ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart54g04 |
|---|---|
| Clone Library Name | barley_pub |
>NUHM_ARATH (O22769) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 255 Score = 73.2 bits (178), Expect = 4e-13 Identities = 32/43 (74%), Positives = 34/43 (79%) Frame = -3 Query: 516 LRRGETPPRGTQNPERKNCGPAGGMTTLLGEPKPPPCRDLDAC 388 LR+GE PP GTQNP+R CGP GG TLLGEPKPP RDLDAC Sbjct: 213 LRKGEKPPHGTQNPKRIKCGPEGGNKTLLGEPKPPQFRDLDAC 255
>RS23_YEAST (P32827) 40S ribosomal protein S23 (S28) (YS14) (RP37)| Length = 145 Score = 30.4 bits (67), Expect = 3.0 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +2 Query: 194 MVTGRRVQLSDKRKLRQQQRSNRLSIVGHKKALRTTEIK-SPIGCSRH 334 M G+ L+ RKLR +R+NR + +KK L T K SP G S H Sbjct: 1 MGKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSH 48
>RS23_SACCA (Q6YIA2) 40S ribosomal protein S23| Length = 145 Score = 30.4 bits (67), Expect = 3.0 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +2 Query: 194 MVTGRRVQLSDKRKLRQQQRSNRLSIVGHKKALRTTEIK-SPIGCSRH 334 M G+ L+ RKLR +R+NR + +KK L T K SP G S H Sbjct: 1 MGKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSH 48
>RS23_SACBA (Q6YIA3) 40S ribosomal protein S23| Length = 145 Score = 30.4 bits (67), Expect = 3.0 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +2 Query: 194 MVTGRRVQLSDKRKLRQQQRSNRLSIVGHKKALRTTEIK-SPIGCSRH 334 M G+ L+ RKLR +R+NR + +KK L T K SP G S H Sbjct: 1 MGKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSH 48
>RS23_CANGA (Q6FLA8) 40S ribosomal protein S23| Length = 145 Score = 30.4 bits (67), Expect = 3.0 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +2 Query: 194 MVTGRRVQLSDKRKLRQQQRSNRLSIVGHKKALRTTEIK-SPIGCSRH 334 M G+ L+ RKLR +R+NR + +KK L T K SP G S H Sbjct: 1 MGKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSH 48
>NUHM_HUMAN (P19404) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 249 Score = 30.0 bits (66), Expect = 4.0 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = -3 Query: 516 LRRGETPPRGTQNPERKNCGPAGGMTTLLGEPKPP 412 L+ G+ P G ++ R +C PAGG+T+L PK P Sbjct: 208 LKAGKIPKPGPRSG-RFSCEPAGGLTSLTEPPKGP 241
>NUHM_BOVIN (P04394) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Polypeptide II) Length = 249 Score = 30.0 bits (66), Expect = 4.0 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = -3 Query: 516 LRRGETPPRGTQNPERKNCGPAGGMTTLLGEPKPP 412 L+ G+ P G ++ R +C PAGG+T+L PK P Sbjct: 208 LKAGKIPKPGPRSG-RFSCEPAGGLTSLTEPPKGP 241
>NUHM_RAT (P19234) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 248 Score = 30.0 bits (66), Expect = 4.0 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -3 Query: 516 LRRGETPPRGTQNPERKNCGPAGGMTTLLGEPKPP 412 LR G+ P G ++ R C PAGG+T+L PK P Sbjct: 207 LRAGKVPKPGPRSG-RFCCEPAGGLTSLTEPPKGP 240
>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1853 Score = 29.6 bits (65), Expect = 5.2 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 6/41 (14%) Frame = +2 Query: 404 LHGGGF-GSPSKVVIPPAGPQFFR-----SGFWVPRGGVSP 508 ++GGGF GSPS+ P P SG W P GG+SP Sbjct: 1489 IYGGGFAGSPSREFSPAHSPWNSGVTPNYSGPWSPTGGMSP 1529
>PESC_HUMAN (O00541) Pescadillo homolog 1| Length = 588 Score = 29.6 bits (65), Expect = 5.2 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Frame = +2 Query: 170 EQTKGKKEMVTGRRVQLSDKRKLRQQQRS--NRLSIVGHKKALRTTEIKSPIGCSRHTMR 343 ++ +GKK V ++L DK++L Q++ S RL+I+ KK + K G R Sbjct: 502 QRMEGKKPRVMAGTLKLEDKQRLAQEEESEAKRLAIMMMKKREKYLYQKIMFGKRRKIRE 561 Query: 344 AN 349 AN Sbjct: 562 AN 563
>FASD_ECOLI (P46000) Outer membrane usher protein fasD precursor| Length = 835 Score = 28.9 bits (63), Expect = 8.9 Identities = 20/59 (33%), Positives = 30/59 (50%) Frame = -1 Query: 194 SLFSPWFAPSSARLPTDKDSAIYSGAAVAKESFVSGIRIWGPGHTLGELIAVMLLLQCY 18 ++ PW RL DS I +GAAV + F+SGI++ G T A++ +Q Y Sbjct: 656 AILYPW------RLAIGSDSVI-NGAAVVETEFISGIKVRQGGETSLLGTAIVTSMQPY 707
>NUHM_MOUSE (Q9D6J6) NADH-ubiquinone oxidoreductase 24 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) Length = 248 Score = 28.9 bits (63), Expect = 8.9 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = -3 Query: 516 LRRGETPPRGTQNPERKNCGPAGGMTTLLGEPKPP 412 L+ G+ P G ++ R C PAGG+T+L PK P Sbjct: 207 LKAGKVPKPGPRSG-RFCCEPAGGLTSLTEPPKGP 240
>MMP19_HUMAN (Q99542) Matrix metalloproteinase-19 precursor (EC 3.4.24.-)| (MMP-19) (Matrix metalloproteinase RASI) (MMP-18) Length = 508 Score = 28.9 bits (63), Expect = 8.9 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +3 Query: 321 VVRDIQCEPTYLCACLQLKSKPSRHPDPCMGEVLALL 431 V+RD + E T L + ++PS PDPC E+ A++ Sbjct: 261 VIRDEEEEETELPTVPPVPTEPSPMPDPCSSELDAMM 297 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,157,933 Number of Sequences: 219361 Number of extensions: 1764666 Number of successful extensions: 4939 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4750 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4938 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
