Clone Name | rbart54g11 |
---|---|
Clone Library Name | barley_pub |
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 80.1 bits (196), Expect = 1e-15 Identities = 41/75 (54%), Positives = 49/75 (65%), Gaps = 1/75 (1%) Frame = -2 Query: 408 GYGGGEYNFDRNIRCGDKVQVN-GTSVLAGKSCDDPSRSVSWDGVRFTEAANRFVFDQIV 232 GYGG +YNF CGD V + GT ++ G SC PS V+WDG +TEAAN + FDQI Sbjct: 307 GYGG-KYNFSVTAPCGDTVTADDGTKIVVG-SCACPSVRVNWDGAHYTEAANEYFFDQIS 364 Query: 231 DGALADPPVPLRRAC 187 GA +DPPVPL AC Sbjct: 365 TGAFSDPPVPLNMAC 379
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 75.5 bits (184), Expect = 3e-14 Identities = 37/76 (48%), Positives = 49/76 (64%) Frame = -2 Query: 399 GGEYNFDRNIRCGDKVQVNGTSVLAGKSCDDPSRSVSWDGVRFTEAANRFVFDQIVDGAL 220 GG+YN+++ I CG K V G V GK CD+P ++V WDGV FT+AAN+F+FD+I G Sbjct: 307 GGKYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAANKFIFDKIAPG-- 364 Query: 219 ADPPVPLRRACQGKRQ 172 L +AC KRQ Sbjct: 365 ------LSKAC--KRQ 372
>APXL_HUMAN (Q13796) Apical-like protein (APXL protein)| Length = 1616 Score = 30.4 bits (67), Expect = 1.0 Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = +1 Query: 193 PPKRHGRVGERAVDDLVEDEPVGRLGEAHAVPAHAPRRV-ITRLSCQH 333 PPKR R RA D D PVG LG P+ A V + RLS H Sbjct: 1067 PPKREPR-RYRATDGAPADAPVGVLGRPFPTPSPASLDVYVARLSLSH 1113
>SDC25_YEAST (P14771) Guanine nucleotide exchange factor SDC25| Length = 1252 Score = 29.6 bits (65), Expect = 1.8 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 16/80 (20%) Frame = +2 Query: 143 SLINEQYHAHCRLPWQARRRGT-----GGSASAPSTIWSK-----------TNLLAASVK 274 S +E H P+Q RRRGT GS+ TIWSK +L+ A K Sbjct: 417 SCSSETSHHSPSAPFQRRRRGTIFSNVSGSSDESDTIWSKRKKPYPLNEETLSLVRARKK 476 Query: 275 RTPSQLTLLDGSSHDFPAST 334 + +L + S++++ ++T Sbjct: 477 QLDGKLKQMIKSANEYLSNT 496
>DMI1L_ORYSA (Q75LD5) Putative ion channel DMI1-like, chloroplast precursor| Length = 893 Score = 28.9 bits (63), Expect = 3.0 Identities = 23/69 (33%), Positives = 33/69 (47%) Frame = +2 Query: 113 YGCVKNGYFRSLINEQYHAHCRLPWQARRRGTGGSASAPSTIWSKTNLLAASVKRTPSQL 292 Y V+ G R+L E+ A +P A+ G+ +ASA + WS +AA V S L Sbjct: 93 YAGVRRGDVRTLTAEKAAAAAAVPTAAQVHGSKSAASATTLRWSGMVSVAAIV-LCFSSL 151 Query: 293 TLLDGSSHD 319 + S HD Sbjct: 152 VRSNSSLHD 160
>YYVP_CAEEL (Q93834) Hypothetical protein F59C6.8| Length = 529 Score = 28.5 bits (62), Expect = 4.0 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%) Frame = +2 Query: 20 LTNRFSVPIFSTTCTFYLEYDTRCRFYLNYTYGCVKNGYFRSLINEQY-----HAHCRL- 181 L R+ + + + TF+ E F + YG + Y RS+I + + + + R+ Sbjct: 174 LNERWQLLLATVEVTFHQELHDHSIFQIYSHYGAFMHFYVRSIITDLFKLIKDNKNTRIS 233 Query: 182 PWQARRRGTGGSAS 223 PW A R G +AS Sbjct: 234 PWSAIRIGESRAAS 247
>NGN2_MOUSE (P70447) Neurogenin 2 (Atonal protein homolog 4) (Helix-loop-helix| protein mATH-4A) (MATH4A) Length = 263 Score = 28.5 bits (62), Expect = 4.0 Identities = 20/69 (28%), Positives = 26/69 (37%) Frame = +2 Query: 203 GTGGSASAPSTIWSKTNLLAASVKRTPSQLTLLDGSSHDFPASTDVPFTCTLSPHRMFRS 382 G G + +P + WS TN A+S T P++CTLSP Sbjct: 198 GASGDSPSPPSSWSCTNSPASSSNSTS-------------------PYSCTLSPASPGSD 238 Query: 383 KLYSPPPYP 409 Y PP P Sbjct: 239 VDYWQPPPP 247
