ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart55a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
2dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
3gb|AY109729.1| Zea mays CL17488_1 mRNA sequence 115 1e-22
4emb|AL607148.8| Human DNA sequence from clone RP11-147D24 on chr... 50 0.007
5dbj|AK059480.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.028
6ref|XM_482600.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.43
7gb|AC068721.4| Homo sapiens BAC clone RP11-545L5 from 4, complet... 44 0.43
8gb|AC115026.16| Mus musculus chromosome 1, clone RP24-238A19, co... 42 1.7
9gb|AC114629.12| Mus musculus chromosome 1, clone RP24-111F20, co... 42 1.7
10gb|AC005601.1| Homo sapiens chromosome 5, BAC clone 343g16 (LBNL... 42 1.7
11gb|AC163484.4| Mus musculus chromosome 1, clone RP23-432C4, comp... 42 1.7
12emb|CR450771.10| Zebrafish DNA sequence from clone CH211-152D1 i... 42 1.7
13emb|BX957298.9| Zebrafish DNA sequence from clone CH211-268H1 in... 42 1.7
14gb|AY436590.1| Homo sapiens nuclear receptor subfamily 3, group ... 42 1.7
15emb|AL354815.10| Human DNA sequence from clone RP11-760M1 on chr... 42 1.7
16emb|BX883045.1| Rattus norvegicus chromosome 20, major histocomp... 42 1.7
17gb|AC091925.3| Homo sapiens chromosome 5 clone RP11-278J6, compl... 42 1.7
18gb|AC012634.8| Homo sapiens chromosome 5 clone CTD-2185H17, comp... 42 1.7
19gb|AY956813.1| Euprymna scolopes peptidoglycan recognition prote... 40 6.8
20ref|NM_101454.1| Arabidopsis thaliana unknown protein AT1G15860 ... 40 6.8
21gb|AC132489.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
22gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 40 6.8
23gb|AC115777.16| Mus musculus chromosome 6, clone RP23-139O6, com... 40 6.8
24gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 40 6.8
25gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 40 6.8
26gb|AC134524.5| Mus musculus BAC clone RP24-496E20 from chromosom... 40 6.8
27emb|CR450764.3| Zebrafish DNA sequence from clone CH211-209F22 i... 40 6.8
28gb|AC129591.4| Mus musculus BAC clone RP24-510A3 from chromosome... 40 6.8
29gb|AC127268.2| Mus musculus BAC clone RP23-426K20 from chromosom... 40 6.8
30gb|CP000001.1| Bacillus cereus E33L, complete genome 40 6.8
31emb|CR352294.7| Zebrafish DNA sequence from clone CH211-188C24 i... 40 6.8
32emb|BX908755.10| Zebrafish DNA sequence from clone DKEY-67F11 in... 40 6.8
33emb|AL592285.7| Human DNA sequence from clone RP11-153I22 on chr... 40 6.8
34emb|AL451127.6| Human DNA sequence from clone RP11-128I7 on chro... 40 6.8
35emb|AL449264.18| Human DNA sequence from clone RP11-485H8 on chr... 40 6.8
36gb|AC117509.9| Homo sapiens 3 BAC RP11-31B16 (Roswell Park Cance... 40 6.8
37gb|BT009700.1| Arabidopsis thaliana At1g15860 gene, complete cds 40 6.8
38emb|CR382288.10| Zebrafish DNA sequence from clone CH211-234C14 ... 40 6.8
39emb|AL772144.4| Zebrafish DNA sequence from clone CH211-164J3 in... 40 6.8
40emb|BX000471.7| Zebrafish DNA sequence from clone DKEY-11C8 in l... 40 6.8
41emb|BX511068.5| Zebrafish DNA sequence from clone RP71-56H12 in ... 40 6.8
42dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 40 6.8
43emb|BX470070.27| Zebrafish DNA sequence from clone CH211-194B21 ... 40 6.8
44emb|BX248234.13| Zebrafish DNA sequence from clone DKEY-13E15 in... 40 6.8
45emb|BX569789.4| Zebrafish DNA sequence from clone DKEY-68O6 in l... 40 6.8
46emb|BX000463.19| Zebrafish DNA sequence from clone CH211-266I2, ... 40 6.8
47dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
48emb|BX005061.9| Zebrafish DNA sequence from clone CH211-158F5 in... 40 6.8
49emb|BX813850.1|CNS0AC2O Arabidopsis thaliana Full-length cDNA Co... 40 6.8
50gb|AC154003.4| Mus musculus 6 BAC RP24-92L16 (Roswell Park Cance... 40 6.8
51gb|AC154767.2| Mus musculus BAC clone RP23-105P19 from chromosom... 40 6.8
52emb|BX072574.7| Zebrafish DNA sequence from clone DKEY-27P21 in ... 40 6.8
53emb|BX119982.8| Zebrafish DNA sequence from clone CH211-214J4 in... 40 6.8
54emb|BX005215.13| Mouse DNA sequence from clone RP23-280F9 on chr... 40 6.8
55emb|BX005335.9| Zebrafish DNA sequence from clone DKEY-240N8, co... 40 6.8
56dbj|AK111524.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.8
57dbj|AK104927.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.8
58emb|BX927293.15| Zebrafish DNA sequence from clone DKEY-95H12 in... 40 6.8
59emb|CR356233.12| Zebrafish DNA sequence from clone CH211-262N1, ... 40 6.8
60emb|BX119988.9| Zebrafish DNA sequence from clone CH211-184L6 in... 40 6.8
61dbj|AB021170.1| Candida albicans gene for alpha subunit of geran... 40 6.8
62gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 6.8
63gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 40 6.8
64gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 40 6.8
65emb|AL935115.6| Zebrafish DNA sequence from clone CH211-199D18, ... 40 6.8
66emb|CR450797.9| Zebrafish DNA sequence from clone CH211-80B12 in... 40 6.8
67emb|BX255908.4| Zebrafish DNA sequence from clone CH211-250O16 i... 40 6.8
68gb|AY953371.1| Brevibacillus texasporus strain ATCC PTA-5854 non... 40 6.8
69gb|AC170870.2| Mus musculus BAC clone RP24-303O21 from chromosom... 40 6.8 
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  127 bits (64), Expect = 4e-26
 Identities = 112/128 (87%)
 Strand = Plus / Minus

