Clone Name | rbart54e12 |
---|---|
Clone Library Name | barley_pub |
>gb|AY351786.2| Hordeum vulgare beta-expansin 1 precursor (EXPB1) mRNA, complete cds Length = 1265 Score = 157 bits (79), Expect = 5e-36 Identities = 79/79 (100%) Strand = Plus / Minus Query: 1 atggatgccgattaccggatacgggcctttgacaaggtaaaaactcacaaattgcagaac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1038 atggatgccgattaccggatacgggcctttgacaaggtaaaaactcacaaattgcagaac 979 Query: 61 cagatctaagggcatacag 79 ||||||||||||||||||| Sbjct: 978 cagatctaagggcatacag 960
>gb|AY351785.1| Hordeum vulgare beta-expansin 1 precursor (EXPB1) gene, complete cds Length = 2536 Score = 157 bits (79), Expect = 5e-36 Identities = 79/79 (100%) Strand = Plus / Minus Query: 1 atggatgccgattaccggatacgggcctttgacaaggtaaaaactcacaaattgcagaac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1972 atggatgccgattaccggatacgggcctttgacaaggtaaaaactcacaaattgcagaac 1913 Query: 61 cagatctaagggcatacag 79 ||||||||||||||||||| Sbjct: 1912 cagatctaagggcatacag 1894
>gb|AC141109.13| Medicago truncatula clone mth2-16p3, complete sequence Length = 116180 Score = 40.1 bits (20), Expect = 0.82 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 caaggtaaaaactcacaaat 52 |||||||||||||||||||| Sbjct: 53193 caaggtaaaaactcacaaat 53174
>emb|BX546469.1| Human DNA sequence from clone RP5-1111N9 on chromosome Xq21.1-21.3, complete sequence Length = 58857 Score = 40.1 bits (20), Expect = 0.82 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 cctttgacaaggtaaaaact 45 |||||||||||||||||||| Sbjct: 52862 cctttgacaaggtaaaaact 52843
>gb|AC073244.13| Homo sapiens 3 BAC RP11-207J1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109999 Score = 40.1 bits (20), Expect = 0.82 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 actcacaaattgcagaacca 62 |||||||||||||||||||| Sbjct: 79743 actcacaaattgcagaacca 79762
>emb|AL022574.7|HS1111N9 Human DNA sequence from clone RP5-1111N9 on chromosome Xq21.1-21.3, complete sequence Length = 148521 Score = 40.1 bits (20), Expect = 0.82 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 cctttgacaaggtaaaaact 45 |||||||||||||||||||| Sbjct: 142526 cctttgacaaggtaaaaact 142507
>emb|BX936288.8| Platypus DNA sequence from clone XX-534O22, complete sequence Length = 153564 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 tttgacaaggtaaaaactc 46 ||||||||||||||||||| Sbjct: 131344 tttgacaaggtaaaaactc 131362
>gb|AC087322.17| Homo sapiens 12 BAC RP11-444D3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 66001 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 tcacaaattgcagaaccag 63 ||||||||||||||||||| Sbjct: 13289 tcacaaattgcagaaccag 13271
>gb|AC004625.3| Arabidopsis thaliana chromosome 2 clone T26J13 map CIC11C08, complete sequence Length = 42499 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 aaattgcagaaccagatct 67 ||||||||||||||||||| Sbjct: 9083 aaattgcagaaccagatct 9065
>gb|AC012404.9| Homo sapiens, clone RP11-39M21, complete sequence Length = 198857 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 caaggtaaaaactcacaaa 51 ||||||||||||||||||| Sbjct: 46107 caaggtaaaaactcacaaa 46089
>gb|AF246978.2|AF246978 Mus musculus transcription factor Stat5a (Stat5a) and transcription factor Stat3 (Stat3) genes, complete cds Length = 83848 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 49 aaattgcagaaccagatct 67 ||||||||||||||||||| Sbjct: 8165 aaattgcagaaccagatct 8183
>gb|AC073918.13|AC073918 Mus musculus 11 BAC RP23-362J7 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 195667 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 aaattgcagaaccagatct 67 ||||||||||||||||||| Sbjct: 95785 aaattgcagaaccagatct 95767
>dbj|AB010069.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC9 Length = 57246 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 acaaggtaaaaactcacaa 50 ||||||||||||||||||| Sbjct: 37541 acaaggtaaaaactcacaa 37523
>gb|AF049104.1|AF049104 Mus musculus signal transducer and transcription activator 5a (Stat5a) gene, partial cds Length = 10039 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 49 aaattgcagaaccagatct 67 ||||||||||||||||||| Sbjct: 9506 aaattgcagaaccagatct 9524
>emb|AL591466.8| Mouse DNA sequence from clone RP23-279L23 on chromosome 11, complete sequence Length = 239847 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 aaattgcagaaccagatct 67 ||||||||||||||||||| Sbjct: 130100 aaattgcagaaccagatct 130082
>emb|AL845305.5| Mouse DNA sequence from clone RP23-202K13 on chromosome 2, complete sequence Length = 200141 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 ctttgacaaggtaaaaact 45 ||||||||||||||||||| Sbjct: 173681 ctttgacaaggtaaaaact 173699 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 546,256 Number of Sequences: 3902068 Number of extensions: 546256 Number of successful extensions: 35687 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35667 Number of HSP's gapped (non-prelim): 20 length of query: 79 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 58 effective length of database: 17,151,101,840 effective search space: 994763906720 effective search space used: 994763906720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)