>gb|BT016329.1| Zea mays clone Contig162 mRNA sequence
          Length = 1199

 Score =  155 bits (78), Expect = 2e-34
 Identities = 126/142 (88%)
 Strand = Plus / Minus

                                                                       
Query: 377 aagcaaacctagcaggcatccagatccctgcatgggggaggttttggctctcctagcaag 436
           ||||||||||||||||||||||||||||||||||| |||||||| ||||||||  |||||
Sbjct: 909 aagcaaacctagcaggcatccagatccctgcatggaggaggtttcggctctccgtgcaag 850

                                                                       
Query: 437 gtggtcatccctccagcagggccgcagtttttccgctctgggttctgggtgccacgaggg 496
           |||||  |||| || |||||||| |||||||| |||||||||| ||| || || ||||||
Sbjct: 849 gtggtgttccccccggcagggccacagttttttcgctctgggtgctgtgtacctcgaggg 790

                                 
Query: 497 ggtgtttctcctcttctcagca 518
           |||||||| |||||||| ||||
Sbjct: 789 ggtgtttcacctcttctaagca 768

>gb|AY106442.1| Zea mays PCO078493 mRNA sequence
          Length = 1289

 Score =  155 bits (78), Expect = 2e-34
 Identities = 126/142 (88%)
 Strand = Plus / Minus

                                                                       
Query: 377 aagcaaacctagcaggcatccagatccctgcatgggggaggttttggctctcctagcaag 436
           ||||||||||||||||||||||||||||||||||| |||||||| ||||||||  |||||
Sbjct: 917 aagcaaacctagcaggcatccagatccctgcatggaggaggtttcggctctccgtgcaag 858

                                                                       
Query: 437 gtggtcatccctccagcagggccgcagtttttccgctctgggttctgggtgccacgaggg 496
           |||||  |||| || |||||||| |||||||| |||||||||| ||| || || ||||||
Sbjct: 857 gtggtgttccccccggcagggccacagttttttcgctctgggtgctgtgtacctcgaggg 798

                                 
Query: 497 ggtgtttctcctcttctcagca 518
           |||||||| |||||||| ||||
Sbjct: 797 ggtgtttcacctcttctaagca 776

>dbj|AK099007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114B12, full
           insert sequence
          Length = 1147

 Score =  141 bits (71), Expect = 3e-30
 Identities = 125/143 (87%)
 Strand = Plus / Minus

                                                                       
Query: 376 aaagcaaacctagcaggcatccagatccctgcatgggggaggttttggctctcctagcaa 435
           ||||||||||||||| ||||| ||||||||||| || |||||||| ||||| ||  ||||
Sbjct: 887 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctcaccgtgcaa 828

                                                                       
Query: 436 ggtggtcatccctccagcagggccgcagtttttccgctctgggttctgggtgccacgagg 495
           ||||||  |||||||||||||||| |||||||||||||||||||  || ||||| |||||
Sbjct: 827 ggtggtattccctccagcagggccacagtttttccgctctgggtgttgtgtgccgcgagg 768

                                  
Query: 496 gggtgtttctcctcttctcagca 518
            || |||||||||||| ||||||
Sbjct: 767 aggggtttctcctcttttcagca 745

>dbj|AK061566.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-E10, full
           insert sequence
          Length = 1219

 Score =  141 bits (71), Expect = 3e-30
 Identities = 125/143 (87%)
 Strand = Plus / Minus

                                                                       
Query: 376 aaagcaaacctagcaggcatccagatccctgcatgggggaggttttggctctcctagcaa 435
           ||||||||||||||| ||||| ||||||||||| || |||||||| ||||| ||  ||||
Sbjct: 890 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctcaccgtgcaa 831

                                                                       
Query: 436 ggtggtcatccctccagcagggccgcagtttttccgctctgggttctgggtgccacgagg 495
           ||||||  |||||||||||||||| |||||||||||||||||||  || ||||| |||||
Sbjct: 830 ggtggtattccctccagcagggccacagtttttccgctctgggtgttgtgtgccgcgagg 771

                                  
Query: 496 gggtgtttctcctcttctcagca 518
            || |||||||||||| ||||||
Sbjct: 770 aggggtttctcctcttttcagca 748

>dbj|AK100226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048E09, full
           insert sequence
          Length = 1120

 Score =  133 bits (67), Expect = 6e-28
 Identities = 124/143 (86%)
 Strand = Plus / Minus

                                                                       
Query: 376 aaagcaaacctagcaggcatccagatccctgcatgggggaggttttggctctcctagcaa 435
           ||||||||||||||| ||||| ||||||||||| || |||||||| ||||| ||  ||||
Sbjct: 885 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctcaccgtgcaa 826

                                                                       
Query: 436 ggtggtcatccctccagcagggccgcagtttttccgctctgggttctgggtgccacgagg 495
           ||||||  ||| |||||||||||| |||||||||||||||||||  || ||||| |||||
Sbjct: 825 ggtggtattccttccagcagggccacagtttttccgctctgggtgttgtgtgccgcgagg 766

                                  
Query: 496 gggtgtttctcctcttctcagca 518
            || |||||||||||| ||||||
Sbjct: 765 aggggtttctcctcttttcagca 743

>ref|XM_475674.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 825

 Score =  123 bits (62), Expect = 6e-25
 Identities = 116/134 (86%)
 Strand = Plus / Minus

                                                                       
Query: 385 ctagcaggcatccagatccctgcatgggggaggttttggctctcctagcaaggtggtcat 444
           |||||| ||||| ||||||||||| || |||||||| ||||| ||  ||||||||||  |
Sbjct: 825 ctagcaagcatctagatccctgcacggaggaggtttcggctcaccgtgcaaggtggtatt 766

