>ref|XM_477795.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 804

 Score =  115 bits (58), Expect = 1e-22
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                       
Query: 258 ggtatctccttgcagggctgcgactccttcgccttctggaacaagacgctgccgtccttg 317
           |||||||||||||||||||| | |||||||||||||||||| ||||||   || ||||| 
Sbjct: 743 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacggaaccatccttt 684

                                                                       
Query: 318 acatcccactcggggtgttcctctgcgatgtactgctgcagttccttgtcggagctgaac 377
           || ||||| || ||||| ||||||||||||||||| |||| ||| ||||| |||||||||
Sbjct: 683 acctcccattcagggtgctcctctgcgatgtactggtgcaattctttgtcagagctgaac 624

             
Query: 378 at 379
           ||
Sbjct: 623 at 622

>dbj|AK101316.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034D03, full
           insert sequence
          Length = 1218

 Score =  115 bits (58), Expect = 1e-22
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                       
Query: 258 ggtatctccttgcagggctgcgactccttcgccttctggaacaagacgctgccgtccttg 317
           |||||||||||||||||||| | |||||||||||||||||| ||||||   || ||||| 
Sbjct: 823 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacggaaccatccttt 764

                                                                       
Query: 318 acatcccactcggggtgttcctctgcgatgtactgctgcagttccttgtcggagctgaac 377
           || ||||| || ||||| ||||||||||||||||| |||| ||| ||||| |||||||||
Sbjct: 763 acctcccattcagggtgctcctctgcgatgtactggtgcaattctttgtcagagctgaac 704

             
Query: 378 at 379
           ||
Sbjct: 703 at 702

>dbj|AK061408.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A10, full
           insert sequence
          Length = 1053

 Score =  115 bits (58), Expect = 1e-22
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                       
Query: 258 ggtatctccttgcagggctgcgactccttcgccttctggaacaagacgctgccgtccttg 317
           |||||||||||||||||||| | |||||||||||||||||| ||||||   || ||||| 
Sbjct: 822 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacggaaccatccttt 763

                                                                       
Query: 318 acatcccactcggggtgttcctctgcgatgtactgctgcagttccttgtcggagctgaac 377
           || ||||| || ||||| ||||||||||||||||| |||| ||| ||||| |||||||||
Sbjct: 762 acctcccattcagggtgctcctctgcgatgtactggtgcaattctttgtcagagctgaac 703

             
Query: 378 at 379
           ||
Sbjct: 702 at 701

>dbj|AK061383.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H08, full
           insert sequence
          Length = 1230

 Score =  115 bits (58), Expect = 1e-22
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                       
Query: 258 ggtatctccttgcagggctgcgactccttcgccttctggaacaagacgctgccgtccttg 317
           |||||||||||||||||||| | |||||||||||||||||| ||||||   || ||||| 
Sbjct: 834 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacggaaccatccttt 775

                                                                       
Query: 318 acatcccactcggggtgttcctctgcgatgtactgctgcagttccttgtcggagctgaac 377
           || ||||| || ||||| ||||||||||||||||| |||| ||| ||||| |||||||||
Sbjct: 774 acctcccattcagggtgctcctctgcgatgtactggtgcaattctttgtcagagctgaac 715

             
Query: 378 at 379
           ||
Sbjct: 714 at 713

>dbj|AB037153.1| Oryza sativa (japonica cultivar-group) OsRPN12 mRNA for 26S
           proteasome regulatory particle non-ATPase subunit12,
           complete cds
          Length = 1063

 Score =  115 bits (58), Expect = 1e-22
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                       
Query: 258 ggtatctccttgcagggctgcgactccttcgccttctggaacaagacgctgccgtccttg 317
           |||||||||||||||||||| | |||||||||||||||||| ||||||   || ||||| 
Sbjct: 818 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacggaaccatccttt 759

                                                                       
Query: 318 acatcccactcggggtgttcctctgcgatgtactgctgcagttccttgtcggagctgaac 377
           || ||||| || ||||| ||||||||||||||||| |||| ||| ||||| |||||||||
Sbjct: 758 acctcccattcagggtgctcctctgcgatgtactggtgcaattctttgtcagagctgaac 699

