ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X52572.1|HVBDG Barley DNA for (1-3,1-4)-beta-D-glucanase (EC... 710 0.0
2emb|X56260.1|HVGLUEND Barley DNA for (1,3;1,4)-beta-glucanase.(E... 682 0.0
3emb|X56775.1|HVGLB1 H.vulgare Glb 1 gene for 1-3,1-4-beta-D-gluc... 666 0.0
4emb|Z22873.1|TABETGLUA T.aestivum beta glucanase mRNA, complete CDS 278 1e-71
5emb|Z22874.1|TABETGLUB T.aestivum (1,3;1,4) beta glucanase mRNA,... 262 7e-67
6emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase 52 0.001
7gb|AF241159.1| Trypanosoma cruzi clone FGz 73 kinetoplast minici... 46 0.082
8emb|AL355303.16| Human DNA sequence from clone RP11-445P17 on ch... 44 0.32
9gb|AC127354.4| Mus musculus BAC clone RP23-91C8 from chromosome ... 42 1.3
10gb|AC022675.7| Mus musculus chromosome 1, clone RP23-59N15, comp... 42 1.3
11gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
12gb|AC132955.3| Mus musculus BAC clone RP24-266J20 from chromosom... 42 1.3
13dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
14dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
15gb|AF433637.1| Oryza sativa clone OsMu10-1 transposon Mu-like re... 42 1.3
16gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
17gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
18emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.3
19emb|AL365314.16| Mouse DNA sequence from clone RP23-106N23 on ch... 42 1.3
20gb|AC164981.2| Mus musculus BAC clone RP23-121F5 from chromosome... 40 5.0
21gb|AC132446.3| Mus musculus BAC clone RP23-175K4 from chromosome... 40 5.0
22gb|AC068006.10| Mus musculus chromosome 7, clone RP23-6I17, comp... 40 5.0
23gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.0
24gb|AC113476.20| Mus musculus chromosome 17, clone RP23-304J1, co... 40 5.0
25gb|AC108477.5| Homo sapiens BAC clone RP11-499F19 from 4, comple... 40 5.0
26emb|CR383660.9| Zebrafish DNA sequence from clone DKEY-1H22 in l... 40 5.0
27emb|AL096803.8|HSBG304P7 Human DNA sequence from clone GS1-304P7... 40 5.0
28emb|AL645527.20| Mouse DNA sequence from clone RP23-26L6 on chro... 40 5.0
29emb|AL008970.3|PFMAL3P4 Plasmodium falciparum MAL3P4 40 5.0
30emb|AJ276505.2|MMU276505 Mus musculus genomic fragment, 281000 b... 40 5.0
31emb|BX511155.25| Zebrafish DNA sequence from clone DKEY-56D18 in... 40 5.0
32emb|BX548054.19| Zebrafish DNA sequence from clone CH211-237N4 i... 40 5.0
33gb|AC068892.7| Homo sapiens chromosome 10 clone RP11-116D21, com... 40 5.0
34gb|AC182764.2| Gallus gallus BAC clone CH261-140B3 from chromoso... 40 5.0
35gb|AC084763.4| Oryza sativa chromosome 10 BAC OSJNBa0027P10 geno... 40 5.0
36dbj|AK086225.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 40 5.0
37dbj|AK086224.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 40 5.0
38gb|AC158635.6| Mus musculus 10 BAC RP23-396A23 (Roswell Park Can... 40 5.0
39dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
40dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
41gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 40 5.0
42gb|AC084659.1|CBRG46N07 Caenorhabditis briggsae cosmid G46N07, c... 40 5.0
43ref|XM_573224.1| PREDICTED: Rattus norvegicus similar to Lethal ... 40 5.0
44gb|AY009938.2| Hordeum vulgare subsp. vulgare MLA1-2 (Mla1-2) ge... 40 5.0
45emb|BX005258.11| Zebrafish DNA sequence from clone DKEY-77I24 in... 40 5.0
46gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
47gb|AC153605.2| Mus musculus 6 BAC RP23-346H23 (Roswell Park Canc... 40 5.0
48dbj|D86600.2| Loligo bleekeri mRNA for voltage-dependent calcium... 40 5.0 
>emb|X52572.1|HVBDG Barley DNA for (1-3,1-4)-beta-D-glucanase (EC 3.2.1.73)
          Length = 6260

