ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart54h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIP1_ATRCA (P42767) Aquaporin PIP-type 59 4e-09
2PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane ... 58 1e-08
3PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane ... 57 2e-08
4PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic... 57 2e-08
5PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane ... 52 7e-07
6PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane ... 51 1e-06
7PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane ... 49 7e-06
8PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane ... 47 2e-05
9PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic... 45 8e-05
10PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic... 45 8e-05
11PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic... 45 8e-05
12PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane ... 44 1e-04
13PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane ... 44 1e-04
14PIP28_ORYSA (Q7Y1E6) Probable aquaporin PIP2.8 (Plasma membrane ... 43 3e-04
15PIP24_ORYSA (Q8GRT8) Aquaporin PIP2.4 (Plasma membrane intrinsic... 40 0.002
16PIP27_ORYSA (Q651D5) Probable aquaporin PIP2.7 (Plasma membrane ... 40 0.002
17PIP25_ORYSA (Q8GRI8) Aquaporin PIP2.5 (Plasma membrane intrinsic... 40 0.003
18PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic... 40 0.003
19PIP2_PEA (P25794) Probable aquaporin PIP-type 7a (Turgor-respons... 39 0.006
20PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane ... 39 0.006
21PIP15_ARATH (Q8LAA6) Probable aquaporin PIP1.5 (Plasma membrane ... 39 0.006
22PIP14_ARATH (Q39196) Probable aquaporin PIP1.4 (Plasma membrane ... 39 0.006
23PIP13_ARATH (Q08733) Aquaporin PIP1.3 (Plasma membrane intrinsic... 39 0.006
24PIP13_ORYSA (Q9SXF8) Aquaporin PIP 1.3 (Plasma membrane intrinsi... 36 0.037
25PIP12_ARATH (Q06611) Aquaporin PIP1.2 (Plasma membrane intrinsic... 36 0.037
26PIP11_VICFA (P61838) Aquaporin PIP1.1 (Plasma membrane intrinsic... 36 0.037
27PIP11_ARATH (P61837) Aquaporin PIP1.1 (Plasma membrane intrinsic... 36 0.037
28PIP1_LYCES (Q08451) Probable aquaporin PIP-type pTOM75 (Ripening... 35 0.063
29SMYD4_PONPY (Q5R5X9) SET and MYND domain-containing protein 4 31 1.6
30SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4 31 1.6
31SMYD4_CHICK (Q5F3V0) SET and MYND domain-containing protein 4 30 2.0
32UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-reco... 30 3.5
33CATA_BACST (P14412) Peroxidase/catalase (EC 1.11.1.6) (Catalase-... 29 5.9
34TELT_MOUSE (O70548) Telethonin (Titin cap protein) 28 7.7
35SMYD4_MOUSE (Q8BTK5) SET and MYND domain-containing protein 4 28 7.7
36AQP2_SHEEP (O62735) Aquaporin-2 (AQP-2) (Aquaporin-CD) (AQP-CD) ... 28 7.7
37AQP4_RAT (P47863) Aquaporin-4 (AQP-4) (WCH4) (Mercurial-insensit... 28 7.7

>PIP1_ATRCA (P42767) Aquaporin PIP-type|
          Length = 282

 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 27/28 (96%), Positives = 28/28 (100%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKALG 357
           WVGPFVGALAAAAYHQY+LRAAAIKALG
Sbjct: 247 WVGPFVGALAAAAYHQYVLRAAAIKALG 274



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>PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2.6) (OsPIP2.6)
          Length = 282

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKALG 357
           W GPF+GALAAAAYHQYILRAAAIKALG
Sbjct: 247 WAGPFIGALAAAAYHQYILRAAAIKALG 274



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>PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane intrinsic|
           protein 3b) (PIP3b)
          Length = 278