             
Query: 378 at 379
           ||
Sbjct: 698 at 697

>gb|AY103818.1| Zea mays PCO124949 mRNA sequence
          Length = 1251

 Score =  105 bits (53), Expect = 1e-19
 Identities = 164/201 (81%)
 Strand = Plus / Minus

                                                                       
Query: 261 atctccttgcagggctgcgactccttcgccttctggaacaagacgctgccgtccttgaca 320
           ||||||||||||||||| |||||||||||||||||||| |||||    |||| ||| |  
Sbjct: 948 atctccttgcagggctgtgactccttcgccttctggaagaagacagcaccgttcttaatc 889

                                                                       
Query: 321 tcccactcggggtgttcctctgcgatgtactgctgcagttccttgtcggagctgaacata 380
           ||||| || ||||| ||||| | ||||||||  ||||| || | ||| || |||||||||
Sbjct: 888 tcccattccgggtgctcctcagtgatgtactcgtgcagatcttggtcagaactgaacata 829

                                                                       
Query: 381 aacatctgcttcgcatcgcttattgacaggtaatcatatcccttctcgctgcacccagct 440
           | ||| ||||| ||||| || |  || ||  ||||||| ||||| |||||||||||||| 
Sbjct: 828 agcatttgctttgcatcactcacagatagagaatcataccccttttcgctgcacccagcg 769

                                
Query: 441 atctcgtctctaaccgttttg 461
           ||||| |||||||| ||||||
Sbjct: 768 atctcatctctaactgttttg 748

>gb|BT016262.1| Zea mays clone Contig95 mRNA sequence
          Length = 1020

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 163/201 (81%)
 Strand = Plus / Minus

                                                                       
Query: 261 atctccttgcagggctgcgactccttcgccttctggaacaagacgctgccgtccttgaca 320
           ||||||||||||||||| || ||||||||||||||||| |||||    |||| ||| |  
Sbjct: 742 atctccttgcagggctgtgattccttcgccttctggaagaagacagcaccgttcttaatc 683

                                                                       
Query: 321 tcccactcggggtgttcctctgcgatgtactgctgcagttccttgtcggagctgaacata 380
           ||||| || ||||| ||||| | ||||||||  ||||| || | ||| || |||||||||
Sbjct: 682 tcccattccgggtgctcctcagtgatgtactcgtgcagatcttggtcagaactgaacata 623

                                                                       
Query: 381 aacatctgcttcgcatcgcttattgacaggtaatcatatcccttctcgctgcacccagct 440
           | ||| ||||| ||||| || |  || ||  ||||||| ||||| |||||||||||||| 
Sbjct: 622 agcatttgctttgcatcactcacagatagagaatcataccccttttcgctgcacccagcg 563

                                
Query: 441 atctcgtctctaaccgttttg 461
           ||||| |||||||| ||||||
Sbjct: 562 atctcatctctaactgttttg 542

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                                
Query: 258      ggtatctccttgcagggctgcgactccttcgccttctggaacaagacg 305
                |||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct: 14474267 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacg 14474314



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 337      cctctgcgatgtactgctgcagttccttgtcggagctgaacat 379
                |||||||||||||||| |||| ||| ||||| |||||||||||
Sbjct: 14474428 cctctgcgatgtactggtgcaattctttgtcagagctgaacat 14474470

>dbj|AP005200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0673E01
          Length = 125909

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                             
Query: 258   ggtatctccttgcagggctgcgactccttcgccttctggaacaagacg 305
             |||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct: 94598 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacg 94645



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 337   cctctgcgatgtactgctgcagttccttgtcggagctgaacat 379
             |||||||||||||||| |||| ||| ||||| |||||||||||
Sbjct: 94759 cctctgcgatgtactggtgcaattctttgtcagagctgaacat 94801

>ref|XM_809423.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053507257.50) partial mRNA
          Length = 5997

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 350  ctgctgcagttccttgtcggagctg 374
            |||| ||||||||||||||||||||
Sbjct: 2409 ctgccgcagttccttgtcggagctg 2385



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 350  ctgctgcagttccttgtcggagctg 374
            |||| ||||||||||||||||||||
Sbjct: 1686 ctgccgcagttccttgtcggagctg 1662



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 350 ctgctgcagttccttgtcggagctg 374
           |||| ||||||||||||||||||||
Sbjct: 963 ctgccgcagttccttgtcggagctg 939