 Score =  710 bits (358), Expect = 0.0
 Identities = 373/378 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    atatataggaatattcgggcttcgccgatatatttcatactttattattttggacaaatt 60
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5854 atatataggaatattcggtcttcgccgatatatttcatactttattattttggacaaatt 5795

                                                                        
Query: 61   tcgtcaagttttgacgaaattttgaaccctacaatatagttcctaggtacgcacacatgc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5794 tcgtcaagttttgacgaaattttgaaccctacaatatagttcctaggtacgcacacatgc 5735

                                                                        
Query: 121  gtgtacgtatcaagtgcatgatcaatcgaggaaggggcagcgtttgcatatgcttccctt 180
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5734 gtgtacgtatcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttccctt 5675

                                                                        
Query: 181  ccatcgaaaatcatacgtactggtacactagtatatcaagccactactactcggggacgc 240
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct: 5674 ccatcgaaaatcatacgtactggtacactagtatagcaagccactactactcgcgtacgc 5615

                                                                        
Query: 241  atctgagctgcctcagcggtcgcatcccaagttcccaacccaagccctgtacaatacata 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5614 atctgagctgcctcagcggtcgcatcccaagttcccaacccaagccctgtacaatacata 5555

                                                                        
Query: 301  atgtgcgcatacgtacggcgtacacgctcttatacgcgcgcgcgtacgtacggacatacg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5554 atgtgcgcatacgtacggcgtacacgctcttatacgcgcgcgcgtacgtacggacatacg 5495

                              
Query: 361  ggcactaggtagctgcta 378
            ||||||||||||||||||
Sbjct: 5494 ggcactaggtagctgcta 5477
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>emb|X56260.1|HVGLUEND Barley DNA for (1,3;1,4)-beta-glucanase.(EC number 3.2.1.73)
          Length = 4643

 Score =  682 bits (344), Expect = 0.0
 Identities = 370/378 (97%), Gaps = 3/378 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    atatataggaatattcgggcttcgccgatatatttcatactttattattttggacaaatt 60
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4444 atatataggaatattcggtcttcgccgatatatttcatactttattattttggacaaatt 4385

                                                                        
Query: 61   tcgtcaagttttgacgaaattttgaaccctacaatatagttcctaggtacgcacacatgc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4384 tcgtcaagttttgacgaaattttgaaccctacaatatagttcctaggtacgcacacatgc 4325

                                                                        
Query: 121  gtgtacgtatcaagtgcatgatcaatcgaggaaggggcagcgtttgcatatgcttccctt 180
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4324 gtgtacgtatcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttccctt 4265

                                                                        
Query: 181  ccatcgaaaatcatacgtactggtacactagtatatcaagccactactactcggggacgc 240
            ||||||||||||||||||||||||||||||||||| ||||||   |||||||| | ||||
Sbjct: 4264 ccatcgaaaatcatacgtactggtacactagtatagcaagcc---actactcgcgtacgc 4208

                                                                        
Query: 241  atctgagctgcctcagcggtcgcatcccaagttcccaacccaagccctgtacaatacata 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4207 atctgagctgcctcagcggtcgcatcccaagttcccaacccaagccctgtacaatacata 4148

                                                                        
Query: 301  atgtgcgcatacgtacggcgtacacgctcttatacgcgcgcgcgtacgtacggacatacg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4147 atgtgcgcatacgtacggcgtacacgctcttatacgcgcgcgcgtacgtacggacatacg 4088

