>emb|AJ311603.1|HVU311603 Hordeum vulgare mRNA for putative nuclease (bnuc2 gene)
          Length = 1139

 Score =  176 bits (89), Expect = 4e-41
 Identities = 158/181 (87%)
 Strand = Plus / Minus

                                                                       
Query: 220 cgttcttcccactgaagatccggttgaggatcgccgccagcctgacgccaccctgagcga 279
           |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 911 cgttcttcccgctgaagatccggttgaggatcgccgccagcctgacgccgccctgagcga 852

                                                                       
Query: 280 tcctcttctgaacgaccggcagcgctttgaagaagtactcatcttctaagttggagccat 339
           ||| ||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| | |
Sbjct: 851 tccgcttctgaacgaccggcagcgccttgaagtagtactcatctcctaaggtggagtcct 792

                                                                       
Query: 340 ggtcagcgcccacgtacgcggggcacgacagctccgcgctctcctccgcgtacttgtcag 399
           | |   |||||  |||||||  ||| | |||| | || |||||||| |||||||||||||
Sbjct: 791 gcttgacgcccttgtacgcgtcgcaggccagcactgcactctcctcagcgtacttgtcag 732

            
Query: 400 c 400
           |
Sbjct: 731 c 731

>dbj|D83178.1| Hordeum vulgare mRNA for endonuclease, complete cds
          Length = 1180

 Score =  133 bits (67), Expect = 6e-28
 Identities = 91/99 (91%)
 Strand = Plus / Minus

                                                                       
Query: 225 ttcccactgaagatccggttgaggatcgccgccagcctgacgccaccctgagcgatcctc 284
           ||||| |||||||||||||||||||| ||||||||||| | ||| ||||| |||| ||||
Sbjct: 899 ttcccgctgaagatccggttgaggatggccgccagcctcaagcccccctgggcgagcctc 840

                                                  
Query: 285 ttctgaacgaccggcagcgctttgaagaagtactcatct 323
           ||||||||||||||||||||||||||| |||||||||||
Sbjct: 839 ttctgaacgaccggcagcgctttgaagtagtactcatct 801

>gb|AY108503.1| Zea mays PCO102923 mRNA sequence
          Length = 476

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                       
Query: 237 atccggttgaggatcgccgccagcctgacgccaccctgagcgatcctcttctgaacgacc 296
           |||| |||||||||||| |||||||||||||| || || ||||||||||||||||| |||
Sbjct: 105 atcctgttgaggatcgcggccagcctgacgcctccttgcgcgatcctcttctgaaccacc 46

                                      
Query: 297 ggcagcgctttgaagaagtactcatct 323
           ||||||||   ||||||||| ||||||
Sbjct: 45  ggcagcgcggcgaagaagtagtcatct 19

>ref|XM_474151.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 873

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 148/183 (80%)
 Strand = Plus / Minus

                                                                       
Query: 225 ttcccactgaagatccggttgaggatcgccgccagcctgacgccaccctgagcgatcctc 284
           ||||| ||||||||||||||||| || || || ||||| |||||||| ||||| ||||||
Sbjct: 854 ttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcctc 795

                                                                       
Query: 285 ttctgaacgaccggcagcgctttgaagaagtactcatcttctaagttggagccatggtca 344
           |||||||| || ||||| ||   |||||| || |||||||||||| ||||  | || |||
Sbjct: 794 ttctgaacaacaggcagggcagcgaagaaatagtcatcttctaaggtggattcttgctca 735

                                                                       
Query: 345 gcgcccacgtacgcggggcacgacagctccgcgctctcctccgcgtacttgtcagcacaa 404
            | ||| |||||||   |||||  ||||  || |||||||| |||||||| || ||||||
Sbjct: 734 acaccctcgtacgctttgcacgcgagctttgcactctcctcggcgtacttatcggcacaa 675

              
Query: 405 gtc 407
           |||
Sbjct: 674 gtc 672

>dbj|AK059436.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F11, full
           insert sequence
          Length = 484

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 148/183 (80%)
 Strand = Plus / Minus

                                                                       
Query: 225 ttcccactgaagatccggttgaggatcgccgccagcctgacgccaccctgagcgatcctc 284
           ||||| ||||||||||||||||| || || || ||||| |||||||| ||||| ||||||
Sbjct: 255 ttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcctc 196

                                                                       
Query: 285 ttctgaacgaccggcagcgctttgaagaagtactcatcttctaagttggagccatggtca 344
           |||||||| || ||||| ||   |||||| || |||||||||||| ||||  | || |||
Sbjct: 195 ttctgaacaacaggcagggcagcgaagaaatagtcatcttctaaggtggattcttgctca 136

                                                                       
Query: 345 gcgcccacgtacgcggggcacgacagctccgcgctctcctccgcgtacttgtcagcacaa 404
            | ||| |||||||   |||||  ||||  || |||||||| |||||||| || ||||||
Sbjct: 135 acaccctcgtacgctttgcacgcgagctttgcactctcctcggcgtacttatcggcacaa 76

              
Query: 405 gtc 407
           |||
Sbjct: 75  gtc 73

>dbj|AB028448.1| Hordeum vulgare Bnuc1 mRNA for nuclease I, complete cds
          Length = 1283