>ref|XM_816110.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053510329.260) partial mRNA
          Length = 4551

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 350 ctgctgcagttccttgtcggagctg 374
           |||| ||||||||||||||||||||
Sbjct: 963 ctgccgcagttccttgtcggagctg 939

>emb|AL590398.9| Human DNA sequence from clone RP11-446G24 on chromosome 6 Contains the
             5' end of the HDAC2 gene for histone deacetylase 2 (human
             transcriptional regulator homolog RPD3, YAF1), two
             putative novel genes, a pseudogene similar to mouse D7Rp2e
             (DNA segment, Chr7, Roswell Park 2 complex, expressed) and
             a CpG island, complete sequence
          Length = 78366

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 176   ttgaaagaaaagagaggcaaa 196
             |||||||||||||||||||||
Sbjct: 12917 ttgaaagaaaagagaggcaaa 12937

>emb|BX936355.7| Mouse DNA sequence from clone RP24-541A1 on chromosome 4 Contains part
             of a novel gene and the Cbx3-ps3 gene for chromobox
             homolog 3 (Drosophila HP1 gamma), pseudogene 3, complete
             sequence
          Length = 144108

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 3     tctcaaacaattaattgatca 23
             |||||||||||||||||||||
Sbjct: 76547 tctcaaacaattaattgatca 76567

>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 229     caagggtctggttgatgacgggcgc 253
               |||||||||||| ||||||||||||
Sbjct: 4808975 caagggtctggtcgatgacgggcgc 4808951

>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 229     caagggtctggttgatgacgggcgc 253
               |||||||||||| ||||||||||||
Sbjct: 4813886 caagggtctggtcgatgacgggcgc 4813862

>emb|AL844153.3| Mouse DNA sequence from clone RP24-147L2 on chromosome 4, complete
              sequence
          Length = 193917

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 3      tctcaaacaattaattgatca 23
              |||||||||||||||||||||
Sbjct: 100025 tctcaaacaattaattgatca 100045

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 355     gcagttccttgtcggagctg 374
               ||||||||||||||||||||
Sbjct: 4057907 gcagttccttgtcggagctg 4057926

>emb|AL590727.5| Human DNA sequence from clone RP11-111D3 on chromosome 6 Contains a
              eukaryotic translation initiation factor 4E binding protein
              pseudogene and part of a novel gene, complete sequence
          Length = 127913

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     cttttgacatttcacagtat 62
              ||||||||||||||||||||
Sbjct: 108580 cttttgacatttcacagtat 108561

>gb|AF535436.1| HIV-1 isolate 88USMF880113sg from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 602

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 105 aaccaaaatagtacagctga 124
           ||||||||||||||||||||
Sbjct: 49  aaccaaaatagtacagctga 68

>gb|AC182752.1| Gasterosteus aculeatus clone VMRC26-161K14, complete sequence
          Length = 162574

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    agcactttggaaacagtggg 89
             ||||||||||||||||||||
Sbjct: 36157 agcactttggaaacagtggg 36176

>gb|AC135782.4| Homo sapiens chromosome 16 clone CTD-2555A7, complete sequence
          Length = 163550

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 145   tccacctcttcatgggaaattcag 168
             |||||||||||||||||| |||||
Sbjct: 47235 tccacctcttcatgggaatttcag 47258

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 271     agggctgcgactccttcgcc 290
               ||||||||||||||||||||
Sbjct: 7646676 agggctgcgactccttcgcc 7646695

>gb|AC122538.4| Mus musculus BAC clone RP24-548J11 from 16, complete sequence
          Length = 209585

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 162   aattcagtccaaagttgaaagaaa 185
             |||||||||||||| |||||||||
Sbjct: 92931 aattcagtccaaagctgaaagaaa 92908

>dbj|AP006096.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10G09, TM0173b,
             complete sequence
          Length = 66866

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 142   taatccacctcttcatgggaaatt 165
             |||||||||||||||| |||||||
Sbjct: 36400 taatccacctcttcattggaaatt 36377


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,084,402
Number of Sequences: 3902068
Number of extensions: 5084402
Number of successful extensions: 107666
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107526
Number of HSP's gapped (non-prelim): 140
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)