ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart54e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY351786.2| Hordeum vulgare beta-expansin 1 precursor (EXPB1)... 157 5e-36
2gb|AY351785.1| Hordeum vulgare beta-expansin 1 precursor (EXPB1)... 157 5e-36
3gb|AC141109.13| Medicago truncatula clone mth2-16p3, complete se... 40 0.82
4emb|BX546469.1| Human DNA sequence from clone RP5-1111N9 on chro... 40 0.82
5gb|AC073244.13| Homo sapiens 3 BAC RP11-207J1 (Roswell Park Canc... 40 0.82
6emb|AL022574.7|HS1111N9 Human DNA sequence from clone RP5-1111N9... 40 0.82
7emb|BX936288.8| Platypus DNA sequence from clone XX-534O22, comp... 38 3.2
8gb|AC087322.17| Homo sapiens 12 BAC RP11-444D3 (Roswell Park Can... 38 3.2
9gb|AC004625.3| Arabidopsis thaliana chromosome 2 clone T26J13 ma... 38 3.2
10gb|AC012404.9| Homo sapiens, clone RP11-39M21, complete sequence 38 3.2
11gb|AF246978.2|AF246978 Mus musculus transcription factor Stat5a ... 38 3.2
12gb|AC073918.13|AC073918 Mus musculus 11 BAC RP23-362J7 (Roswell ... 38 3.2
13dbj|AB010069.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 38 3.2
14gb|AF049104.1|AF049104 Mus musculus signal transducer and transc... 38 3.2
15emb|AL591466.8| Mouse DNA sequence from clone RP23-279L23 on chr... 38 3.2
16emb|AL845305.5| Mouse DNA sequence from clone RP23-202K13 on chr... 38 3.2

>gb|AY351786.2| Hordeum vulgare beta-expansin 1 precursor (EXPB1) mRNA, complete cds
          Length = 1265

 Score =  157 bits (79), Expect = 5e-36
 Identities = 79/79 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    atggatgccgattaccggatacgggcctttgacaaggtaaaaactcacaaattgcagaac 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 atggatgccgattaccggatacgggcctttgacaaggtaaaaactcacaaattgcagaac 979

                               
Query: 61   cagatctaagggcatacag 79
            |||||||||||||||||||
Sbjct: 978  cagatctaagggcatacag 960



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>gb|AY351785.1| Hordeum vulgare beta-expansin 1 precursor (EXPB1) gene, complete cds
          Length = 2536

 Score =  157 bits (79), Expect = 5e-36
 Identities = 79/79 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    atggatgccgattaccggatacgggcctttgacaaggtaaaaactcacaaattgcagaac 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1972 atggatgccgattaccggatacgggcctttgacaaggtaaaaactcacaaattgcagaac 1913

                               
Query: 61   cagatctaagggcatacag 79
            |||||||||||||||||||
Sbjct: 1912 cagatctaagggcatacag 1894



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>gb|AC141109.13| Medicago truncatula clone mth2-16p3, complete sequence
          Length = 116180

 Score = 40.1 bits (20), Expect = 0.82
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    caaggtaaaaactcacaaat 52
             ||||||||||||||||||||
Sbjct: 53193 caaggtaaaaactcacaaat 53174



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>emb|BX546469.1| Human DNA sequence from clone RP5-1111N9 on chromosome Xq21.1-21.3,
             complete sequence
          Length = 58857

 Score = 40.1 bits (20), Expect = 0.82
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    cctttgacaaggtaaaaact 45
             ||||||||||||||||||||
Sbjct: 52862 cctttgacaaggtaaaaact 52843



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>gb|AC073244.13| Homo sapiens 3 BAC RP11-207J1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 109999

 Score = 40.1 bits (20), Expect = 0.82
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    actcacaaattgcagaacca 62
             ||||||||||||||||||||
Sbjct: 79743 actcacaaattgcagaacca 79762



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>emb|AL022574.7|HS1111N9 Human DNA sequence from clone RP5-1111N9 on chromosome Xq21.1-21.3,
              complete sequence
          Length = 148521

 Score = 40.1 bits (20), Expect = 0.82
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     cctttgacaaggtaaaaact 45
              ||||||||||||||||||||
Sbjct: 142526 cctttgacaaggtaaaaact 142507



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>emb|BX936288.8| Platypus DNA sequence from clone XX-534O22, complete sequence
          Length = 153564

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     tttgacaaggtaaaaactc 46
              |||||||||||||||||||
Sbjct: 131344 tttgacaaggtaaaaactc 131362



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>gb|AC087322.17| Homo sapiens 12 BAC RP11-444D3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 66001

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 45    tcacaaattgcagaaccag 63
             |||||||||||||||||||
Sbjct: 13289 tcacaaattgcagaaccag 13271



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>gb|AC004625.3| Arabidopsis thaliana chromosome 2 clone T26J13 map CIC11C08, complete
            sequence
          Length = 42499

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 49   aaattgcagaaccagatct 67
            |||||||||||||||||||
Sbjct: 9083 aaattgcagaaccagatct 9065



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>gb|AC012404.9| Homo sapiens, clone RP11-39M21, complete sequence
          Length = 198857

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    caaggtaaaaactcacaaa 51
             |||||||||||||||||||
Sbjct: 46107 caaggtaaaaactcacaaa 46089



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>gb|AF246978.2|AF246978 Mus musculus transcription factor Stat5a (Stat5a) and transcription
            factor Stat3 (Stat3) genes, complete cds
          Length = 83848

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 49   aaattgcagaaccagatct 67
            |||||||||||||||||||
Sbjct: 8165 aaattgcagaaccagatct 8183



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>gb|AC073918.13|AC073918 Mus musculus 11 BAC RP23-362J7 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 195667

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 49    aaattgcagaaccagatct 67
             |||||||||||||||||||
Sbjct: 95785 aaattgcagaaccagatct 95767



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>dbj|AB010069.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC9
          Length = 57246

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 32    acaaggtaaaaactcacaa 50
             |||||||||||||||||||
Sbjct: 37541 acaaggtaaaaactcacaa 37523



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>gb|AF049104.1|AF049104 Mus musculus signal transducer and transcription activator 5a
            (Stat5a) gene, partial cds
          Length = 10039

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 49   aaattgcagaaccagatct 67
            |||||||||||||||||||
Sbjct: 9506 aaattgcagaaccagatct 9524



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>emb|AL591466.8| Mouse DNA sequence from clone RP23-279L23 on chromosome 11, complete
              sequence
          Length = 239847

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 49     aaattgcagaaccagatct 67
              |||||||||||||||||||
Sbjct: 130100 aaattgcagaaccagatct 130082



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>emb|AL845305.5| Mouse DNA sequence from clone RP23-202K13 on chromosome 2, complete
              sequence
          Length = 200141

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 27     ctttgacaaggtaaaaact 45
              |||||||||||||||||||
Sbjct: 173681 ctttgacaaggtaaaaact 173699


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 546,256
Number of Sequences: 3902068
Number of extensions: 546256
Number of successful extensions: 35687
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35667
Number of HSP's gapped (non-prelim): 20
length of query: 79
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 58
effective length of database: 17,151,101,840
effective search space: 994763906720
effective search space used: 994763906720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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