                                                                            
Query: 331      catcttcaccaccactcgagtacaagagggctaattttcatttgctcttaaccattcaac 390
                ||||||||||| |||| || || ||||| ||||| ||| |||| ||| ||||||||||||
Sbjct: 21352491 catcttcaccagcacttgaataaaagagagctaacttttattttctcgtaaccattcaac 21352432

                                                                            
Query: 391      aaaattgtctaaaattaaaggccaagcttggtctgcatcgtaattgtcaagtgatgggaa 450
                ||||||||| ||||| | |||||||||  |||||| ||| ||||||||||||||||||||
Sbjct: 21352431 aaaattgtccaaaataagaggccaagcaaggtctgaatcataattgtcaagtgatgggaa 21352372

                        
Query: 451      gtttatct 458
                ||||||||
Sbjct: 21352371 gtttatct 21352364



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                            
Query: 457      ctcattgcagaaccgaagaaatcccatccattgatccatgttta 500
                |||||||||||| |||||||| |||||||| || ||||||||||
Sbjct: 21352227 ctcattgcagaaacgaagaaagcccatccactggtccatgttta 21352184
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>dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0524F03
          Length = 167696

 Score =  127 bits (64), Expect = 4e-26
 Identities = 112/128 (87%)
 Strand = Plus / Minus

                                                                         
Query: 331   catcttcaccaccactcgagtacaagagggctaattttcatttgctcttaaccattcaac 390
             ||||||||||| |||| || || ||||| ||||| ||| |||| ||| ||||||||||||
Sbjct: 52416 catcttcaccagcacttgaataaaagagagctaacttttattttctcgtaaccattcaac 52357

                                                                         
Query: 391   aaaattgtctaaaattaaaggccaagcttggtctgcatcgtaattgtcaagtgatgggaa 450
             ||||||||| ||||| | |||||||||  |||||| ||| ||||||||||||||||||||
Sbjct: 52356 aaaattgtccaaaataagaggccaagcaaggtctgaatcataattgtcaagtgatgggaa 52297

