7| Mus musculus chromosome 8, clone RP24-226P5, complete sequence Length = 165714 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 acatcctttaattggaaaatt 32 ||||||||||||||||||||| Sbjct: 146771 acatcctttaattggaaaatt 146791
>gb|AC113201.15| Mus musculus chromosome 6, clone RP23-271G7, complete sequence Length = 205816 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 9 gaaacatcctttaattggaaaatta 33 |||||||||||||||||| |||||| Sbjct: 28376 gaaacatcctttaattgggaaatta 28400
>emb|CR376855.11| Zebrafish DNA sequence from clone DKEY-56N2 in linkage group 25, complete sequence Length = 219164 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 ttatcattcaagggcacagga 342 ||||||||||||||||||||| Sbjct: 55837 ttatcattcaagggcacagga 55817
>emb|AL359642.12| Human DNA sequence from clone RP11-507F17 on chromosome 9 Contains a kertain pseudogene, complete sequence Length = 122613 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 tggaaaattatatgctacttc 44 ||||||||||||||||||||| Sbjct: 62513 tggaaaattatatgctacttc 62533
>gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, complete sequence Length = 247394 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 9 gaaacatcctttaattggaaaatta 33 |||||||||||||||||| |||||| Sbjct: 194582 gaaacatcctttaattgggaaatta 194606
>emb|AL731773.20| Mouse DNA sequence from clone RP23-152G20 on chromosome X, complete sequence Length = 162215 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 19 ttaattggaaaattatatgctactt 43 |||||||||||||||||| |||||| Sbjct: 96637 ttaattggaaaattatattctactt 96661
>dbj|AK029208.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4831421K23 product:unclassifiable, full insert sequence Length = 4364 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 9 gaaacatcctttaattggaaaatta 33 |||||||||||||||||| |||||| Sbjct: 3909 gaaacatcctttaattgggaaatta 3933
>gb|AC132480.5| Mus musculus BAC clone RP23-11I14 from 6, complete sequence Length = 230313 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 9 gaaacatcctttaattggaaaatta 33 |||||||||||||||||| |||||| Sbjct: 43224 gaaacatcctttaattgggaaatta 43200
>ref|XM_641576.1| Dictyostelium discoideum hypothetical protein (DDB0190931), partial mRNA Length = 381 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 aagcataacagctactactc 292 |||||||||||||||||||| Sbjct: 352 aagcataacagctactactc 333
>gb|AC146555.5| Medicago truncatula clone mth2-10p14, complete sequence Length = 127640 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 tactactcttcatcatccac 304 |||||||||||||||||||| Sbjct: 99640 tactactcttcatcatccac 99621
>gb|AC021311.8| Homo sapiens chromosome 8, clone RP11-697L23, complete sequence Length = 151778 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 atgaaacatcctttaattggaaaa 30 |||||||||||||| ||||||||| Sbjct: 9134 atgaaacatccttttattggaaaa 9157
>gb|AC090241.9| Homo sapiens chromosome 18, clone RP11-687F6, complete sequence Length = 166194 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 tttaattggaaaattatatgctac 41 |||||||||||||||| ||||||| Sbjct: 42271 tttaattggaaaattaaatgctac 42248
>gb|AC008764.9| Homo sapiens chromosome 19 clone CTD-3222D19, complete sequence Length = 172562 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aactgctggagaaaaaacat 90 |||||||||||||||||||| Sbjct: 2679 aactgctggagaaaaaacat 2698
>gb|AC090373.11| Homo sapiens chromosome 18, clone RP11-776B3, complete sequence Length = 143456 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 tttaattggaaaattatatgctac 41 |||||||||||||||| ||||||| Sbjct: 106896 tttaattggaaaattaaatgctac 106873
>gb|AC020917.4|AC020917 Homo sapiens chromosome 19 clone CTD-2013N17, complete sequence Length = 151088 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aactgctggagaaaaaacat 90 |||||||||||||||||||| Sbjct: 142284 aactgctggagaaaaaacat 142303
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aaacatcttaccaccatttc 104 |||||||||||||||||||| Sbjct: 1743263 aaacatcttaccaccatttc 1743282
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 206 atgcagaaagtcaagcacagcaca 229 ||||||||||||| |||||||||| Sbjct: 1419171 atgcagaaagtcaggcacagcaca 1419194
>emb|AL626775.11| Mouse DNA sequence from clone RP23-325M14 on chromosome 4, complete sequence Length = 190641 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 ggtaaagccaaggcaagcat 278 |||||||||||||||||||| Sbjct: 134742 ggtaaagccaaggcaagcat 134723 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,129,577 Number of Sequences: 3902068 Number of extensions: 4129577 Number of successful extensions: 72936 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72840 Number of HSP's gapped (non-prelim): 96 length of query: 472 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 450 effective length of database: 17,147,199,772 effective search space: 7716239897400 effective search space used: 7716239897400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)