ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart54e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1L2GL2_MOUSE (Q3TJ91) Lethal(2) giant larvae protein homolog 2 (L... 30 2.5
2ZP2_CANFA (P47983) Zona pellucida sperm-binding protein 2 precur... 30 3.2
3SYFA_ACIAD (Q6F872) Phenylalanyl-tRNA synthetase alpha chain (EC... 30 3.2
4ZP2_BOVIN (Q9BH10) Zona pellucida sperm-binding protein 2 precur... 28 7.2
5L2GL2_HUMAN (Q6P1M3) Lethal(2) giant larvae protein homolog 2 (HGL) 28 9.4
6L2GL2_PONPY (Q5RCX2) Lethal(2) giant larvae protein homolog 2 28 9.4

>L2GL2_MOUSE (Q3TJ91) Lethal(2) giant larvae protein homolog 2 (Lethal giant|
           larvae-like protein 2)
          Length = 1027

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +2

Query: 158 IQIHFRPPHMIHPSCS-GLVVATTFQGRRPCLHFIKHLQLEDTPCCVPKNEAKA*CRDGC 334
           +Q H R P+ I    S GLVV    QG R   HF+   QLE+           +  RDGC
Sbjct: 194 LQEHPRDPNQILIGYSRGLVVIWDLQGSRALSHFLSSQQLENA----------SWQRDGC 243

Query: 335 ---DCHS 346
               CHS
Sbjct: 244 LIVTCHS 250



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>ZP2_CANFA (P47983) Zona pellucida sperm-binding protein 2 precursor (Zona|
           pellucida glycoprotein ZP2) (Zona pellucida protein A)
          Length = 715

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 428 TFEDASLPCWFLSIDLEEYNMDLLFQRNYDSRIHP 324
           T + ASLP W + +D  EYN+D     NY +  HP
Sbjct: 547 TMDPASLPQWNIVMDGCEYNLD-----NYRTTFHP 576



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>SYFA_ACIAD (Q6F872) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 330

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 62  HDVNKVYSLLNTSQIEIPKRLISMLLDISEMQIQIHFRPPH 184
           H +  +Y   NTS  E+   LI++L +  E  +++ FRP +
Sbjct: 210 HQIEGLYVAENTSFAELKGLLINLLNEFFEKDLKVRFRPSY 250



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>ZP2_BOVIN (Q9BH10) Zona pellucida sperm-binding protein 2 precursor (Zona|
           pellucida glycoprotein ZP2) (Zona pellucida protein A)
          Length = 713

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 428 TFEDASLPCWFLSIDLEEYNMDLLFQRNYDSRIHP 324
           T + ASLP W + +D  EYN+D     N+ +  HP
Sbjct: 545 TMDPASLPQWNIIVDGCEYNLD-----NHRTTFHP 574



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>L2GL2_HUMAN (Q6P1M3) Lethal(2) giant larvae protein homolog 2 (HGL)|
          Length = 1020

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 158 IQIHFRPPHMIHPSCS-GLVVATTFQGRRPCLHFIKHLQLED 280
           +Q H R P+ I    S GLVV    QG R   HF+   QLE+
Sbjct: 194 LQEHPRDPNQILIGYSRGLVVIWDLQGSRVLYHFLSSQQLEN 235



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>L2GL2_PONPY (Q5RCX2) Lethal(2) giant larvae protein homolog 2|
          Length = 1019

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 158 IQIHFRPPHMIHPSCS-GLVVATTFQGRRPCLHFIKHLQLED 280
           +Q H R P+ I    S GLVV    QG R   HF+   QLE+
Sbjct: 194 LQEHPRDPNQILIGYSRGLVVIWDLQGSRVLYHFLSSQQLEN 235


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,843,907
Number of Sequences: 219361
Number of extensions: 1215716
Number of successful extensions: 2842
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2841
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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