                     
Query: 451   gtttatct 458
             ||||||||
Sbjct: 52296 gtttatct 52289



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                         
Query: 457   ctcattgcagaaccgaagaaatcccatccattgatccatgttta 500
             |||||||||||| |||||||| |||||||| || ||||||||||
Sbjct: 52152 ctcattgcagaaacgaagaaagcccatccactggtccatgttta 52109
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>gb|AY109729.1| Zea mays CL17488_1 mRNA sequence
          Length = 911

 Score =  115 bits (58), Expect = 1e-22
 Identities = 97/110 (88%)
 Strand = Plus / Plus

                                                                       
Query: 386 tcaacaaaattgtctaaaattaaaggccaagcttggtctgcatcgtaattgtcaagtgat 445
           |||||||||||||||| ||| |||||||| ||  |||||| ||| ||||||||||| |||
Sbjct: 155 tcaacaaaattgtctagaatcaaaggccaggcaaggtctgaatcataattgtcaagcgat 214

                                                             
Query: 446 gggaagtttatctcattgcagaaccgaagaaatcccatccattgatccat 495
           ||||||||||||||||| ||||| |||| |||||||||||| || |||||
Sbjct: 215 gggaagtttatctcattacagaaacgaataaatcccatccactggtccat 264
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>emb|AL607148.8| Human DNA sequence from clone RP11-147D24 on chromosome 13, complete
            sequence
          Length = 81848

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 177  ctgctaagtgtttcaagtattaaaa 201
            |||||||||||||||||||||||||
Sbjct: 8588 ctgctaagtgtttcaagtattaaaa 8564
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>dbj|AK059480.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-F04, full
           insert sequence
          Length = 527

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 331 catcttcaccaccactcgagtacaagagggctaattttcatttgctcttaaccattcaac 390
           ||||||||||| |||| || || ||||| ||||| ||| |||| ||| ||||||||||||
Sbjct: 60  catcttcaccagcacttgaataaaagagagctaacttttattttctcgtaaccattcaac 1
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>ref|XM_482600.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 306

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 437 tcaagtgatgggaagtttatct 458
           ||||||||||||||||||||||
Sbjct: 306 tcaagtgatgggaagtttatct 285
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>gb|AC068721.4| Homo sapiens BAC clone RP11-545L5 from 4, complete sequence
          Length = 177270

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 392   aaattgtctaaaattaaaggccaagc 417
             |||||||| |||||||||||||||||
Sbjct: 64523 aaattgtcaaaaattaaaggccaagc 64548
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>gb|AC115026.16| Mus musculus chromosome 1, clone RP24-238A19, complete sequence
          Length = 191726

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 286   ctccaaaattctccaaggtgatttctgag 314
             ||||||||| ||| |||||||||||||||
Sbjct: 56593 ctccaaaatcctcaaaggtgatttctgag 56621
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>gb|AC114629.12| Mus musculus chromosome 1, clone RP24-111F20, complete sequence
          Length = 178437

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 286    ctccaaaattctccaaggtgatttctgag 314
              ||||||||| ||| |||||||||||||||
Sbjct: 161932 ctccaaaatcctcaaaggtgatttctgag 161960
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>gb|AC005601.1| Homo sapiens chromosome 5, BAC clone 343g16 (LBNL H180), complete
             sequence
          Length = 38413

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 59    atgccaacatgttcatttaagactt 83
             ||||||| |||||||||||||||||
Sbjct: 27991 atgccaatatgttcatttaagactt 27967
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>gb|AC163484.4| Mus musculus chromosome 1, clone RP23-432C4, complete sequence
          Length = 193216

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 286    ctccaaaattctccaaggtgatttctgag 314
              ||||||||| ||| |||||||||||||||
Sbjct: 186892 ctccaaaatcctcaaaggtgatttctgag 186864
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>emb|CR450771.10| Zebrafish DNA sequence from clone CH211-152D1 in linkage group 2,
             complete sequence
          Length = 152893

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 195   attaaaaagtgaaaagcaaac 215
             |||||||||||||||||||||
Sbjct: 93275 attaaaaagtgaaaagcaaac 93255
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>emb|BX957298.9| Zebrafish DNA sequence from clone CH211-268H1 in linkage group 21,
              complete sequence
          Length = 140969

