ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart54f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YKY1_SCHPO (O13796) Hypothetical protein C1142.01 in chromosome I 28 5.1
2SDK1_CHICK (Q8AV58) Protein sidekick-1 precursor 28 6.7
3NU5M_LOCMI (Q36428) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 28 6.7

>YKY1_SCHPO (O13796) Hypothetical protein C1142.01 in chromosome I|
          Length = 667

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 7   PVVEQADPEVATNKRKSNTTKSPKKFAKSQREGNKE 114
           P+VE   P V+TNK+  N  K  K+  K +  G ++
Sbjct: 81  PLVEGESPIVSTNKKAKNKKKKKKQQKKKKVTGKRD 116



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>SDK1_CHICK (Q8AV58) Protein sidekick-1 precursor|
          Length = 2169

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 103  LPAGTWQTFSETLLYYSFSCLLQ 35
            LP G WQT+S ++ + + SC+++
Sbjct: 1471 LPNGDWQTYSSSISHEATSCIIE 1493



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>NU5M_LOCMI (Q36428) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 572

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 139 WSRFNIFMFLYYLPAGTWQTFSETLLYYSFS 47
           W  F IF FLY+   G   ++S  L YYS S
Sbjct: 370 WVNFFIF-FLYFFSTGLTASYSFRLFYYSMS 399


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.128    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,749,287
Number of Sequences: 219361
Number of extensions: 380663
Number of successful extensions: 1094
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 80,573,946
effective HSP length: 38
effective length of database: 72,238,228
effective search space used: 1733717472
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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