>SPB1_ASPFU (Q4WVH3) AdoMet-dependent rRNA methyltransferase spb1 (EC 2.1.1.-)|
           (2'-O-ribose RNA methyltransferase)
           (S-adenosyl-L-methionine-dependent methyltransferase)
          Length = 795

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +3

Query: 246 KYRQKSYSKKEDERRRSTRAKIRRVINTRALIRTVLSSAAQHLVPGADGG-----RANMD 410
           + ++K  +K++ ERR+    K + +I  +  + T +    + L PG D       R   D
Sbjct: 365 RLQEKESAKRKKERRKENEKKRKEIIRMQMHMTTPMDIGMEQLGPGGDDATFSLKRVERD 424

Query: 411 GCMD 422
           G  D
Sbjct: 425 GARD 428

>CCNL1_XENLA (Q6GN15) Cyclin-L1|
          Length = 496

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 150 TRTTHTSFSRSPTRHHEQKRRSR*CTLYICHIKYRQKSYSK 272
           +RT   S S SP RH+  +RRSR  T Y    + R +S+S+
Sbjct: 370 SRTKSRSRSHSPRRHYNNRRRSRSGT-YSSRSRSRSRSHSE 409

>MATK_BATMA (Q5VH50) Maturase K (Intron maturase)|
          Length = 499

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
 Frame = +2

Query: 56  FTSGANLFY---------IVPIYYYISR*TMVQGEEIIRMYKDNTHQLLSVTNKAPRAE- 205
           F+   NL+Y         IV I + I   + ++G+E+++     +H L S+ +  P  E 
Sbjct: 84  FSHNKNLYYQIISVVLAVIVEIPFSIRFISSLEGKELVK-----SHNLQSIHSIFPFLED 138

Query: 206 --APLTLVYSVHMPHQISSKILLQERR 280
             + L  V +V +PH I  +ILLQ  R
Sbjct: 139 KFSHLNYVLNVLIPHPIHLEILLQTLR 165

>RPOB_PSEHT (Q3ILP9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1341

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 261 SYSKKEDERRRSTRAKIRRVINTRALIRTVLSSAAQHLVPGADG 392
           +YS  E +R R    K  +V++   L+ T L S  + LVP ADG
Sbjct: 2   AYSYSEKKRIRKDFGKRPQVLDIPFLLSTQLKSFKKFLVPDADG 45

>VE2_HPV20 (P50766) Regulatory protein E2|
          Length = 497

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +3

Query: 117 RWYKGRK*SVCTRTTHTSFSRSPTRHHEQKRRSR*CTLYICHIKYRQKSYSKKEDERRRS 296
           R Y  R  S   RTT T   R      + K RSR         ++R +S S+ E  RRRS
Sbjct: 244 RRYGRRPSSRTRRTTQTRQRRRSRSKSKSKSRSR------SRSRHRSRSRSRSESPRRRS 297

Query: 297 ---TRAKIRRVINTRALIRTVLSS 359
              +R+  R  +  RA+  T  ++
Sbjct: 298 RYRSRSGSRGRVALRAITTTTTTT 321

>ENC_DROME (Q8MSX1) Protein encore|
          Length = 1818

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 124  TRGGNNPYVQGQHTPASLGHQQGTTSRSAAHASVLCTYATSNIVKNPTP 270
            T GG + +    +TP+S+ H  G    SA  A ++   A S    +  P
Sbjct: 1238 TPGGGSIHYNPSYTPSSVAHAGGAHHPSAGSAQIIAAPAASTTTYHALP 1286


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,689,138
Number of Sequences: 219361
Number of extensions: 1114494
Number of successful extensions: 3218
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3213
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)