ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart54g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 80 1e-15
2FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 75 3e-14
3APXL_HUMAN (Q13796) Apical-like protein (APXL protein) 30 1.0
4SDC25_YEAST (P14771) Guanine nucleotide exchange factor SDC25 30 1.8
5DMI1L_ORYSA (Q75LD5) Putative ion channel DMI1-like, chloroplast... 29 3.0
6YYVP_CAEEL (Q93834) Hypothetical protein F59C6.8 28 4.0
7NGN2_MOUSE (P70447) Neurogenin 2 (Atonal protein homolog 4) (Hel... 28 4.0
8RESC_BACSU (P35162) Protein resC 28 5.2
9YC81_CAEEL (Q19981) Hypothetical protein F33C8.1 precursor 28 5.2
10ZIM10_MOUSE (Q6P1E1) Retinoic acid-induced protein 17 (PIAS-like... 28 5.2
11YVFO_BACSU (O07013) Hypothetical family 53 glycosyl hydrolase yv... 28 5.2
12ZIM10_HUMAN (Q9ULJ6) Retinoic acid-induced protein 17 (PIAS-like... 28 5.2
13SMG7_HUMAN (Q92540) Protein SMG7 (SMG-7 homolog) (EST1-like prot... 28 6.8
14C3AR_CAVPO (O88680) C3a anaphylatoxin chemotactic receptor (C3a-... 28 6.8
15SMG7_MOUSE (Q5RJH6) Protein SMG7 (SMG-7 homolog) (EST1-like prot... 28 6.8
16ASK1_KLULA (Q6CTH8) DASH complex subunit ASK1 (Outer kinetochore... 28 6.8
17MTT8_THET8 (P29749) Modification methylase TthHB8I (EC 2.1.1.72)... 27 8.9
18UL16_HHV11 (P10200) Protein UL16 27 8.9
19TUSA_HAEDU (Q7VNY2) Sulfurtransferase tusA homolog (EC 2.8.1.-) 27 8.9
20AT5G2_SHEEP (Q06056) ATP synthase lipid-binding protein, mitocho... 27 8.9
21AT5G2_BOVIN (P07926) ATP synthase lipid-binding protein, mitocho... 27 8.9
22PHSM_ECOLI (P00490) Maltodextrin phosphorylase (EC 2.4.1.1) 27 8.9
23SYA_DESPS (Q6AQ16) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 27 8.9
24SMYD1_MOUSE (P97443) SET and MYND domain-containing protein 1 (Z... 27 8.9

>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 41/75 (54%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
 Frame = -2

Query: 408 GYGGGEYNFDRNIRCGDKVQVN-GTSVLAGKSCDDPSRSVSWDGVRFTEAANRFVFDQIV 232
           GYGG +YNF     CGD V  + GT ++ G SC  PS  V+WDG  +TEAAN + FDQI 
Sbjct: 307 GYGG-KYNFSVTAPCGDTVTADDGTKIVVG-SCACPSVRVNWDGAHYTEAANEYFFDQIS 364

Query: 231 DGALADPPVPLRRAC 187
            GA +DPPVPL  AC
Sbjct: 365 TGAFSDPPVPLNMAC 379



to top

>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 75.5 bits (184), Expect = 3e-14
 Identities = 37/76 (48%), Positives = 49/76 (64%)
 Frame = -2

Query: 399 GGEYNFDRNIRCGDKVQVNGTSVLAGKSCDDPSRSVSWDGVRFTEAANRFVFDQIVDGAL 220
           GG+YN+++ I CG K  V G  V  GK CD+P ++V WDGV FT+AAN+F+FD+I  G  
Sbjct: 307 GGKYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAANKFIFDKIAPG-- 364