                                                                       
Query: 445 ccctccagcagggccgcagtttttccgctctgggttctgggtgccacgagggggtgtttc 504
           ||||||||||||||| |||||||||||||||||||  || ||||| ||||| || |||||
Sbjct: 765 ccctccagcagggccacagtttttccgctctgggtgttgtgtgccgcgaggaggggtttc 706

                         
Query: 505 tcctcttctcagca 518
           ||||||| ||||||
Sbjct: 705 tcctcttttcagca 692

>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0108E17, complete sequence
          Length = 139829

 Score =  119 bits (60), Expect = 9e-24
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                         
Query: 376   aaagcaaacctagcaggcatccagatccctgcatgggggaggttttggctctcctagcaa 435
             ||||||||||||||| ||||| ||||||||||| || |||||||| ||||| ||  ||||
Sbjct: 86071 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctcaccgtgcaa 86012

                                                         
Query: 436   ggtggtcatccctccagcagggccgcagtttttccgctctgggt 479
             ||||||  |||||||||||||||| |||||||||||||||||||
Sbjct: 86011 ggtggtattccctccagcagggccacagtttttccgctctgggt 85968

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  119 bits (60), Expect = 9e-24
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                            
Query: 376      aaagcaaacctagcaggcatccagatccctgcatgggggaggttttggctctcctagcaa 435
                ||||||||||||||| ||||| ||||||||||| || |||||||| ||||| ||  ||||
Sbjct: 25017218 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctcaccgtgcaa 25017159

                                                            
Query: 436      ggtggtcatccctccagcagggccgcagtttttccgctctgggt 479
                ||||||  |||||||||||||||| |||||||||||||||||||
Sbjct: 25017158 ggtggtattccctccagcagggccacagtttttccgctctgggt 25017115

>emb|BX539307.6| Zebrafish DNA sequence from clone DKEY-253D23 in linkage group 22,
             complete sequence
          Length = 183551

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 172   gcaaaccaaggggaaaaaagaga 194
             |||||||||||||||||||||||
Sbjct: 22001 gcaaaccaaggggaaaaaagaga 21979

>gb|U50066.1| Caenorhabditis elegans cosmid T14A8, complete sequence
          Length = 9170

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 279  acaagaaagctttgagaaca 298
            ||||||||||||||||||||
Sbjct: 7589 acaagaaagctttgagaaca 7608

>emb|AL441923.9| Human DNA sequence from clone RP11-104D21 on chromosome Xp11.21-11.23
             Contains a melanoma antigen pseudogene, a pseudogene
             similar to part of SAH (SA hypertension-associated homolog
             (rat)) and a the 3' end of a novel gene, complete sequence
          Length = 76656

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    tgtccaggaccccagattct 83
             ||||||||||||||||||||
Sbjct: 52983 tgtccaggaccccagattct 52964

>gb|AF238375.3| Homo sapiens chromosome 21 clone BAC 49B5 map 21q21, complete sequence
          Length = 166124

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 344    gccaacttatttgtgtgcttgctt 367
              |||||||| |||||||||||||||
Sbjct: 116671 gccaacttgtttgtgtgcttgctt 116648

>emb|CR389787.1| Gallus gallus finished cDNA, clone ChEST713n9
          Length = 855

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 226 caaaagaaagcttcgacaacaaca 249
           ||||||||||||| ||||||||||
Sbjct: 439 caaaagaaagctttgacaacaaca 462

>dbj|BS000057.1| Pan troglodytes chromosome 22 clone:RP43-020J03, map 22, complete
              sequences
          Length = 185342

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 344    gccaacttatttgtgtgcttgctt 367
              |||||||| |||||||||||||||
Sbjct: 111538 gccaacttgtttgtgtgcttgctt 111515

>gb|AC147627.6| Mus musculus BAC clone RP24-382F19 from Y, complete sequence
          Length = 226237

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    cagctccagaatatatagca 135
              ||||||||||||||||||||
Sbjct: 200942 cagctccagaatatatagca 200923

>dbj|AP001677.1| Homo sapiens genomic DNA, chromosome 21q, section 21/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 344    gccaacttatttgtgtgcttgctt 367
              |||||||| |||||||||||||||
Sbjct: 304239 gccaacttgtttgtgtgcttgctt 304216

>gb|AC116556.14| Mus musculus strain C57BL/6J chromosome 8 clone rp23-184i13, complete
              sequence
          Length = 239958

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 350    ttatttgtgtgcttgcttgc 369
              ||||||||||||||||||||
Sbjct: 172254 ttatttgtgtgcttgcttgc 172273

>gb|AC140919.2| Mus musculus BAC clone RP24-510L10 from 1, complete sequence
          Length = 159472

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 350    ttatttgtgtgcttgcttgc 369
              ||||||||||||||||||||
Sbjct: 146961 ttatttgtgtgcttgcttgc 146980

>gb|AC173476.2| Mus musculus BAC clone RP24-335D7 from chromosome 12, complete sequence
          Length = 182245

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    cagctccagaatatatagca 135
              ||||||||||||||||||||
Sbjct: 109755 cagctccagaatatatagca 109736

>dbj|AP001256.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B732H1,
             LL56-APP region, complete sequence
          Length = 204699

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 344   gccaacttatttgtgtgcttgctt 367
             |||||||| |||||||||||||||
Sbjct: 48660 gccaacttgtttgtgtgcttgctt 48637


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,871,970
Number of Sequences: 3902068
Number of extensions: 4871970
Number of successful extensions: 89024
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88956
Number of HSP's gapped (non-prelim): 68
length of query: 518
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 495
effective length of database: 17,143,297,704
effective search space: 8485932363480
effective search space used: 8485932363480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)