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 190    caagtattaaaaagtgaaaag 210
              |||||||||||||||||||||
Sbjct: 100468 caagtattaaaaagtgaaaag 100448
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>gb|AY436590.1| Homo sapiens nuclear receptor subfamily 3, group C, member 1
             (glucocorticoid receptor) (NR3C1) gene, complete cds
          Length = 127687

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 59    atgccaacatgttcatttaagactt 83
             ||||||| |||||||||||||||||
Sbjct: 78838 atgccaatatgttcatttaagactt 78862
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>emb|AL354815.10| Human DNA sequence from clone RP11-760M1 on chromosome 13 Contains three
              novel genes, the 5' end of the TNFRSF19 gene for tumour
              necrosis factor receptor superfamily member 19 and two CpG
              islands, complete sequence
          Length = 168663

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 195    attaaaaagtgaaaagcaaac 215
              |||||||||||||||||||||
Sbjct: 131370 attaaaaagtgaaaagcaaac 131350
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>emb|BX883045.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 4/11
          Length = 346406

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 368    tcatttgctcttaaccattca 388
              |||||||||||||||||||||
Sbjct: 174620 tcatttgctcttaaccattca 174640
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>gb|AC091925.3| Homo sapiens chromosome 5 clone RP11-278J6, complete sequence
          Length = 164668

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 59    atgccaacatgttcatttaagactt 83
             ||||||| |||||||||||||||||
Sbjct: 44247 atgccaatatgttcatttaagactt 44223
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>gb|AC012634.8| Homo sapiens chromosome 5 clone CTD-2185H17, complete sequence
          Length = 237712

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 59    atgccaacatgttcatttaagactt 83
             ||||||| |||||||||||||||||
Sbjct: 56683 atgccaatatgttcatttaagactt 56707
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>gb|AY956813.1| Euprymna scolopes peptidoglycan recognition protein 3 precursor
            (PGRP3) mRNA, complete cds
          Length = 2154

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 134  tacaaatatagagaatgtcgacat 157
            |||| |||||||||||||||||||
Sbjct: 1322 tacagatatagagaatgtcgacat 1345
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>ref|NM_101454.1| Arabidopsis thaliana unknown protein AT1G15860 mRNA, complete cds
          Length = 869

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 453 ttatctcattgcagaaccgaagaaatcccatccattgatccatgttta 500
           ||||||| || ||||||||   || |||||||||||| ||||||||||
Sbjct: 586 ttatctcgttacagaaccggtaaagtcccatccattggtccatgttta 539
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>gb|AC132489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0537C11,
              complete sequence
          Length = 146677

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 331    catcttcaccaccactcgag 350
              ||||||||||||||||||||
Sbjct: 124810 catcttcaccaccactcgag 124791
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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 191     aagtattaaaaagtgaaaag 210
               ||||||||||||||||||||
Sbjct: 4671432 aagtattaaaaagtgaaaag 4671413
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>gb|AC115777.16| Mus musculus chromosome 6, clone RP23-139O6, complete sequence
          Length = 216399

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     ctcaggatatgggataggcc 35
              ||||||||||||||||||||
Sbjct: 171615 ctcaggatatgggataggcc 171596
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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 191     aagtattaaaaagtgaaaag 210
               ||||||||||||||||||||
Sbjct: 4666179 aagtattaaaaagtgaaaag 4666160
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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 191     aagtattaaaaagtgaaaag 210
               ||||||||||||||||||||
Sbjct: 4667276 aagtattaaaaagtgaaaag 4667257
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>gb|AC134524.5| Mus musculus BAC clone RP24-496E20 from chromosome Y, complete sequence
          Length = 157055

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   catttagattgcatcttcac 339
             ||||||||||||||||||||
Sbjct: 37175 catttagattgcatcttcac 37156
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>emb|CR450764.3| Zebrafish DNA sequence from clone CH211-209F22 in linkage group 11,
              complete sequence
          Length = 152815

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    tcaagtattaaaaagtgaaa 208
              ||||||||||||||||||||
Sbjct: 128418 tcaagtattaaaaagtgaaa 128437
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>gb|AC129591.4| Mus musculus BAC clone RP24-510A3 from chromosome 14, complete sequence
          Length = 176214