>RESC_BACSU (P35162) Protein resC| Length = 352 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +3 Query: 9 LGRHLQIDFRCRFFLPPAHF 68 +G+H F CRFFLPP F Sbjct: 1 MGQHWNHPFYCRFFLPPRIF 20
>YC81_CAEEL (Q19981) Hypothetical protein F33C8.1 precursor| Length = 1271 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/65 (27%), Positives = 28/65 (43%) Frame = +2 Query: 209 GGSASAPSTIWSKTNLLAASVKRTPSQLTLLDGSSHDFPASTDVPFTCTLSPHRMFRSKL 388 G + S +W+ + +S R + DG+ F S+ VPF T+S F S + Sbjct: 582 GFNGKMKSDVWTLSPAKCSSATRPDECRLITDGTKCVFVDSSCVPFDPTVSYKSSFASMI 641 Query: 389 YSPPP 403 S P Sbjct: 642 KSSTP 646
>ZIM10_MOUSE (Q6P1E1) Retinoic acid-induced protein 17 (PIAS-like protein| Zimp10) Length = 1072 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/35 (34%), Positives = 16/35 (45%) Frame = +2 Query: 179 LPWQARRRGTGGSASAPSTIWSKTNLLAASVKRTP 283 +PWQ GS S +T+W TN + V P Sbjct: 151 VPWQQNTNQPPGSLSVVTTVWGVTNTSQSQVLGNP 185
>YVFO_BACSU (O07013) Hypothetical family 53 glycosyl hydrolase yvfO precursor| (EC 3.2.-.-) Length = 429 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -2 Query: 408 GYGGGEYNFDRNIRCGDKVQVNGTSVLA 325 GYGGG + + I G + NG VLA Sbjct: 109 GYGGGNNDVQKAIEIGKRATANGMKVLA 136
>ZIM10_HUMAN (Q9ULJ6) Retinoic acid-induced protein 17 (PIAS-like protein| Zimp10) Length = 1067 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/35 (34%), Positives = 16/35 (45%) Frame = +2 Query: 179 LPWQARRRGTGGSASAPSTIWSKTNLLAASVKRTP 283 +PWQ GS S +T+W TN + V P Sbjct: 151 VPWQQNTNQPPGSLSVVTTVWGVTNTSQSQVLGNP 185
>SMG7_HUMAN (Q92540) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)| Length = 1137 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = +2 Query: 242 SKTNLLAASVKRTPSQLTLLDGS--SHDFPASTDVPFTCTLSPHRMFRSKLYSPPP 403 SK L + + S +L +G+ S PAS+D + SPH S L S PP Sbjct: 962 SKAELSPSMAPQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPP 1017
>C3AR_CAVPO (O88680) C3a anaphylatoxin chemotactic receptor (C3a-R) (C3AR)| Length = 475 Score = 27.7 bits (60), Expect = 6.8 Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 8/92 (8%) Frame = +2 Query: 38 VPIFSTTCTFYLEYDTRCRF--------YLNYTYGCVKNGYFRSLINEQYHAHCRLPWQA 193 +P+F TF LE T C + YL+Y Y GY +LP + Sbjct: 155 IPVFVYRETFTLENHTICTYNFSPGSFDYLDYAYDRDAWGYGTP------DPIVQLPGEM 208 Query: 194 RRRGTGGSASAPSTIWSKTNLLAASVKRTPSQ 289 R S WS T L + + PS+ Sbjct: 209 EHRSDPSSFQTQDGPWSVTTTLYSQTSQRPSE 240
>SMG7_MOUSE (Q5RJH6) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)| Length = 1138 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = +2 Query: 233 TIWSKTNLLAASVKRTPSQLTLLDGS--SHDFPASTDVPFTCTLSPHRMFRSKLYSPPP 403 T SK L + + S +L +G+ S PAS+D + SPH S L S PP Sbjct: 960 TTSSKAELNPSVASQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPP 1018
>ASK1_KLULA (Q6CTH8) DASH complex subunit ASK1 (Outer kinetochore protein ASK1)| (Associated with spindles and kinetochores protein 1) Length = 218 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = -2 Query: 324 GKSCDDPSRSVSWDGVRFTEAAN-RFVFDQIVDGA 223 G++C+D + S SW F ++AN + V DQ V+ A Sbjct: 43 GQTCEDITNSSSWLKEMFQQSANVQLVTDQAVESA 77