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKAL 360
           WVGPFVGALAAAAYHQYILRAAAIKAL
Sbjct: 243 WVGPFVGALAAAAYHQYILRAAAIKAL 269



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>PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic protein 3)|
           (Salt stress-induced major intrinsic protein)
          Length = 280

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 26/28 (92%), Positives = 28/28 (100%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKALG 357
           WVGPF+GALAAAAYHQYILRA+AIKALG
Sbjct: 245 WVGPFLGALAAAAYHQYILRASAIKALG 272



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>PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane intrinsic|
           protein 2a) (PIP2a) (OsPIP2.1)
          Length = 290

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 24/28 (85%), Positives = 24/28 (85%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKALG 357
           WVGPFVGA  AA YHQYILRA AIKALG
Sbjct: 257 WVGPFVGAAIAAFYHQYILRAGAIKALG 284



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>PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane intrinsic|
           protein 2.4)
          Length = 291

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 23/28 (82%), Positives = 25/28 (89%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKALG 357
           WVGP +GA AAA YHQ+ILRAAAIKALG
Sbjct: 252 WVGPMIGAAAAAFYHQFILRAAAIKALG 279



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>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic|
           protein 2d) (PIP2d)
          Length = 286

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 21/28 (75%), Positives = 23/28 (82%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKALG 357
           WVGPF GA  AA YHQ++LRA AIKALG
Sbjct: 251 WVGPFAGAAIAAFYHQFVLRAGAIKALG 278



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>PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2e) (PIP2e)
          Length = 289

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 20/28 (71%), Positives = 23/28 (82%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKALG 357
           WVGPFVGA  AA YHQ++LRA A+KA G
Sbjct: 251 WVGPFVGAAIAAFYHQFVLRAGAMKAYG 278



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>PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic protein 2c)|
           (PIP2c) (TMP2C) (RD28-PIP) (Water stress-induced
           tonoplast intrinsic protein) (WSI-TIP)
          Length = 285

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 18/28 (64%), Positives = 23/28 (82%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKALG 357
           WVGPF+GA  AA YHQ++LRA+  K+LG
Sbjct: 250 WVGPFIGATIAAFYHQFVLRASGSKSLG 277



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>PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic protein 2b)|
           (PIP2b) (TMP2b)
          Length = 285

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 18/28 (64%), Positives = 23/28 (82%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKALG 357
           WVGPF+GA  AA YHQ++LRA+  K+LG
Sbjct: 250 WVGPFIGAAIAAFYHQFVLRASGSKSLG 277



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>PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic protein 2a)|
           (PIP2a)
          Length = 287

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 18/28 (64%), Positives = 23/28 (82%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKALG 357
           WVGPF+GA  AA YHQ++LRA+  K+LG
Sbjct: 252 WVGPFIGAAIAAFYHQFVLRASGSKSLG 279



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>PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane intrinsic|
           protein 2.2) (OsPIP2.2)
          Length = 288

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIK 366
           WVGP +GA  AAAYHQY+LRA+A K
Sbjct: 256 WVGPLIGAAIAAAYHQYVLRASAAK 280



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>PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane intrinsic|
           protein 2.3) (OsPIP2.3)
          Length = 290

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIK 366
           WVGP +GA  AAAYHQY+LRA+A K
Sbjct: 257 WVGPLIGAAIAAAYHQYVLRASAAK 281



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>PIP28_ORYSA (Q7Y1E6) Probable aquaporin PIP2.8 (Plasma membrane intrinsic|
           protein 2.8) (OsPIP2.8)
          Length = 280

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 19/26 (73%), Positives = 19/26 (73%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKA 363
           WVGPF GA AA  YH YILR AA KA
Sbjct: 244 WVGPFAGAAAAMIYHHYILRGAAAKA 269



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>PIP24_ORYSA (Q8GRT8) Aquaporin PIP2.4 (Plasma membrane intrinsic protein 2.4)|
           (OsPIP2.4)
          Length = 286