Query: 219 ADPPVPLRRACQGKRQ 172
                 L +AC  KRQ
Sbjct: 365 ------LSKAC--KRQ 372



to top

>APXL_HUMAN (Q13796) Apical-like protein (APXL protein)|
          Length = 1616

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 193  PPKRHGRVGERAVDDLVEDEPVGRLGEAHAVPAHAPRRV-ITRLSCQH 333
            PPKR  R   RA D    D PVG LG     P+ A   V + RLS  H
Sbjct: 1067 PPKREPR-RYRATDGAPADAPVGVLGRPFPTPSPASLDVYVARLSLSH 1113



to top

>SDC25_YEAST (P14771) Guanine nucleotide exchange factor SDC25|
          Length = 1252

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 16/80 (20%)
 Frame = +2

Query: 143 SLINEQYHAHCRLPWQARRRGT-----GGSASAPSTIWSK-----------TNLLAASVK 274
           S  +E  H     P+Q RRRGT      GS+    TIWSK            +L+ A  K
Sbjct: 417 SCSSETSHHSPSAPFQRRRRGTIFSNVSGSSDESDTIWSKRKKPYPLNEETLSLVRARKK 476

Query: 275 RTPSQLTLLDGSSHDFPAST 334
           +   +L  +  S++++ ++T
Sbjct: 477 QLDGKLKQMIKSANEYLSNT 496



to top

>DMI1L_ORYSA (Q75LD5) Putative ion channel DMI1-like, chloroplast precursor|
          Length = 893

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 23/69 (33%), Positives = 33/69 (47%)
 Frame = +2

Query: 113 YGCVKNGYFRSLINEQYHAHCRLPWQARRRGTGGSASAPSTIWSKTNLLAASVKRTPSQL 292
           Y  V+ G  R+L  E+  A   +P  A+  G+  +ASA +  WS    +AA V    S L
Sbjct: 93  YAGVRRGDVRTLTAEKAAAAAAVPTAAQVHGSKSAASATTLRWSGMVSVAAIV-LCFSSL 151

Query: 293 TLLDGSSHD 319
              + S HD
Sbjct: 152 VRSNSSLHD 160



to top

>YYVP_CAEEL (Q93834) Hypothetical protein F59C6.8|
          Length = 529

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = +2

Query: 20  LTNRFSVPIFSTTCTFYLEYDTRCRFYLNYTYGCVKNGYFRSLINEQY-----HAHCRL- 181
           L  R+ + + +   TF+ E      F +   YG   + Y RS+I + +     + + R+ 
Sbjct: 174 LNERWQLLLATVEVTFHQELHDHSIFQIYSHYGAFMHFYVRSIITDLFKLIKDNKNTRIS 233

Query: 182 PWQARRRGTGGSAS 223
           PW A R G   +AS
Sbjct: 234 PWSAIRIGESRAAS 247



to top

>NGN2_MOUSE (P70447) Neurogenin 2 (Atonal protein homolog 4) (Helix-loop-helix|
           protein mATH-4A) (MATH4A)
          Length = 263

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/69 (28%), Positives = 26/69 (37%)
 Frame = +2

Query: 203 GTGGSASAPSTIWSKTNLLAASVKRTPSQLTLLDGSSHDFPASTDVPFTCTLSPHRMFRS 382
           G  G + +P + WS TN  A+S   T                    P++CTLSP      
Sbjct: 198 GASGDSPSPPSSWSCTNSPASSSNSTS-------------------PYSCTLSPASPGSD 238

Query: 383 KLYSPPPYP 409
             Y  PP P
Sbjct: 239 VDYWQPPPP 247



to top

>RESC_BACSU (P35162) Protein resC|
          Length = 352

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 9  LGRHLQIDFRCRFFLPPAHF 68
          +G+H    F CRFFLPP  F
Sbjct: 1  MGQHWNHPFYCRFFLPPRIF 20



to top

>YC81_CAEEL (Q19981) Hypothetical protein F33C8.1 precursor|
          Length = 1271

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +2

Query: 209 GGSASAPSTIWSKTNLLAASVKRTPSQLTLLDGSSHDFPASTDVPFTCTLSPHRMFRSKL 388
           G +    S +W+ +    +S  R      + DG+   F  S+ VPF  T+S    F S +
Sbjct: 582 GFNGKMKSDVWTLSPAKCSSATRPDECRLITDGTKCVFVDSSCVPFDPTVSYKSSFASMI 641