                              
Query: 361  ggcactaggtagctgcta 378
            ||||||||||||||||||
Sbjct: 4087 ggcactaggtagctgcta 4070
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>emb|X56775.1|HVGLB1 H.vulgare Glb 1 gene for 1-3,1-4-beta-D-glucanase
          Length = 4849

 Score =  666 bits (336), Expect = 0.0
 Identities = 369/378 (97%), Gaps = 4/378 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    atatataggaatattcgggcttcgccgatatatttcatactttattattttggacaaatt 60
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4843 atatataggaatattcggtcttcgccgatatatttcatactttattattttggacaaatt 4784

                                                                        
Query: 61   tcgtcaagttttgacgaaattttgaaccctacaatatagttcctaggtacgcacacatgc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4783 tcgtcaagttttgacgaaattttgaaccctacaatatagttcctaggtacgcacacatgc 4724

                                                                        
Query: 121  gtgtacgtatcaagtgcatgatcaatcgaggaaggggcagcgtttgcatatgcttccctt 180
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4723 gtgtacgtatcaagtgcatgatcaatcgaggaagggggagcgtttgcatatgcttccctt 4664

                                                                        
Query: 181  ccatcgaaaatcatacgtactggtacactagtatatcaagccactactactcggggacgc 240
            ||||||||||||||||||||||||||||||||||| ||||||||||||   || | ||| 
Sbjct: 4663 ccatcgaaaatcatacgtactggtacactagtatagcaagccactact---cgcgtacg- 4608

                                                                        
Query: 241  atctgagctgcctcagcggtcgcatcccaagttcccaacccaagccctgtacaatacata 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4607 atctgagctgcctcagcggtcgcatcccaagttcccaacccaagccctgtacaatacata 4548

                                                                        
Query: 301  atgtgcgcatacgtacggcgtacacgctcttatacgcgcgcgcgtacgtacggacatacg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4547 atgtgcgcatacgtacggcgtacacgctcttatacgcgcgcgcgtacgtacggacatacg 4488

                              
Query: 361  ggcactaggtagctgcta 378
            ||||||||||||||||||
Sbjct: 4487 ggcactaggtagctgcta 4470
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>emb|Z22873.1|TABETGLUA T.aestivum beta glucanase mRNA, complete CDS
          Length = 1434

 Score =  278 bits (140), Expect = 1e-71
 Identities = 301/353 (85%), Gaps = 25/353 (7%)
 Strand = Plus / Minus

                                                                        
Query: 22   tcgccgatatatttcatactttattattttggacaaatttcgtcaagttttgacgaaatt 81
            ||||||||||||||||||     |||||||||||||||||||||||||||||||||||||
Sbjct: 1397 tcgccgatatatttcata-----ttattttggacaaatttcgtcaagttttgacgaaatt 1343

                                                                        
Query: 82   ttgaaccctacaatatagttcctaggtacgcacacatgcgtgtacgtatcaagtgcatga 141
            |||||||||||||||||||| |||  |||||||||||| |||| |||||||| |||||||
Sbjct: 1342 ttgaaccctacaatatagtt-ctacttacgcacacatgtgtgtgcgtatcaaatgcatga 1284

                                                                        
Query: 142  tcaatcgaggaaggggcagcgtttgcatatgcttcccttccatcgaaaatcatacgtact 201
            | |||||| ||||||  ||||||| ||| |||  ||||||||||| |||||||||  |  
Sbjct: 1283 tgaatcgacgaagggagagcgtttacatctgccccccttccatcgtaaatcatacaca-- 1226

                                                                        
Query: 202  ggtacactagtatatcaagccactactactcggggacgcatctgagctgcctcagcggtc 261
              ||||||| |||| ||| ||||||||| ||| | |||| ||||||||||||||||||||
Sbjct: 1225 --tacactactatagcaaaccactacta-tcgcgtacgcgtctgagctgcctcagcggtc 1169