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAA 372
           WVGPF+GA  AA YHQ ILRA+A
Sbjct: 254 WVGPFIGAAIAALYHQVILRASA 276



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>PIP27_ORYSA (Q651D5) Probable aquaporin PIP2.7 (Plasma membrane intrinsic|
           protein 2.7) (OsPIP2.7)
          Length = 290

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKAL 360
           WVGP +GA  AAAYH+ +LR  A KAL
Sbjct: 254 WVGPVIGAFLAAAYHKLVLRGEAAKAL 280



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>PIP25_ORYSA (Q8GRI8) Aquaporin PIP2.5 (Plasma membrane intrinsic protein 2.5)|
           (OsPIP2.5)
          Length = 283

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAA 372
           WVGPF+GA  AA YHQ +LRA+A
Sbjct: 251 WVGPFIGAAIAALYHQIVLRASA 273



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>PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (OsPIP1.1) (Water channel protein RWC1) (RWC-1)
          Length = 289

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKA 363
           WVGPFVGA  AA YHQ I+RA   K+
Sbjct: 262 WVGPFVGAALAAIYHQVIIRAIPFKS 287



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>PIP2_PEA (P25794) Probable aquaporin PIP-type 7a (Turgor-responsive protein|
           7a) (Turgor-responsive protein 31)
          Length = 289

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKA 363
           WVGPF+GA  AA YHQ ++RA   K+
Sbjct: 263 WVGPFIGAALAALYHQVVIRAIPFKS 288



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>PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane intrinsic|
           protein 1.2) (OsPIP1.2)
          Length = 282

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKA 363
           WVGPF+GA  AA YHQ ++RA   K+
Sbjct: 255 WVGPFIGAALAAIYHQVVIRAIPFKS 280



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>PIP15_ARATH (Q8LAA6) Probable aquaporin PIP1.5 (Plasma membrane intrinsic|
           protein 1d) (PIP1d)
          Length = 287

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKA 363
           WVGPF+GA  AA YHQ ++RA   K+
Sbjct: 260 WVGPFIGAALAALYHQIVIRAIPFKS 285



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>PIP14_ARATH (Q39196) Probable aquaporin PIP1.4 (Plasma membrane intrinsic|
           protein 1.4) (Transmembrane protein C) (TMP-C)
          Length = 287

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKA 363
           WVGPF+GA  AA YHQ ++RA   K+
Sbjct: 260 WVGPFIGAALAALYHQIVIRAIPFKS 285



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>PIP13_ARATH (Q08733) Aquaporin PIP1.3 (Plasma membrane intrinsic protein 1c)|
           (PIP1c) (Transmembrane protein B) (TMP-B)
          Length = 286

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKA 363
           WVGPF+GA  AA YHQ ++RA   K+
Sbjct: 259 WVGPFIGAALAALYHQLVIRAIPFKS 284



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>PIP13_ORYSA (Q9SXF8) Aquaporin PIP 1.3 (Plasma membrane intrinsic protein 1.3)|
           (OsPIP1.3) (Water channel protein RWC3) (RWC-3)
          Length = 288

 Score = 36.2 bits (82), Expect = 0.037
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKA 363
           WVGPF+GA  AA YH  ++RA   K+
Sbjct: 261 WVGPFIGAALAAIYHVVVIRAIPFKS 286



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>PIP12_ARATH (Q06611) Aquaporin PIP1.2 (Plasma membrane intrinsic protein 1b)|
           (PIP1b) (Transmembrane protein A) (TMP-A) (AthH2)
          Length = 286

 Score = 36.2 bits (82), Expect = 0.037
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKA 363
           WVGPF+GA  AA YH  ++RA   K+
Sbjct: 259 WVGPFIGAALAALYHVIVIRAIPFKS 284



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>PIP11_VICFA (P61838) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1)
          Length = 286