Query: 389 YSPPP 403
            S  P
Sbjct: 642 KSSTP 646



to top

>ZIM10_MOUSE (Q6P1E1) Retinoic acid-induced protein 17 (PIAS-like protein|
           Zimp10)
          Length = 1072

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 179 LPWQARRRGTGGSASAPSTIWSKTNLLAASVKRTP 283
           +PWQ       GS S  +T+W  TN   + V   P
Sbjct: 151 VPWQQNTNQPPGSLSVVTTVWGVTNTSQSQVLGNP 185



to top

>YVFO_BACSU (O07013) Hypothetical family 53 glycosyl hydrolase yvfO precursor|
           (EC 3.2.-.-)
          Length = 429

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 408 GYGGGEYNFDRNIRCGDKVQVNGTSVLA 325
           GYGGG  +  + I  G +   NG  VLA
Sbjct: 109 GYGGGNNDVQKAIEIGKRATANGMKVLA 136



to top

>ZIM10_HUMAN (Q9ULJ6) Retinoic acid-induced protein 17 (PIAS-like protein|
           Zimp10)
          Length = 1067

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 179 LPWQARRRGTGGSASAPSTIWSKTNLLAASVKRTP 283
           +PWQ       GS S  +T+W  TN   + V   P
Sbjct: 151 VPWQQNTNQPPGSLSVVTTVWGVTNTSQSQVLGNP 185



to top

>SMG7_HUMAN (Q92540) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)|
          Length = 1137

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 242  SKTNLLAASVKRTPSQLTLLDGS--SHDFPASTDVPFTCTLSPHRMFRSKLYSPPP 403
            SK  L  +   +  S  +L +G+  S   PAS+D     + SPH    S L S PP
Sbjct: 962  SKAELSPSMAPQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPP 1017



to top

>C3AR_CAVPO (O88680) C3a anaphylatoxin chemotactic receptor (C3a-R) (C3AR)|
          Length = 475

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
 Frame = +2

Query: 38  VPIFSTTCTFYLEYDTRCRF--------YLNYTYGCVKNGYFRSLINEQYHAHCRLPWQA 193
           +P+F    TF LE  T C +        YL+Y Y     GY             +LP + 
Sbjct: 155 IPVFVYRETFTLENHTICTYNFSPGSFDYLDYAYDRDAWGYGTP------DPIVQLPGEM 208

Query: 194 RRRGTGGSASAPSTIWSKTNLLAASVKRTPSQ 289
             R    S       WS T  L +   + PS+
Sbjct: 209 EHRSDPSSFQTQDGPWSVTTTLYSQTSQRPSE 240



to top

>SMG7_MOUSE (Q5RJH6) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)|
          Length = 1138

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 233  TIWSKTNLLAASVKRTPSQLTLLDGS--SHDFPASTDVPFTCTLSPHRMFRSKLYSPPP 403
            T  SK  L  +   +  S  +L +G+  S   PAS+D     + SPH    S L S PP
Sbjct: 960  TTSSKAELNPSVASQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPP 1018



to top

>ASK1_KLULA (Q6CTH8) DASH complex subunit ASK1 (Outer kinetochore protein ASK1)|
           (Associated with spindles and kinetochores protein 1)
          Length = 218

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 324 GKSCDDPSRSVSWDGVRFTEAAN-RFVFDQIVDGA 223
           G++C+D + S SW    F ++AN + V DQ V+ A
Sbjct: 43  GQTCEDITNSSSWLKEMFQQSANVQLVTDQAVESA 77



to top

>MTT8_THET8 (P29749) Modification methylase TthHB8I (EC 2.1.1.72)|
           (Adenine-specific methyltransferase TthHB8I) (M.TthHB8I)
          Length = 428