                                                                        
Query: 262  gcatcccaagttcccaacccaagccctgtacaatacataatgtgcgcatacgtacggcgt 321
            ||| |        |||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 1168 gcacc--------ccaacccaagccctgtacaatacataatgtgcacatacgtacggcat 1117

                                                                 
Query: 322  acacgctcttatacg------cgcgcgcgtacgtacggacatacgggcactag 368
            |||||||||||||||      |||||||||||| |||||||||||| ||||||
Sbjct: 1116 acacgctcttatacgcgtgtacgcgcgcgtacggacggacatacggacactag 1064
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>emb|Z22874.1|TABETGLUB T.aestivum (1,3;1,4) beta glucanase mRNA, complete CDS
          Length = 1426

 Score =  262 bits (132), Expect = 7e-67
 Identities = 299/353 (84%), Gaps = 25/353 (7%)
 Strand = Plus / Minus

                                                                        
Query: 22   tcgccgatatatttcatactttattattttggacaaatttcgtcaagttttgacgaaatt 81
            ||||||||||||||||||     |||||||||||||||| |||||| |||||||||||||
Sbjct: 1411 tcgccgatatatttcata-----ttattttggacaaattccgtcaaattttgacgaaatt 1357

                                                                        
Query: 82   ttgaaccctacaatatagttcctaggtacgcacacatgcgtgtacgtatcaagtgcatga 141
            |||||||||||||||||||| |||  |||||||||||| ||||||||||||| || ||||
Sbjct: 1356 ttgaaccctacaatatagtt-ctacttacgcacacatgtgtgtacgtatcaaatgtatga 1298

                                                                        
Query: 142  tcaatcgaggaaggggcagcgtttgcatatgcttcccttccatcgaaaatcatacgtact 201
            | |||||| ||||||  ||||||| ||| |||||||||||||||| |||||||||  |  
Sbjct: 1297 tgaatcgacgaagggagagcgtttacatctgcttcccttccatcgtaaatcatacaca-- 1240

                                                                        
Query: 202  ggtacactagtatatcaagccactactactcggggacgcatctgagctgcctcagcggtc 261
              ||||||| || | ||| ||||||||| | | | |||||||||||||||||||||||||
Sbjct: 1239 --tacactactacagcaaaccactacta-tagcgtacgcatctgagctgcctcagcggtc 1183

                                                                        
Query: 262  gcatcccaagttcccaacccaagccctgtacaatacataatgtgcgcatacgtacggcgt 321
            ||| |        ||||||||| |||||||||||||||||||||| ||||||||| || |
Sbjct: 1182 gcacc--------ccaacccaaaccctgtacaatacataatgtgcacatacgtaccgcat 1131

                                                                 
Query: 322  acacgctcttatacg------cgcgcgcgtacgtacggacatacgggcactag 368
            |||||||||||||||      ||||||||||||||||||||||||| ||||||
Sbjct: 1130 acacgctcttatacgcgtgtacgcgcgcgtacgtacggacatacggacactag 1078
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>emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase
          Length = 1448

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 39/42 (92%), Gaps = 1/42 (2%)
 Strand = Plus / Minus

                                                      
Query: 296  acataatgtgcgcatacgtacggcgtacacgctcttatacgc 337
            ||||||||||| ||||||||| |||||||||| |||||||||
Sbjct: 1139 acataatgtgcacatacgtac-gcgtacacgcccttatacgc 1099
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>gb|AF241159.1| Trypanosoma cruzi clone FGz 73 kinetoplast minicircle DNA, partial
           sequence
          Length = 322

