ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart54f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
2dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
3dbj|AP002914.2| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
4dbj|AK100034.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
5ref|NM_202428.1| Arabidopsis thaliana OPR1; 12-oxophytodienoate ... 48 0.011
6ref|NM_106318.3| Arabidopsis thaliana OPR1; 12-oxophytodienoate ... 48 0.011
7gb|BT020365.1| Arabidopsis thaliana At1g76680 gene, complete cds 48 0.011
8gb|AY921645.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR8... 48 0.011
9emb|Y10617.1|AT12OXOPR A.thaliana mRNA for 12-oxo-phytodienoate ... 48 0.011
10gb|AY074874.1| Arabidopsis thaliana At1g76680/F28O16_5 mRNA, com... 48 0.011
11gb|AC010718.5|AC010718 Arabidopsis thaliana chromosome 1 BAC F28... 48 0.011
12gb|AY087801.1| Arabidopsis thaliana clone 38527 mRNA, complete s... 48 0.011
13dbj|AK106409.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.011
14gb|AY108381.1| Zea mays PCO088244 mRNA sequence 48 0.011
15gb|U92460.1|ATU92460 Arabidopsis thaliana 12-oxophytodienoate re... 48 0.011
16gb|AC174930.1| Oryza sativa (japonica cultivar-group) BAC clone ... 48 0.011
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.17
18dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.17
19dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.17
20dbj|AK108079.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.17
21dbj|AK073836.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.17
22dbj|AK067218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.17
23gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone ... 44 0.17
24dbj|AB030705.1| Lithospermum erythrorhizon mRNA for LEDI-5a prot... 42 0.67
25emb|AL772386.4| Mouse DNA sequence from clone RP23-89G22 on chro... 42 0.67
26ref|NM_106319.3| Arabidopsis thaliana OPR2; 12-oxophytodienoate ... 40 2.6
27ref|NM_106320.2| Arabidopsis thaliana heat shock protein binding... 40 2.6
28gb|AY921644.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR7... 40 2.6
29gb|AY921642.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR5... 40 2.6
30gb|BT025251.1| Arabidopsis thaliana At1g76690 mRNA, complete cds 40 2.6
31gb|AC125050.6| Mus musculus BAC clone RP23-372I18 from chromosom... 40 2.6
32emb|AL121770.1|SPAC821 S.pombe chromosome I cosmid c821 40 2.6
33emb|BX814348.1|CNS0ABZY Arabidopsis thaliana Full-length cDNA Co... 40 2.6
34emb|BX816752.1|CNS0ABN0 Arabidopsis thaliana Full-length cDNA Co... 40 2.6
35emb|BX816748.1|CNS0ABM5 Arabidopsis thaliana Full-length cDNA Co... 40 2.6
36dbj|AK117738.1| Arabidopsis thaliana At1g76690 mRNA for putative... 40 2.6
37gb|AY106967.1| Zea mays PCO088243 mRNA sequence 40 2.6
38gb|AF009512.1|AF009512 Schizosaccharomyces pombe protein kinase ... 40 2.6
39gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complet... 40 2.6 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 139      cctcttcggcaggtcagggtttgccaggaagagccgccc 177
                ||||| ||||||||||||||| |||||||| ||||||||
Sbjct: 15167404 cctctccggcaggtcagggttggccaggaacagccgccc 15167442
to top
>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0043B10
          Length = 167399

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                     
Query: 139    cctcttcggcaggtcagggtttgccaggaagagccgccc 177
              ||||| ||||||||||||||| |||||||| ||||||||
Sbjct: 139370 cctctccggcaggtcagggttggccaggaacagccgccc 139408
to top
>dbj|AP002914.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0493G01
          Length = 167587

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 139   cctcttcggcaggtcagggtttgccaggaagagccgccc 177
             ||||| ||||||||||||||| |||||||| ||||||||
Sbjct: 20777 cctctccggcaggtcagggttggccaggaacagccgccc 20815
to top
>dbj|AK100034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149N02, full
            insert sequence
          Length = 2710

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 139  cctcttcggcaggtcagggtttgccaggaagagccgccc 177
            ||||| ||||||||||||||| |||||||| ||||||||
Sbjct: 2453 cctctccggcaggtcagggttggccaggaacagccgccc 2415
to top
>ref|NM_202428.1| Arabidopsis thaliana OPR1; 12-oxophytodienoate reductase AT1G76680
            (OPR1) transcript variant AT1G76680.2 mRNA, complete cds
          Length = 1460