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
 Frame = +1

Query: 175 PFALASPPKRHGRVGE-------RAVDDLVEDEPVGRLGEAHAVPAHAPRRV 309
           P AL  PP   G V +        A D ++ + P G +GEA   P H  R V
Sbjct: 72  PHALDLPPWAEGVVADFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVLREV 123



to top

>UL16_HHV11 (P10200) Protein UL16|
          Length = 373

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 166 CSLPFA---LASPPKRHGRVGERAVDDLVEDEPVGRLGEAHAVPAHAP 300
           C+L FA    A+PP+      +   + L E+  VG L  A+ VPA  P
Sbjct: 142 CTLTFARIRAATPPEE---TPDPTTEQLAEEPVVGELDGAYLVPAKTP 186



to top

>TUSA_HAEDU (Q7VNY2) Sulfurtransferase tusA homolog (EC 2.8.1.-)|
          Length = 79

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 317 DFPAST-DVPFTCTLSPHRMFRSKLYSPP 400
           D PA+T D+P  C    H++ +SK  +PP
Sbjct: 42  DDPATTRDIPSFCEFMDHQLLKSKTDTPP 70



to top

>AT5G2_SHEEP (Q06056) ATP synthase lipid-binding protein, mitochondrial|
           precursor (EC 3.6.3.14) (ATP synthase proteolipid P2)
           (ATPase protein 9) (ATPase subunit C)
          Length = 143

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = +2

Query: 221 SAPSTIWSKTNLLAAS----VKRTPSQLTLLDGSSHDFPASTDVPFTCTLSPHRMFRSKL 388
           S PS I   + LL+ S    V R P  LT     SH   A    P T +L+P R F++  
Sbjct: 9   STPSLIRRTSTLLSRSLSAVVVRRPETLT---DESHSSLAVVPRPLTTSLTPSRSFQTSA 65

Query: 389 YS 394
            S
Sbjct: 66  IS 67



to top

>AT5G2_BOVIN (P07926) ATP synthase lipid-binding protein, mitochondrial|
           precursor (EC 3.6.3.14) (ATP synthase proteolipid P2)
           (ATPase protein 9) (ATPase subunit C)
          Length = 143

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +2

Query: 230 STIWSKTNLLAASVKRTPSQLTLLDGSSHDFPASTDVPFTCTLSPHRMFRSKLYS 394
           ST+ S++  L+A V R P  LT     SH   A    P T +L+P R F++   S
Sbjct: 18  STVLSRS--LSAVVVRRPETLT---DESHSSLAVVPRPLTTSLTPSRSFQTSAIS 67



to top

>PHSM_ECOLI (P00490) Maltodextrin phosphorylase (EC 2.4.1.1)|
          Length = 796

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 66  NVQVVEKIGTENLFVSG 16
           NV++ EK+G EN+F+ G
Sbjct: 661 NVEIAEKVGEENIFIFG 677



to top

>SYA_DESPS (Q6AQ16) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 882

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -2

Query: 366 CGDKVQVNGTSVLAGKSCDDPSRSVSWDGVRFTEAANR--FVFDQIVDGALADPPVP 202
           CG   +++    +    CD+P+ +V  D  RF E  N     F++  DG+L   P P
Sbjct: 168 CGPCSEIHIDQGVGSSPCDNPNCAVGCDCDRFLELWNLVFMQFNRAEDGSLTALPRP 224



to top

>SMYD1_MOUSE (P97443) SET and MYND domain-containing protein 1 (Zinc-finger|
           protein BOP) (m-BOP) (CD8b-opposite)
          Length = 485

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +2

Query: 59  CTFYLEYDTRCR--FYLNYTYGCVKNGYFRSLINEQYHAHCRLPWQARRRGTG 211
           C F    D  C+   +LN+   C     +  + NE      R+ W+  R GTG
Sbjct: 63  CKFAHYCDRTCQKDAWLNHKNECAAIKKYGKVPNENIRLAARIMWRVEREGTG 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,152,492
Number of Sequences: 219361
Number of extensions: 1191440
Number of successful extensions: 3357
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3356
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top