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 65  caagttttgacgaaattttgaacccta 91
           |||||||| ||||||||||||||||||
Sbjct: 263 caagttttcacgaaattttgaacccta 237
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>emb|AL355303.16| Human DNA sequence from clone RP11-445P17 on chromosome 10 Contains the
             5' end of the gene for a novel protein similar to
             aldo-keto reductase, the AKR1C4 gene for aldo-keto
             reductase family 1 member C4, a novel gene, an aldo-keto
             reductase pseudogene, a ribosomal protein L26 (RPL26)
             pseudogene, an ADP-ribosylation factor-like 4 (ARL4)
             pseudogene,. a novel gene and a CpG island, complete
             sequence
          Length = 145692

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 30    atatttcatactttattatttt 51
             ||||||||||||||||||||||
Sbjct: 71075 atatttcatactttattatttt 71054
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>gb|AC127354.4| Mus musculus BAC clone RP23-91C8 from chromosome 6, complete sequence
          Length = 197318

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 78     aattttgaaccctacaatata 98
              |||||||||||||||||||||
Sbjct: 195991 aattttgaaccctacaatata 196011
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>gb|AC022675.7| Mus musculus chromosome 1, clone RP23-59N15, complete sequence
          Length = 181063

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 292   caatacataatgtgcgcatac 312
             |||||||||||||||||||||
Sbjct: 45217 caatacataatgtgcgcatac 45237
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>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007B15 map S10318, complete sequence
          Length = 125243

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 263   catcccaagttcccaacccaa 283
             |||||||||||||||||||||
Sbjct: 25470 catcccaagttcccaacccaa 25490
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>gb|AC132955.3| Mus musculus BAC clone RP24-266J20 from chromosome 6, complete sequence
          Length = 174507

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 78     aattttgaaccctacaatata 98
              |||||||||||||||||||||
Sbjct: 159500 aattttgaaccctacaatata 159480
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 31       tatttcatactttattatttt 51
                |||||||||||||||||||||
Sbjct: 25532465 tatttcatactttattatttt 25532485
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 263     catcccaagttcccaacccaa 283
               |||||||||||||||||||||
Sbjct: 3431515 catcccaagttcccaacccaa 3431535
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>gb|AF433637.1| Oryza sativa clone OsMu10-1 transposon Mu-like repeat region
          Length = 1143

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 263 catcccaagttcccaacccaa 283
           |||||||||||||||||||||
Sbjct: 825 catcccaagttcccaacccaa 805
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 263     catcccaagttcccaacccaa 283
               |||||||||||||||||||||
Sbjct: 3440219 catcccaagttcccaacccaa 3440239
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 31       tatttcatactttattatttt 51
                |||||||||||||||||||||
Sbjct: 25460641 tatttcatactttattatttt 25460661
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>emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC OSJNBa0070E09 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 144084

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 31     tatttcatactttattatttt 51
              |||||||||||||||||||||
Sbjct: 101847 tatttcatactttattatttt 101867
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>emb|AL365314.16| Mouse DNA sequence from clone RP23-106N23 on chromosome 1, complete
              sequence
          Length = 182054

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 292    caatacataatgtgcgcatac 312
              |||||||||||||||||||||
Sbjct: 176184 caatacataatgtgcgcatac 176164
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>gb|AC164981.2| Mus musculus BAC clone RP23-121F5 from chromosome 17, complete sequence
          Length = 243701

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     tatatttcatactttattat 48
              ||||||||||||||||||||
Sbjct: 236227 tatatttcatactttattat 236246
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>gb|AC132446.3| Mus musculus BAC clone RP23-175K4 from chromosome 12, complete sequence
          Length = 190088

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    actttattattttggacaaa 58
             ||||||||||||||||||||
Sbjct: 57061 actttattattttggacaaa 57042
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>gb|AC068006.10| Mus musculus chromosome 7, clone RP23-6I17, complete sequence
          Length = 203141

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   ccaagttcccaacccaagcc 286
             ||||||||||||||||||||
Sbjct: 97502 ccaagttcccaacccaagcc 97521
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 265      tcccaagttcccaacccaag 284
                ||||||||||||||||||||
Sbjct: 34127748 tcccaagttcccaacccaag 34127729
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>gb|AC113476.20| Mus musculus chromosome 17, clone RP23-304J1, complete sequence
          Length = 227026