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 56   gggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgt 99
            ||||| ||||||||||||||||| ||||| ||  ||||||||||
Sbjct: 1242 gggtaatcggtgtaaccgacgactggatcagaagtgtaaaacgt 1199
to top
>ref|NM_106318.3| Arabidopsis thaliana OPR1; 12-oxophytodienoate reductase AT1G76680
            (OPR1) transcript variant AT1G76680.1 mRNA, complete cds
          Length = 1451

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 56   gggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgt 99
            ||||| ||||||||||||||||| ||||| ||  ||||||||||
Sbjct: 1233 gggtaatcggtgtaaccgacgactggatcagaagtgtaaaacgt 1190
to top
>gb|BT020365.1| Arabidopsis thaliana At1g76680 gene, complete cds
          Length = 1119

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 56   gggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgt 99
            ||||| ||||||||||||||||| ||||| ||  ||||||||||
Sbjct: 1097 gggtaatcggtgtaaccgacgactggatcagaagtgtaaaacgt 1054
to top
>gb|AY921645.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR8) mRNA, complete cds
          Length = 1529

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 53   aacgggtagtcggtgtaaccgacgacgggatc 84
            ||||||||||| |||||||| |||||||||||
Sbjct: 1269 aacgggtagtccgtgtaaccaacgacgggatc 1238
to top
>emb|Y10617.1|AT12OXOPR A.thaliana mRNA for 12-oxo-phytodienoate reductase
          Length = 1311

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 56   gggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgt 99
            ||||| ||||||||||||||||| ||||| ||  ||||||||||
Sbjct: 1162 gggtaatcggtgtaaccgacgactggatcagaagtgtaaaacgt 1119
to top
>gb|AY074874.1| Arabidopsis thaliana At1g76680/F28O16_5 mRNA, complete cds
          Length = 1252

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 56   gggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgt 99
            ||||| ||||||||||||||||| ||||| ||  ||||||||||
Sbjct: 1167 gggtaatcggtgtaaccgacgactggatcagaagtgtaaaacgt 1124
to top
>gb|AC010718.5|AC010718 Arabidopsis thaliana chromosome 1 BAC F28O16 genomic sequence, complete
             sequence
          Length = 87684

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 56    gggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgt 99
             ||||| ||||||||||||||||| ||||| ||  ||||||||||
Sbjct: 15021 gggtaatcggtgtaaccgacgactggatcagaagtgtaaaacgt 14978



 Score = 40.1 bits (20), Expect = 2.6
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 56    gggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgt 99
             ||||| ||||||||||| ||||| ||||| ||  ||||||||||
Sbjct: 17105 gggtaatcggtgtaacccacgacaggatcagaagtgtaaaacgt 17062
to top
>gb|AY087801.1| Arabidopsis thaliana clone 38527 mRNA, complete sequence
          Length = 1280

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 56   gggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgt 99
            ||||| ||||||||||||||||| ||||| ||  ||||||||||
Sbjct: 1167 gggtaatcggtgtaaccgacgactggatcagaagtgtaaaacgt 1124
to top
>dbj|AK106409.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-H07, full
            insert sequence
          Length = 1360

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 53   aacgggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgtc 100
            ||||||||||||||||| ||| ||||||| |||| | |||| ||||||
Sbjct: 1150 aacgggtagtcggtgtagccggcgacggggtcggcggtgtagaacgtc 1103
to top
>gb|AY108381.1| Zea mays PCO088244 mRNA sequence
          Length = 694

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 53  aacgggtagtcggtgtaaccgacgacgggatc 84
           ||||||||||| |||||||| |||||||||||
Sbjct: 434 aacgggtagtccgtgtaaccaacgacgggatc 403
to top
>gb|U92460.1|ATU92460 Arabidopsis thaliana 12-oxophytodienoate reductase OPR1 and
            12-oxophytodienoate reductase OPR2 genes, complete cds
          Length = 7079

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 56   gggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgt 99
            ||||| ||||||||||||||||| ||||| ||  ||||||||||
Sbjct: 4615 gggtaatcggtgtaaccgacgactggatcagaagtgtaaaacgt 4572



 Score = 40.1 bits (20), Expect = 2.6
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 56   gggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgt 99
            ||||| ||||||||||| ||||| ||||| ||  ||||||||||
Sbjct: 6699 gggtaatcggtgtaacccacgacaggatcagaagtgtaaaacgt 6656
to top
>gb|AC174930.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBa0043H01, from
             chromosome 4, complete sequence
          Length = 15426