 Score = 36.2 bits (82), Expect = 0.037
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKA 363
           WVGPF+GA  AA YH  ++RA   K+
Sbjct: 259 WVGPFIGAALAALYHVVVIRAIPFKS 284



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>PIP11_ARATH (P61837) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1)
          Length = 286

 Score = 36.2 bits (82), Expect = 0.037
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRAAAIKA 363
           WVGPF+GA  AA YH  ++RA   K+
Sbjct: 259 WVGPFIGAALAALYHVVVIRAIPFKS 284



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>PIP1_LYCES (Q08451) Probable aquaporin PIP-type pTOM75 (Ripening-associated|
           membrane protein) (RAMP)
          Length = 286

 Score = 35.4 bits (80), Expect = 0.063
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYILRA 378
           WVGP +GA  AA YHQ I+RA
Sbjct: 260 WVGPMIGAALAAIYHQIIIRA 280



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>SMYD4_PONPY (Q5R5X9) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 293 YCHRCIKLLAGVLSCSGCS 349
           YCHRC+K     + C GCS
Sbjct: 295 YCHRCLKHTLATVPCDGCS 313



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>SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 293 YCHRCIKLLAGVLSCSGCS 349
           YCHRC+K     + C GCS
Sbjct: 295 YCHRCLKHTLATVPCDGCS 313



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>SMYD4_CHICK (Q5F3V0) SET and MYND domain-containing protein 4|
          Length = 742

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 293 YCHRCIKLLAGVLSCSGCS 349
           YCH C+K L   + C GCS
Sbjct: 294 YCHHCLKQLLASIPCCGCS 312



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>UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-recognin (EC|
            6.-.-.-) (Ubiquitin-protein ligase E3-alpha)
          Length = 1927

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 351  PEQPEQLSTPANNLMQRWQYCSSCPSGAS*PHKRTGFVLAVLLLHRAHP 205
            P +P+   TP + L+      S  P+ A  PH  T F   V L + A P
Sbjct: 1560 PPRPKLAQTPGSPLLSAPSTSSFTPAPAQIPHSGTNFAFLVQLFNPAGP 1608



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>CATA_BACST (P14412) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)|
          Length = 735

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 153 WWPLSLSLTCMHRH*TRPDGHD 218
           WWP  L+L+ +H+H  + + HD
Sbjct: 31  WWPNQLNLSILHQHDRKTNPHD 52



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>TELT_MOUSE (O70548) Telethonin (Titin cap protein)|
          Length = 167

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 188 QTLNEAGWARWRSSTANTKPVRLCG*LAPDGHEEQYCHR 304
           Q   EA WA W+  T +T+P   C     D    +  HR
Sbjct: 15  QERREAFWAEWKDLTLSTRPEEGCSLHEEDTQRHETYHR 53



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>SMYD4_MOUSE (Q8BTK5) SET and MYND domain-containing protein 4|
          Length = 799

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 293 YCHRCIKLLAGVLSCSGCS 349
           YCHRC+K     + C  CS
Sbjct: 295 YCHRCLKHTLATVPCGSCS 313



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>AQP2_SHEEP (O62735) Aquaporin-2 (AQP-2) (Aquaporin-CD) (AQP-CD) (Water channel|
           protein for renal collecting duct) (ADH water channel)
           (Collecting duct water channel protein) (WCH-CD)
          Length = 271

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYIL 384
           W+GP VGA+ A+  + Y+L
Sbjct: 205 WIGPLVGAIVASLLYNYVL 223



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>AQP4_RAT (P47863) Aquaporin-4 (AQP-4) (WCH4) (Mercurial-insensitive water|
           channel) (MIWC)
          Length = 323

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 440 WVGPFVGALAAAAYHQYI 387
           WVGP +GA+ A A ++Y+
Sbjct: 234 WVGPIIGAVLAGALYEYV 251


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,315,749
Number of Sequences: 219361
Number of extensions: 1011250
Number of successful extensions: 2493
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 2424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2492
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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