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     tatatttcatactttattat 48
              ||||||||||||||||||||
Sbjct: 170499 tatatttcatactttattat 170480
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>gb|AC108477.5| Homo sapiens BAC clone RP11-499F19 from 4, complete sequence
          Length = 164194

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    accctacaatatagttccta 105
             ||||||||||||||||||||
Sbjct: 94347 accctacaatatagttccta 94366
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>emb|CR383660.9| Zebrafish DNA sequence from clone DKEY-1H22 in linkage group 14,
             complete sequence
          Length = 139631

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    tttcatactttattattttg 52
             ||||||||||||||||||||
Sbjct: 38431 tttcatactttattattttg 38450
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>emb|AL096803.8|HSBG304P7 Human DNA sequence from clone GS1-304P7 on chromosome 1q25.1-31.1
              Contains a zinc-finger protein pseudogene and a novel
              pseudogene, complete sequence
          Length = 129723

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    tcccaagttcccaacccaag 284
              ||||||||||||||||||||
Sbjct: 114305 tcccaagttcccaacccaag 114324
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>emb|AL645527.20| Mouse DNA sequence from clone RP23-26L6 on chromosome 11 Contains the
              Vamp2 gene for vesicle-associated membrane 2, the Per1 gene
              for period homolog 1 (Drosophila), the Hes7 gene for hairy
              and enhancer of split 7 (Drosophila), the Aloxe3 gene for
              arachidonate lipoxygenase 3, the Alox12b gene for
              arachidonate 12-lipoxygenase 12R type, the Alox15b gene for
              arachidonate 15-lipoxygenase second type, the Gucy2e gene
              for guanylate cyclase 2e, a novel gene, the gene for
              LYST-interacting protein LIP8 (Lip8-pending), the gene for
              the likely ortholog of H. sapiens trafficking protein
              particle complex 1 (TRAPPC1)), the Kcnab3 gene for
              potassium voltage-gated channel shaker-related subfamily
              beta member 3, a novel gene, the 3' end of the Chd3 gene
              for chromodomain helicase DNA binding protein 3 and six CpG
              islands, complete sequence
          Length = 261224

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     aaccctacaatatagttcct 104
              ||||||||||||||||||||
Sbjct: 121051 aaccctacaatatagttcct 121070
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>emb|AL008970.3|PFMAL3P4 Plasmodium falciparum MAL3P4
          Length = 113880

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 31   tatttcatactttattattt 50
            ||||||||||||||||||||
Sbjct: 2518 tatttcatactttattattt 2537
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>emb|AJ276505.2|MMU276505 Mus musculus genomic fragment, 281000 bp, chromosome 7
          Length = 281000

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    ccaagttcccaacccaagcc 286
              ||||||||||||||||||||
Sbjct: 125367 ccaagttcccaacccaagcc 125348
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>emb|BX511155.25| Zebrafish DNA sequence from clone DKEY-56D18 in linkage group 19,
              complete sequence
          Length = 205235

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     atttcatactttattatttt 51
              ||||||||||||||||||||
Sbjct: 190045 atttcatactttattatttt 190026
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>emb|BX548054.19| Zebrafish DNA sequence from clone CH211-237N4 in linkage group 14,
             complete sequence
          Length = 128658

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    tttcatactttattattttg 52
             ||||||||||||||||||||
Sbjct: 79505 tttcatactttattattttg 79486
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>gb|AC068892.7| Homo sapiens chromosome 10 clone RP11-116D21, complete sequence
          Length = 161178

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 44    attattttggacaaatttcgtcaa 67
             ||||||||||||||||||| ||||
Sbjct: 22782 attattttggacaaatttcctcaa 22805
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>gb|AC182764.2| Gallus gallus BAC clone CH261-140B3 from chromosome 1, complete sequence
          Length = 192460