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 53    aacgggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgtc 100
             ||||||||||||||||| ||| ||||||| |||| | |||| ||||||
Sbjct: 12779 aacgggtagtcggtgtagccggcgacggggtcggcggtgtagaacgtc 12826
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                           
Query: 130     gagctctagcctcttcggcaggtcagggtttgccaggaagagccgcccaaaagagacgag 189
               |||||| | |||||| ||||| ||||| || |||| |||||||| |||| | | ||||||
Sbjct: 5889728 gagctcgaacctcttgggcagatcaggattcgccaagaagagcctcccataggcgacgag 5889787

                     
Query: 190     gtcggc 195
               ||||||
Sbjct: 5889788 gtcggc 5889793
to top
>dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0024N18
          Length = 128739

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                         
Query: 130   gagctctagcctcttcggcaggtcagggtttgccaggaagagccgcccaaaagagacgag 189
             |||||| | |||||| ||||| ||||| || |||| |||||||| |||| | | ||||||
Sbjct: 11380 gagctcgaacctcttgggcagatcaggattcgccaagaagagcctcccataggcgacgag 11439

                   
Query: 190   gtcggc 195
             ||||||
Sbjct: 11440 gtcggc 11445
to top
>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0537F07
          Length = 147724

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                         
Query: 130   gagctctagcctcttcggcaggtcagggtttgccaggaagagccgcccaaaagagacgag 189
             |||||| | |||||| ||||| ||||| || |||| |||||||| |||| | | ||||||
Sbjct: 90503 gagctcgaacctcttgggcagatcaggattcgccaagaagagcctcccataggcgacgag 90562

                   
Query: 190   gtcggc 195
             ||||||
Sbjct: 90563 gtcggc 90568
to top
>dbj|AK108079.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E09, full
            insert sequence
          Length = 1517

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                        
Query: 130  gagctctagcctcttcggcaggtcagggtttgccaggaagagccgcccaaaagagacgag 189
            |||||| | |||||| ||||| ||||| || |||| |||||||| |||| | | ||||||
Sbjct: 1180 gagctcgaacctcttgggcagatcaggattcgccaagaagagcctcccataggcgacgag 1121

                  
Query: 190  gtcggc 195
            ||||||
Sbjct: 1120 gtcggc 1115
to top
>dbj|AK073836.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069H04, full
            insert sequence
          Length = 2314

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 139  cctcttcggcaggtcagggtttgccaggaa 168
            |||| ||||||||||||| |||||||||||
Sbjct: 1981 cctcctcggcaggtcaggatttgccaggaa 1952
to top
>dbj|AK067218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098J23, full
            insert sequence
          Length = 2420

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 139  cctcttcggcaggtcagggtttgccaggaa 168
            |||| ||||||||||||| |||||||||||
Sbjct: 2087 cctcctcggcaggtcaggatttgccaggaa 2058
to top
>gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from
            chromosome 4, complete sequence
          Length = 90825

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 139  cctcttcggcaggtcagggtttgccaggaa 168
            |||| ||||||||||||| |||||||||||
Sbjct: 3632 cctcctcggcaggtcaggatttgccaggaa 3661
to top
>dbj|AB030705.1| Lithospermum erythrorhizon mRNA for LEDI-5a protein, complete cds
          Length = 1454

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 49   aagaaacgggtagtcggtgtaaccgacgacggg 81
            |||||| |||||||||||||| ||||| |||||
Sbjct: 1139 aagaaatgggtagtcggtgtagccgacaacggg 1107
to top
>emb|AL772386.4| Mouse DNA sequence from clone RP23-89G22 on chromosome 15, complete
             sequence
          Length = 149807

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 148   caggtcagggtttgccaggaa 168
             |||||||||||||||||||||
Sbjct: 70558 caggtcagggtttgccaggaa 70578
to top
>ref|NM_106319.3| Arabidopsis thaliana OPR2; 12-oxophytodienoate reductase AT1G76690
            (OPR2) mRNA, complete cds
          Length = 1573

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 56   gggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgt 99
            ||||| ||||||||||| ||||| ||||| ||  ||||||||||
Sbjct: 1189 gggtaatcggtgtaacccacgacaggatcagaagtgtaaaacgt 1146
to top
>ref|NM_106320.2| Arabidopsis thaliana heat shock protein binding / unfolded protein
            binding AT1G76700 mRNA, complete cds
          Length = 2266