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                       
Query: 222 ttcttcccactgaagatccggttgaggatcgccgccagcctgacgccaccctgagcgatc 281
           |||||||||||||||||| |||| |||||| |||||||||| ||||| |||||||| |||
Sbjct: 933 ttcttcccactgaagatctggttaaggatcaccgccagcctcacgcctccctgagctatc 874

                  
Query: 282 ctcttct 288
           |||||||
Sbjct: 873 ctcttct 867

>dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F11, full
           insert sequence
          Length = 1146

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 93/110 (84%)
 Strand = Plus / Minus

                                                                       
Query: 225 ttcccactgaagatccggttgaggatcgccgccagcctgacgccaccctgagcgatcctc 284
           ||||| ||||||||||||||||| || || || ||||| |||||||| ||||| ||||||
Sbjct: 880 ttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcctc 821

                                                             
Query: 285 ttctgaacgaccggcagcgctttgaagaagtactcatcttctaagttgga 334
           |||||||| || ||||| ||   |||||| || |||||||||||| ||||
Sbjct: 820 ttctgaacaacaggcagggcagcgaagaaatagtcatcttctaaggtgga 771

>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06,
             complete sequence
          Length = 151506

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                         
Query: 225   ttcccactgaagatccggttgaggatcgccgccagcctgacgccaccctgagcgatcctc 284
             ||||| ||||||||||||||||| || || || ||||| |||||||| ||||| ||||||
Sbjct: 62465 ttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcctc 62406

                              
Query: 285   ttctgaacgaccggcag 301
             |||||||| || |||||
Sbjct: 62405 ttctgaacaacaggcag 62389

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                            
Query: 225      ttcccactgaagatccggttgaggatcgccgccagcctgacgccaccctgagcgatcctc 284
                ||||| ||||||||||||||||| || || || ||||| |||||||| ||||| ||||||
Sbjct: 33290204 ttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcctc 33290145

                                 
Query: 285      ttctgaacgaccggcag 301
                |||||||| || |||||
Sbjct: 33290144 ttctgaacaacaggcag 33290128

>emb|AL732538.6| Mouse DNA sequence from clone RP23-242O9 on chromosome 4, complete
              sequence
          Length = 172802

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 117    aatctctctaatcttattattgttcataa 145
              |||||||||| ||||||||||||||||||
Sbjct: 111585 aatctctctattcttattattgttcataa 111557

>emb|BX323086.4| Zebrafish DNA sequence from clone DKEY-170I11 in linkage group 20,
              complete sequence
          Length = 183026

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 118    atctctctaatcttattattgtt 140
              |||||||||||||||||||||||
Sbjct: 135212 atctctctaatcttattattgtt 135190

>emb|CR854846.8| Zebrafish DNA sequence from clone DKEY-228N9 in linkage group 11,
              complete sequence
          Length = 202364

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 118    atctctctaatcttattattgtt 140
              |||||||||||||||||||||||
Sbjct: 173013 atctctctaatcttattattgtt 172991

>emb|CR381700.6| Zebrafish DNA sequence from clone CH211-198F4 in linkage group 14,
              complete sequence
          Length = 203630

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 118    atctctctaatcttattattgt 139
              ||||||||||||||||||||||
Sbjct: 187260 atctctctaatcttattattgt 187281

>gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete sequence
          Length = 116601

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 124   ctaatcttattattgttcata 144
             |||||||||||||||||||||
Sbjct: 44829 ctaatcttattattgttcata 44849

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     ccttgcacaatgtccttcgt 177
               ||||||||||||||||||||
Sbjct: 1665417 ccttgcacaatgtccttcgt 1665436

>gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1528D07,
             complete sequence
          Length = 87592

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   ccttgcacaatgtccttcgt 177
             ||||||||||||||||||||
Sbjct: 73639 ccttgcacaatgtccttcgt 73658

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     ccttgcacaatgtccttcgt 177
               ||||||||||||||||||||
Sbjct: 1665415 ccttgcacaatgtccttcgt 1665434

>gb|AC154854.2| Mus musculus BAC clone RP23-23O4 from chromosome 16, complete sequence
          Length = 209970

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     attaatttacttcatctcat 21
             ||||||||||||||||||||
Sbjct: 54989 attaatttacttcatctcat 55008

>dbj|AK059624.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H06, full
           insert sequence
          Length = 683

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 158 ccttgcacaatgtccttcgt 177
           ||||||||||||||||||||
Sbjct: 513 ccttgcacaatgtccttcgt 494

>gb|AF112193.1|AF112193 Ictalurus punctatus strain Kansas XbaI element 1, complete sequence
          Length = 325

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 72  acatagtatagtactatgaa 91
           ||||||||||||||||||||
Sbjct: 208 acatagtatagtactatgaa 227

>emb|AL935203.12| Zebrafish DNA sequence from clone CH211-256A21 in linkage group 25,
              complete sequence
          Length = 163572

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 371    ctccgcgctctcctccgcgt 390
              ||||||||||||||||||||
Sbjct: 131298 ctccgcgctctcctccgcgt 131317

>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
             clone:P0043E01
          Length = 154128

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   ccttgcacaatgtccttcgt 177
             ||||||||||||||||||||
Sbjct: 77880 ccttgcacaatgtccttcgt 77899


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,165,410
Number of Sequences: 3902068
Number of extensions: 3165410
Number of successful extensions: 60708
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60587
Number of HSP's gapped (non-prelim): 121
length of query: 482
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 460
effective length of database: 17,147,199,772
effective search space: 7887711895120
effective search space used: 7887711895120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)