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 151    gaaggggcagcgtttgcatatgct 174
              ||||||||||||||||||| ||||
Sbjct: 149331 gaaggggcagcgtttgcatgtgct 149354
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>gb|AC084763.4| Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete
             sequence
          Length = 141307

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   catcccaagttcccaaccca 282
             ||||||||||||||||||||
Sbjct: 31976 catcccaagttcccaaccca 31957
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>dbj|AK086225.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
           library, clone:D930014O14 product:unclassifiable, full
           insert sequence
          Length = 2796

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 30  atatttcatactttattatt 49
           ||||||||||||||||||||
Sbjct: 596 atatttcatactttattatt 577
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>dbj|AK086224.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
           library, clone:D930014O13 product:unclassifiable, full
           insert sequence
          Length = 2795

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 30  atatttcatactttattatt 49
           ||||||||||||||||||||
Sbjct: 596 atatttcatactttattatt 577
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>gb|AC158635.6| Mus musculus 10 BAC RP23-396A23 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 183931

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    ctttattattttggacaaat 59
             ||||||||||||||||||||
Sbjct: 86054 ctttattattttggacaaat 86035
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 263      catcccaagttcccaaccca 282
                ||||||||||||||||||||
Sbjct: 21717293 catcccaagttcccaaccca 21717274
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 265      tcccaagttcccaacccaag 284
                ||||||||||||||||||||
Sbjct: 34218220 tcccaagttcccaacccaag 34218201
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>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
             sequence
          Length = 163828

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   tcccaagttcccaacccaag 284
             ||||||||||||||||||||
Sbjct: 91560 tcccaagttcccaacccaag 91541
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>gb|AC084659.1|CBRG46N07 Caenorhabditis briggsae cosmid G46N07, complete sequence
          Length = 13350

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 29   tatatttcatactttattattttg 52
            ||||||||||||||| ||||||||
Sbjct: 990  tatatttcatactttgttattttg 1013
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>ref|XM_573224.1| PREDICTED: Rattus norvegicus similar to Lethal giant larvae homolog
           2 (LOC360661), mRNA
          Length = 8565

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 agctgcctcagcggtcgcat 265
           ||||||||||||||||||||
Sbjct: 773 agctgcctcagcggtcgcat 792
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>gb|AY009938.2| Hordeum vulgare subsp. vulgare MLA1-2 (Mla1-2) gene, partial cds; and
            MLA1 (Mla1) gene, complete cds
          Length = 18958

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 28   atatatttcatactttatta 47
            ||||||||||||||||||||
Sbjct: 6352 atatatttcatactttatta 6371
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>emb|BX005258.11| Zebrafish DNA sequence from clone DKEY-77I24 in linkage group 17,
              complete sequence
          Length = 193078

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 78     aattttgaaccctacaatatagtt 101
              |||||||||||||||||| |||||
Sbjct: 114656 aattttgaaccctacaatgtagtt 114679
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 263      catcccaagttcccaaccca 282
                ||||||||||||||||||||
Sbjct: 21728956 catcccaagttcccaaccca 21728937
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>gb|AC153605.2| Mus musculus 6 BAC RP23-346H23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 229744

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     atatttcatactttattatt 49
              ||||||||||||||||||||
Sbjct: 129452 atatttcatactttattatt 129471
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>dbj|D86600.2| Loligo bleekeri mRNA for voltage-dependent calcium channel, complete
            cds
          Length = 7113

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   ttcatactttattattttgg 53
            ||||||||||||||||||||
Sbjct: 2386 ttcatactttattattttgg 2405


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,547,239
Number of Sequences: 3902068
Number of extensions: 2547239
Number of successful extensions: 44948
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 44725
Number of HSP's gapped (non-prelim): 219
length of query: 378
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 356
effective length of database: 17,147,199,772
effective search space: 6104403118832
effective search space used: 6104403118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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