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                        
Query: 56   gggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgt 99
            ||||| ||||||||||| ||||| ||||| ||  ||||||||||
Sbjct: 1709 gggtaatcggtgtaacccacgacaggatcagaagtgtaaaacgt 1752
to top
>gb|AY921644.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR7) mRNA, complete cds
          Length = 1594

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 58   gtagtcggtgtaaccgacgacggg 81
            |||||| |||||||||||||||||
Sbjct: 1400 gtagtccgtgtaaccgacgacggg 1377
to top
>gb|AY921642.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR5) mRNA, complete cds
          Length = 1533

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 59/72 (81%)
 Strand = Plus / Minus

                                                                        
Query: 49   aagaaacgggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgtcatcctgtt 108
            |||||| |||||||| ||||| || || || ||||| | ||||||||||||    |||||
Sbjct: 1270 aagaaatgggtagtcagtgtatccaacaaccggatcagggatgtaaaacgtgtctctgtt 1211

                        
Query: 109  gtacttattaag 120
            |||||| |||||
Sbjct: 1210 gtacttgttaag 1199
to top
>gb|BT025251.1| Arabidopsis thaliana At1g76690 mRNA, complete cds
          Length = 1125

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 56   gggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgt 99
            ||||| ||||||||||| ||||| ||||| ||  ||||||||||
Sbjct: 1103 gggtaatcggtgtaacccacgacaggatcagaagtgtaaaacgt 1060
to top
>gb|AC125050.6| Mus musculus BAC clone RP23-372I18 from chromosome 7, complete sequence
          Length = 199810

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tggttcaatgacacatcaag 47
             ||||||||||||||||||||
Sbjct: 70383 tggttcaatgacacatcaag 70364
to top
>emb|AL121770.1|SPAC821 S.pombe chromosome I cosmid c821
          Length = 35452

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   catcctgttgtacttattaa 119
             ||||||||||||||||||||
Sbjct: 33192 catcctgttgtacttattaa 33173
to top
>emb|BX814348.1|CNS0ABZY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB69ZE10 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1221

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 56   gggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgt 99
            ||||| ||||||||||| ||||| ||||| ||  ||||||||||
Sbjct: 1156 gggtaatcggtgtaaccaacgactggatcagaagtgtaaaacgt 1113
to top
>emb|BX816752.1|CNS0ABN0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH66ZH10 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1296

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 56   gggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgt 99
            ||||| ||||||||||| ||||| ||||| ||  ||||||||||
Sbjct: 1189 gggtaatcggtgtaacccacgacaggatcagaagtgtaaaacgt 1146
to top
>emb|BX816748.1|CNS0ABM5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH66ZG08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1226

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 56   gggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgt 99
            ||||| ||||||||||| ||||| ||||| ||  ||||||||||
Sbjct: 1142 gggtaatcggtgtaacccacgacaggatcagaagtgtaaaacgt 1099
to top
>dbj|AK117738.1| Arabidopsis thaliana At1g76690 mRNA for putative 12-oxophytodienoate
            reductase (OPR2), complete cds, clone: RAFL17-42-I17
          Length = 1313

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 56   gggtagtcggtgtaaccgacgacgggatcggagatgtaaaacgt 99
            ||||| ||||||||||| ||||| ||||| ||  ||||||||||
Sbjct: 1163 gggtaatcggtgtaacccacgacaggatcagaagtgtaaaacgt 1120
to top
>gb|AY106967.1| Zea mays PCO088243 mRNA sequence
          Length = 765

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 58  gtagtcggtgtaaccgacgacggg 81
           |||||| |||||||||||||||||
Sbjct: 571 gtagtccgtgtaaccgacgacggg 548
to top
>gb|AF009512.1|AF009512 Schizosaccharomyces pombe protein kinase Orb6p (orb6) gene, complete
            cds
          Length = 2344

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  catcctgttgtacttattaa 119
            ||||||||||||||||||||
Sbjct: 2289 catcctgttgtacttattaa 2270
to top
>gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complete sequence
          Length = 190414

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     tggttcaatgacacatcaag 47
              ||||||||||||||||||||
Sbjct: 156206 tggttcaatgacacatcaag 156187


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,385,389
Number of Sequences: 3902068
Number of extensions: 1385389
Number of successful extensions: 107756
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 107616
Number of HSP's gapped (non-prelim): 140
length of query: 209
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 187
effective length of database: 17,147,199,772
effective search space: 3206526357364
effective search space used: 3206526357364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top