>NUS1_ASPOR (P24021) Nuclease S1 precursor (EC 3.1.30.1) (Endonuclease S1)|
           (Single-stranded-nucleate endonuclease)
           (Deoxyribonuclease S1)
          Length = 287

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 16/37 (43%), Positives = 25/37 (67%)
 Frame = -2

Query: 340 HGSNLEDEYFFKALPVVQKRIAQGGVRLAAILNRIFS 230
           + ++L  EY+ K+ PV ++ IA+ G RLAA L+ I S
Sbjct: 248 NSTDLSGEYYDKSQPVFEELIAKAGYRLAAWLDLIAS 284

>HMX3_MOUSE (P42581) Homeobox protein HMX3 (Homeobox protein Nkx-5.1)|
          Length = 458

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = +1

Query: 322 LLSWSHGQRPRTRGTTAPRSPPRTCQHKSSLEYNTLPIGSLLDTTRW 462
           L  W     PR          P+TC H S + Y  +P G++     W
Sbjct: 86  LSRWVSKASPRGSSLKHTAEAPQTCTHSSKIAYTLVPNGAVRPLLAW 132

>CPB2_CAEJA (Q6E3F0) Cytoplasmic polyadenylation element-binding protein 2|
          Length = 594

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 388 AEESAELSCPAYVGADHGSNLEDEYFFKALPVVQKRIAQ 272
           A ++ + SCP     +    +E++YFFK   +V++R+ Q
Sbjct: 32  AAKAKQRSCPVVEMEEDDEEMEEKYFFKQSHLVRQRLEQ 70

>NUP3_PENSQ (P24504) Nuclease PA3 (EC 3.1.3.6) (Endonuclease PA3)|
           (Deoxyribonuclease PA3)
          Length = 270

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -2

Query: 406 TCADKYAEESAELSC----PAYVGADHGSNLEDEYFFKALPVVQKRIAQGGVRLAAILNR 239
           T A ++A ++  L C    P    A    +L   Y+   +  ++ +IA+GG RLA  +N 
Sbjct: 203 TTATRWASDANALVCTVVMPHGAAALQTGDLYPTYYDSVIDTIELQIAKGGYRLANWINE 262

Query: 238 I 236
           I
Sbjct: 263 I 263

>NUP1_PENCI (P24289) Nuclease P1 (EC 3.1.30.1) (Endonuclease P1)|
           (Deoxyribonuclease P1)
          Length = 270

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -2

Query: 406 TCADKYAEESAELSC----PAYVGADHGSNLEDEYFFKALPVVQKRIAQGGVRLAAILNR 239
           T A ++A ++  L C    P    A    +L   Y+   +  ++ +IA+GG RLA  +N 
Sbjct: 203 TTATRWASDANALVCTVVMPHGAAALQTGDLYPTYYDSVIDTIELQIAKGGYRLANWINE 262

Query: 238 I 236
           I
Sbjct: 263 I 263

>FA47A_HUMAN (Q5JRC9) Protein FAM47A|
          Length = 778

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 268 HPERSSSERPAAL*RSTHLLSWSHGQRPRTRGTTAPRSPPRTCQHKSSL 414
           HPE   + R ++L          H Q P+TR T++ RS P   +  SSL
Sbjct: 479 HPEHPKTRRRSSL----------HSQPPKTRRTSSLRSEPPKTRRTSSL 517

>CELK_CLOTM (O68438) Cellulose 1,4-beta-cellobiosidase precursor (EC 3.2.1.91)|
          Length = 895

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -2

Query: 460 NEWCREENQWAACYTPTTTCADKY----AEESAELSCPAYVGADHGSNLED 320
           +++  +E  WAAC    TT  D+Y          L  PA +G + G+N ED
Sbjct: 557 DDYVGDEFYWAACELYVTTGKDEYKNYLMNSPHYLEMPAKMGENGGANGED 607

>XYLT_CIOIN (Q5QQ55) Xylosyltransferase (EC 2.4.2.26) (Peptide|
           O-xylosyltransferase)
          Length = 848

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 361 GTTAPRSPPRTCQHKSSLEYN 423
           GT  P+S PRTC+H+S   ++
Sbjct: 178 GTLFPKSMPRTCKHESKFTFD 198


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,803,583
Number of Sequences: 219361
Number of extensions: 1042778
Number of successful extensions: 2881
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2880
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)