ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 56 4e-08
2EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 49 6e-06
3APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 47 2e-05
4APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 34 0.16
5GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX) ... 34 0.16
6DED1_DEBHA (Q6BU54) ATP-dependent RNA helicase DED1 (EC 3.6.1.-) 32 1.0
7P53_CANFA (Q29537) Cellular tumor antigen p53 (Tumor suppressor ... 29 5.1
8LGB3_MEDSA (P14962) Leghemoglobin-3 (Leghemoglobin III) 29 6.7
9KIF17_MOUSE (Q99PW8) Kinesin-like protein KIF17 (MmKIF17) 28 8.7

>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
 Frame = -2

Query: 461 YGFSTNLRACCGAGGGKYNYQNGARCGMSG---------ASACGNPSSSLSWDGIHLTEA 309
           +GF  +L +CCG GG KYNY  G  CGM              C  P  ++ WDG+H T+A
Sbjct: 294 HGFKGSLVSCCGHGG-KYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQA 352

Query: 308 AYKKIAD 288
           A K I D
Sbjct: 353 ANKFIFD 359



to top

>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
 Frame = -2

Query: 461 YGFSTNLRACCGAGGGKYNYQNGARCGMSGAS---------ACGNPSSSLSWDGIHLTEA 309
           +GF   L  CCG GG KYN+   A CG +  +         +C  PS  ++WDG H TEA
Sbjct: 296 HGFEFPLITCCGYGG-KYNFSVTAPCGDTVTADDGTKIVVGSCACPSVRVNWDGAHYTEA 354

Query: 308 AYKKIADGWVNGPYCHPAI 252
           A +   D    G +  P +
Sbjct: 355 ANEYFFDQISTGAFSDPPV 373



to top

>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 24/56 (42%), Positives = 28/56 (50%)
 Frame = -2

Query: 461 YGFSTNLRACCGAGGGKYNYQNGARCGMSGASACGNPSSSLSWDGIHLTEAAYKKI 294
           YGF    + CC  G        GA C  S +  C N SS L WDG+H T+ AYK I
Sbjct: 469 YGFEETKKPCCKTG----LLSAGALCKKSTSKICPNTSSYLFWDGVHPTQRAYKTI 520



to top

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -2

Query: 461 YGFSTNLRACCGAGGGKYNYQNGARCGMSGASACGNPSSSLSWDGIHLTEAAYK 300
           YGF    + CC  G  K     G  C         N SS L WDG+H ++ AY+
Sbjct: 386 YGFEEIKKPCCKIGLTK----GGVFCKERTLKNMSNASSYLFWDGLHPSQRAYE 435



to top

>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)|
           (Endo-1,4-beta-glucanase) (Cellulase) (Fragment)
          Length = 224

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -2

Query: 350 SSSLSWDGIHLTEAAYKKIADGW 282
           ++ +SWDG+HL+E  Y KIA+ W
Sbjct: 111 NTDISWDGLHLSEIGYTKIANIW 133



to top

>DED1_DEBHA (Q6BU54) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)|
          Length = 630

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -2

Query: 452 STNLRACCGAGGGKYNYQNGARCGMSG----ASACGNPSSSLSW 333
           S+N      +GGG  +  NG   G SG    +S+ GNPS+S SW
Sbjct: 586 SSNWGGSSSSGGGWGSSNNGGYSGYSGRSNGSSSYGNPSASNSW 629



to top

>P53_CANFA (Q29537) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 381

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 295 IFLYAASVRWMPSQLSDDDGLPHADAPDMPHRAPFW*LYLPPPAPQ 432
           + L  + V W+     D   +P   AP  P  AP W L    P+P+
Sbjct: 43  LLLPESVVNWLDEDSDDAPRMPATSAPTAPGPAPSWPLSSSVPSPK 88



to top

>LGB3_MEDSA (P14962) Leghemoglobin-3 (Leghemoglobin III)|
          Length = 146

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 261 PGHSVLVLVLVLERAPASGCSSVSFLEAGEGRGGSP 154
           PG+SVL   ++LE+APA+     SFL+   G   SP
Sbjct: 22  PGNSVLFYTIILEKAPAAK-GMFSFLKDSAGVQDSP 56



to top

>KIF17_MOUSE (Q99PW8) Kinesin-like protein KIF17 (MmKIF17)|
          Length = 1038

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 280  TQPSAIFLYAASVRWMPSQLSDDDGLPHADAPDMPHRAPF 399
            T P     Y  S   + S LS++  LP    P+MP   PF
Sbjct: 973  TDPMKSLTYHNSPPGLNSSLSNNSALPPTQTPEMPQPRPF 1012


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,894,671
Number of Sequences: 219361
Number of extensions: 1091498
Number of successful extensions: 3472
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3459
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top