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    acaggcaagagaagaacaac 56
             ||||||||||||||||||||
Sbjct: 86248 acaggcaagagaagaacaac 86267
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>gb|AC127268.2| Mus musculus BAC clone RP23-426K20 from chromosome 3, complete sequence
          Length = 182377

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    attaaaaagtgaaaagcaaa 214
              ||||||||||||||||||||
Sbjct: 131632 attaaaaagtgaaaagcaaa 131613
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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 191     aagtattaaaaagtgaaaag 210
               ||||||||||||||||||||
Sbjct: 4737414 aagtattaaaaagtgaaaag 4737395
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>emb|CR352294.7| Zebrafish DNA sequence from clone CH211-188C24 in linkage group 23,
             complete sequence
          Length = 146924

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   caagtattaaaaagtgaaaa 209
             ||||||||||||||||||||
Sbjct: 20751 caagtattaaaaagtgaaaa 20732
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>emb|BX908755.10| Zebrafish DNA sequence from clone DKEY-67F11 in linkage group 3, complete
              sequence
          Length = 160005

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 190    caagtattaaaaagtgaaaa 209
              ||||||||||||||||||||
Sbjct: 148585 caagtattaaaaagtgaaaa 148566
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>emb|AL592285.7| Human DNA sequence from clone RP11-153I22 on chromosome 1 Contains part
              of the PDE4B gene for phosphodiesterase 4B, cAMP-specific
              (phosphodiesterase E4 dunce homolog, Drosophila), complete
              sequence
          Length = 152113

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    atcctccaaaattctccaag 302
              ||||||||||||||||||||
Sbjct: 143371 atcctccaaaattctccaag 143352
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>emb|AL451127.6| Human DNA sequence from clone RP11-128I7 on chromosome 9 Contains a
            novel gene, complete sequence
          Length = 108958

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 391  aaaattgtctaaaattaaag 410
            ||||||||||||||||||||
Sbjct: 4110 aaaattgtctaaaattaaag 4129
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>emb|AL449264.18| Human DNA sequence from clone RP11-485H8 on chromosome 1 Contains the
             5' end of the CASQ2 gene for calsequestrin 2 (cardiac
             muscle), the NHLH2 gene for nescient helix loop helix 2, a
             heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)
             pseudogene and two CpG islands, complete sequence
          Length = 164655

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 197   taaaaagtgaaaagcaaactacaa 220
             ||||||||||||| ||||||||||
Sbjct: 88965 taaaaagtgaaaaacaaactacaa 88988
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>gb|AC117509.9| Homo sapiens 3 BAC RP11-31B16 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 113201

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  cttgatctgcatcctccaaa 292
            ||||||||||||||||||||
Sbjct: 5048 cttgatctgcatcctccaaa 5029
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>gb|BT009700.1| Arabidopsis thaliana At1g15860 gene, complete cds
          Length = 684

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 453 ttatctcattgcagaaccgaagaaatcccatccattgatccatgttta 500
           ||||||| || ||||||||   || |||||||||||| ||||||||||
Sbjct: 592 ttatctcgttacagaaccggtaaagtcccatccattggtccatgttta 545
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>emb|CR382288.10| Zebrafish DNA sequence from clone CH211-234C14 in linkage group 25,
              complete sequence
          Length = 146063

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    caagtattaaaaagtgaaaa 209
              ||||||||||||||||||||
Sbjct: 105466 caagtattaaaaagtgaaaa 105485
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>emb|AL772144.4| Zebrafish DNA sequence from clone CH211-164J3 in linkage group 3
             Contains three CpG islands, complete sequence
          Length = 153837

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   caagtattaaaaagtgaaaa 209
             ||||||||||||||||||||
Sbjct: 30542 caagtattaaaaagtgaaaa 30523
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>emb|BX000471.7| Zebrafish DNA sequence from clone DKEY-11C8 in linkage group 20
             Contains the gene for a novel protein similar to human
             transmembrane protein SHREW1 (SHREW1) and three CpG
             islands, complete sequence
          Length = 227892

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   tcaagtattaaaaagtgaaa 208
             ||||||||||||||||||||
Sbjct: 74925 tcaagtattaaaaagtgaaa 74944
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>emb|BX511068.5| Zebrafish DNA sequence from clone RP71-56H12 in linkage group 8,
             complete sequence
          Length = 108031