>MTT8_THET8 (P29749) Modification methylase TthHB8I (EC 2.1.1.72)| (Adenine-specific methyltransferase TthHB8I) (M.TthHB8I) Length = 428 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 7/52 (13%) Frame = +1 Query: 175 PFALASPPKRHGRVGE-------RAVDDLVEDEPVGRLGEAHAVPAHAPRRV 309 P AL PP G V + A D ++ + P G +GEA P H R V Sbjct: 72 PHALDLPPWAEGVVADFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVLREV 123
>UL16_HHV11 (P10200) Protein UL16| Length = 373 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = +1 Query: 166 CSLPFA---LASPPKRHGRVGERAVDDLVEDEPVGRLGEAHAVPAHAP 300 C+L FA A+PP+ + + L E+ VG L A+ VPA P Sbjct: 142 CTLTFARIRAATPPEE---TPDPTTEQLAEEPVVGELDGAYLVPAKTP 186
>TUSA_HAEDU (Q7VNY2) Sulfurtransferase tusA homolog (EC 2.8.1.-)| Length = 79 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = +2 Query: 317 DFPAST-DVPFTCTLSPHRMFRSKLYSPP 400 D PA+T D+P C H++ +SK +PP Sbjct: 42 DDPATTRDIPSFCEFMDHQLLKSKTDTPP 70
>AT5G2_SHEEP (Q06056) ATP synthase lipid-binding protein, mitochondrial| precursor (EC 3.6.3.14) (ATP synthase proteolipid P2) (ATPase protein 9) (ATPase subunit C) Length = 143 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = +2 Query: 221 SAPSTIWSKTNLLAAS----VKRTPSQLTLLDGSSHDFPASTDVPFTCTLSPHRMFRSKL 388 S PS I + LL+ S V R P LT SH A P T +L+P R F++ Sbjct: 9 STPSLIRRTSTLLSRSLSAVVVRRPETLT---DESHSSLAVVPRPLTTSLTPSRSFQTSA 65 Query: 389 YS 394 S Sbjct: 66 IS 67
>AT5G2_BOVIN (P07926) ATP synthase lipid-binding protein, mitochondrial| precursor (EC 3.6.3.14) (ATP synthase proteolipid P2) (ATPase protein 9) (ATPase subunit C) Length = 143 Score = 27.3 bits (59), Expect = 8.9 Identities = 20/55 (36%), Positives = 28/55 (50%) Frame = +2 Query: 230 STIWSKTNLLAASVKRTPSQLTLLDGSSHDFPASTDVPFTCTLSPHRMFRSKLYS 394 ST+ S++ L+A V R P LT SH A P T +L+P R F++ S Sbjct: 18 STVLSRS--LSAVVVRRPETLT---DESHSSLAVVPRPLTTSLTPSRSFQTSAIS 67
>PHSM_ECOLI (P00490) Maltodextrin phosphorylase (EC 2.4.1.1)| Length = 796 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = -2 Query: 66 NVQVVEKIGTENLFVSG 16 NV++ EK+G EN+F+ G Sbjct: 661 NVEIAEKVGEENIFIFG 677
>SYA_DESPS (Q6AQ16) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 882 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = -2 Query: 366 CGDKVQVNGTSVLAGKSCDDPSRSVSWDGVRFTEAANR--FVFDQIVDGALADPPVP 202 CG +++ + CD+P+ +V D RF E N F++ DG+L P P Sbjct: 168 CGPCSEIHIDQGVGSSPCDNPNCAVGCDCDRFLELWNLVFMQFNRAEDGSLTALPRP 224
>SMYD1_MOUSE (P97443) SET and MYND domain-containing protein 1 (Zinc-finger| protein BOP) (m-BOP) (CD8b-opposite) Length = 485 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Frame = +2 Query: 59 CTFYLEYDTRCR--FYLNYTYGCVKNGYFRSLINEQYHAHCRLPWQARRRGTG 211 C F D C+ +LN+ C + + NE R+ W+ R GTG Sbjct: 63 CKFAHYCDRTCQKDAWLNHKNECAAIKKYGKVPNENIRLAARIMWRVEREGTG 115 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,152,492 Number of Sequences: 219361 Number of extensions: 1191440 Number of successful extensions: 3357 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3288 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3356 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)