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   tcaagtattaaaaagtgaaa 208
             ||||||||||||||||||||
Sbjct: 16735 tcaagtattaaaaagtgaaa 16716
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>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence
          Length = 1877212

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 325     agattgcatcttcaccacca 344
               ||||||||||||||||||||
Sbjct: 1254630 agattgcatcttcaccacca 1254649
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>emb|BX470070.27| Zebrafish DNA sequence from clone CH211-194B21 in linkage group 15,
             complete sequence
          Length = 228177

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 367   ttcatttgctcttaaccattcaacaaaattgt 398
             |||||||||||| ||||| |||| ||||||||
Sbjct: 94514 ttcatttgctctcaaccaatcaaaaaaattgt 94483
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>emb|BX248234.13| Zebrafish DNA sequence from clone DKEY-13E15 in linkage group 16,
              complete sequence
          Length = 220538

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 391    aaaattgtctaaaattaaag 410
              ||||||||||||||||||||
Sbjct: 164522 aaaattgtctaaaattaaag 164541
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>emb|BX569789.4| Zebrafish DNA sequence from clone DKEY-68O6 in linkage group 3, complete
              sequence
          Length = 244662

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    tcaagtattaaaaagtgaaa 208
              ||||||||||||||||||||
Sbjct: 171324 tcaagtattaaaaagtgaaa 171305
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>emb|BX000463.19| Zebrafish DNA sequence from clone CH211-266I2, complete sequence
          Length = 164682

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   tcaagtattaaaaagtgaaa 208
             ||||||||||||||||||||
Sbjct: 66460 tcaagtattaaaaagtgaaa 66479
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 331     catcttcaccaccactcgag 350
               ||||||||||||||||||||
Sbjct: 9352865 catcttcaccaccactcgag 9352846
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>emb|BX005061.9| Zebrafish DNA sequence from clone CH211-158F5 in linkage group 5,
              complete sequence
          Length = 155854

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    tcaagtattaaaaagtgaaa 208
              ||||||||||||||||||||
Sbjct: 141421 tcaagtattaaaaagtgaaa 141402
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>emb|BX813850.1|CNS0AC2O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB42ZG10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 890

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 453 ttatctcattgcagaaccgaagaaatcccatccattgatccatgttta 500
           ||||||| || ||||||||   || |||||||||||| ||||||||||
Sbjct: 646 ttatctcgttacagaaccggtaaagtcccatccattggtccatgttta 599
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>gb|AC154003.4| Mus musculus 6 BAC RP24-92L16 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 200703

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     ctcaggatatgggataggcc 35
              ||||||||||||||||||||
Sbjct: 140799 ctcaggatatgggataggcc 140818
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>gb|AC154767.2| Mus musculus BAC clone RP23-105P19 from chromosome 13, complete
             sequence
          Length = 189362

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 385   ttcaacaaaattgtctaaaa 404
             ||||||||||||||||||||
Sbjct: 52136 ttcaacaaaattgtctaaaa 52117
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>emb|BX072574.7| Zebrafish DNA sequence from clone DKEY-27P21 in linkage group 5, complete
              sequence
          Length = 140410

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 190    caagtattaaaaagtgaaaa 209
              ||||||||||||||||||||
Sbjct: 118699 caagtattaaaaagtgaaaa 118680
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>emb|BX119982.8| Zebrafish DNA sequence from clone CH211-214J4 in linkage group 23,
              complete sequence
          Length = 210702

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     gctcttgaaactacacacct 117
              ||||||||||||||||||||
Sbjct: 115825 gctcttgaaactacacacct 115806



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  caagtattaaaaagtgaaaa 209
            ||||||||||||||||||||
Sbjct: 1420 caagtattaaaaagtgaaaa 1401
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>emb|BX005215.13| Mouse DNA sequence from clone RP23-280F9 on chromosome X, complete
              sequence
          Length = 189900

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    aaagtgaaaagcaaactaca 219
              ||||||||||||||||||||
Sbjct: 103556 aaagtgaaaagcaaactaca 103537
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>emb|BX005335.9| Zebrafish DNA sequence from clone DKEY-240N8, complete sequence
          Length = 211094

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    tcaagtattaaaaagtgaaa 208
              ||||||||||||||||||||
Sbjct: 176799 tcaagtattaaaaagtgaaa 176780
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>dbj|AK111524.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P07, full
            insert sequence
          Length = 1396

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 331  catcttcaccaccactcgag 350
            ||||||||||||||||||||
Sbjct: 1052 catcttcaccaccactcgag 1033
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>dbj|AK104927.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-H11, full
            insert sequence
          Length = 1395

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 331  catcttcaccaccactcgag 350
            ||||||||||||||||||||
Sbjct: 1051 catcttcaccaccactcgag 1032
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>emb|BX927293.15| Zebrafish DNA sequence from clone DKEY-95H12 in linkage group 18,
             complete sequence
          Length = 150229

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   tcaagtattaaaaagtgaaa 208
             ||||||||||||||||||||
Sbjct: 32004 tcaagtattaaaaagtgaaa 32023
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>emb|CR356233.12| Zebrafish DNA sequence from clone CH211-262N1, complete sequence
          Length = 146900

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   tattaaaaagtgaaaagcaa 213
             ||||||||||||||||||||
Sbjct: 29667 tattaaaaagtgaaaagcaa 29648
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>emb|BX119988.9| Zebrafish DNA sequence from clone CH211-184L6 in linkage group 18,
              complete sequence
          Length = 141930

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    tcaagtattaaaaagtgaaa 208
              ||||||||||||||||||||
Sbjct: 126623 tcaagtattaaaaagtgaaa 126604
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>dbj|AB021170.1| Candida albicans gene for alpha subunit of geranylgeranyl
           transferaes type 2, complete cds, strain ATCC10231
          Length = 1265

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 362 taattttcatttgctcttaa 381
           ||||||||||||||||||||
Sbjct: 260 taattttcatttgctcttaa 241
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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 191     aagtattaaaaagtgaaaag 210
               ||||||||||||||||||||
Sbjct: 4818043 aagtattaaaaagtgaaaag 4818024
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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 191     aagtattaaaaagtgaaaag 210
               ||||||||||||||||||||
Sbjct: 4666053 aagtattaaaaagtgaaaag 4666034
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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 191     aagtattaaaaagtgaaaag 210
               ||||||||||||||||||||
Sbjct: 4665179 aagtattaaaaagtgaaaag 4665160
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>emb|AL935115.6| Zebrafish DNA sequence from clone CH211-199D18, complete sequence
          Length = 187326

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 383    cattcaacaaaattgtctaaaatt 406
              |||||||||||||||| |||||||
Sbjct: 183290 cattcaacaaaattgtataaaatt 183313
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>emb|CR450797.9| Zebrafish DNA sequence from clone CH211-80B12 in linkage group 11,
             complete sequence
          Length = 101488

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 464   cagaaccgaagaaatcccat 483
             ||||||||||||||||||||
Sbjct: 82163 cagaaccgaagaaatcccat 82182
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>emb|BX255908.4| Zebrafish DNA sequence from clone CH211-250O16 in linkage group 5,
            complete sequence
          Length = 121726

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 383  cattcaacaaaattgtctaaaatt 406
            |||||||||||||||| |||||||
Sbjct: 4442 cattcaacaaaattgtataaaatt 4465
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>gb|AY953371.1| Brevibacillus texasporus strain ATCC PTA-5854 nonribosomal peptide
             synthetase operon, complete sequence
          Length = 50646

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 366   tttcatttgctcttaaccattcaacaaa 393
             |||||||| ||| |||||||||||||||
Sbjct: 23813 tttcatttactcgtaaccattcaacaaa 23786
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>gb|AC170870.2| Mus musculus BAC clone RP24-303O21 from chromosome y, complete sequence
          Length = 169086

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 320    catttagattgcatcttcac 339
              ||||||||||||||||||||
Sbjct: 113057 catttagattgcatcttcac 113038


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,305,374
Number of Sequences: 3902068
Number of extensions: 6305374
Number of successful extensions: 126885
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126329
Number of HSP's gapped (non-prelim): 556
length of query: 500
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 478
effective length of database: 17,147,199,772
effective search space: 8196361491016
effective search space used: 8196361491016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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