ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart54e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC157085.2| Mus musculus BAC clone RP24-185I21 from chromosom... 50 0.006
2emb|CR405683.10| Zebrafish DNA sequence from clone CH211-157B13 ... 48 0.024
3emb|AL603751.4| Human DNA sequence from clone RP11-84D2 on chrom... 44 0.37
4gb|AC015820.10| Homo sapiens chromosome 11, clone RP11-108G3, co... 44 0.37
5gb|AC100770.2| Homo sapiens chromosome 11, clone RP11-46P12, com... 44 0.37
6gb|AC080004.12| Homo sapiens 3q BAC RP11-307O15 (Roswell Park Ca... 44 0.37
7emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome 42 1.5
8emb|CR450728.8| Zebrafish DNA sequence from clone DKEY-204K18 in... 42 1.5
9dbj|AB219931.1| Xenopus laevis Xnr5-a, Xnr5-b, Xnr5-c genes, par... 42 1.5
10gb|AC154505.3| Mus musculus BAC clone RP24-92J14 from chromosome... 42 1.5
11gb|AY626476.1| Cercaria batillariae lineage HL2 haplotype 10 cyt... 42 1.5
12gb|AY626475.1| Cercaria batillariae lineage HL2 haplotype 9 cyto... 42 1.5
13gb|AY626474.1| Cercaria batillariae lineage HL2 haplotype 8 cyto... 42 1.5
14gb|AY626473.1| Cercaria batillariae lineage HL2 haplotype 7 cyto... 42 1.5
15gb|AY626472.1| Cercaria batillariae lineage HL2 haplotype 6 cyto... 42 1.5
16gb|AY626471.1| Cercaria batillariae lineage HL2 haplotype 5 cyto... 42 1.5
17gb|AY626470.1| Cercaria batillariae lineage HL2 haplotype 4 cyto... 42 1.5
18gb|AY626469.1| Cercaria batillariae lineage HL2 haplotype 3 cyto... 42 1.5
19gb|AY626468.1| Cercaria batillariae lineage HL2 haplotype 2 cyto... 42 1.5
20gb|AY626467.1| Cercaria batillariae lineage HL2 haplotype 1 cyto... 42 1.5
21dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
22dbj|AK108399.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
23gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
24emb|AL731756.4|CNS08C85 Oryza sativa chromosome 12, . BAC OJ1220... 42 1.5
25emb|CT025549.13| Mouse DNA sequence from clone RP24-235K10 on ch... 42 1.5
26gb|AC161519.11| Mus musculus chromosome 18, clone RP24-83L9, com... 40 5.8
27gb|AC126006.22| Medicago truncatula clone mth2-4c19, complete se... 40 5.8
28gb|AC122163.20| Medicago truncatula clone mth2-16l2, complete se... 40 5.8
29gb|AC141106.9| Medicago truncatula clone mth2-33e18, complete se... 40 5.8
30emb|Z96811.2|HS52D1 Human DNA sequence from clone RP1-52D1 on ch... 40 5.8
31emb|AL590397.7| Human DNA sequence from clone RP11-376O21 on chr... 40 5.8
32emb|AL445926.5| Human DNA sequence from clone RP11-439I6 on chro... 40 5.8
33emb|CR848717.7| Zebrafish DNA sequence from clone DKEY-148B12 in... 40 5.8
34gb|AC157758.4| Medicago truncatula clone mth2-62b13, complete se... 40 5.8
35gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 5.8
36dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome 40 5.8
37emb|BX548052.7| Zebrafish DNA sequence from clone CH211-286F6 in... 40 5.8
38dbj|AB066503.1| Schizophyllum commune ScGP-A gene for heterotrim... 40 5.8
39emb|BX548072.14| Zebrafish DNA sequence from clone DKEYP-84A8 in... 40 5.8
40emb|BX548061.6| Zebrafish DNA sequence from clone CH211-200O3 in... 40 5.8
41gb|AC104892.10| Mus musculus chromosome 18, clone RP23-262H4, co... 40 5.8
42gb|AF157495.1|AF157495 Schizophyllum commune heterotrimeric G pr... 40 5.8
43emb|AL732410.6| Mouse DNA sequence from clone RP23-91L2 on chrom... 40 5.8
44emb|AL136998.36| Mouse DNA sequence from clone RP21-509E24 on ch... 40 5.8 
>gb|AC157085.2| Mus musculus BAC clone RP24-185I21 from chromosome 9, complete sequence
          Length = 159122

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 347   tcctctgaaagagcaagtccatgtt 371
             |||||||||||||||||||||||||
Sbjct: 66224 tcctctgaaagagcaagtccatgtt 66248
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>emb|CR405683.10| Zebrafish DNA sequence from clone CH211-157B13 in linkage group 2,
              complete sequence
          Length = 166899

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 334    cgactgtcatagttcctctgaaag 357
              ||||||||||||||||||||||||
Sbjct: 145609 cgactgtcatagttcctctgaaag 145586
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>emb|AL603751.4| Human DNA sequence from clone RP11-84D2 on chromosome 6, complete
             sequence
          Length = 33473

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 358   agcaagtccatgttgtattcct 379
             ||||||||||||||||||||||
Sbjct: 28229 agcaagtccatgttgtattcct 28250
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>gb|AC015820.10| Homo sapiens chromosome 11, clone RP11-108G3, complete sequence
          Length = 165149

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 37    catgataaaaaacacaaattaa 58
             ||||||||||||||||||||||
Sbjct: 12828 catgataaaaaacacaaattaa 12807
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>gb|AC100770.2| Homo sapiens chromosome 11, clone RP11-46P12, complete sequence
          Length = 165585

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 37   catgataaaaaacacaaattaa 58
            ||||||||||||||||||||||
Sbjct: 3523 catgataaaaaacacaaattaa 3544
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>gb|AC080004.12| Homo sapiens 3q BAC RP11-307O15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 206162

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 37     catgataaaaaacacaaattaa 58
              ||||||||||||||||||||||
Sbjct: 183977 catgataaaaaacacaaattaa 183998
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>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome
          Length = 1144377

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 202    ttcaggacttgtagttgctacgaca 226
              |||||||| ||||||||||||||||
Sbjct: 754942 ttcaggacgtgtagttgctacgaca 754966
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>emb|CR450728.8| Zebrafish DNA sequence from clone DKEY-204K18 in linkage group 8,
             complete sequence
          Length = 193025

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 35    accatgataaaaaacacaaat 55
             |||||||||||||||||||||
Sbjct: 93741 accatgataaaaaacacaaat 93721
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>dbj|AB219931.1| Xenopus laevis Xnr5-a, Xnr5-b, Xnr5-c genes, partial and complete cds
          Length = 14029

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 354  aaagagcaagtccatgttgtattcc 378
            ||||||||||||||| |||||||||
Sbjct: 9444 aaagagcaagtccatattgtattcc 9420



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 354  aaagagcaagtccatgttgtattcc 378
            ||||||||||||||| |||||||||
Sbjct: 2838 aaagagcaagtccatattgtattcc 2814
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>gb|AC154505.3| Mus musculus BAC clone RP24-92J14 from chromosome 13, complete sequence
          Length = 199707

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 71    aacaaggtttatagccttctgaacactag 99
             |||||||||| ||||||||||| ||||||
Sbjct: 23646 aacaaggtttctagccttctgagcactag 23674
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>gb|AY626476.1| Cercaria batillariae lineage HL2 haplotype 10 cytochrome oxidase
           subunit I gene, partial cds; mitochondrial
          Length = 795

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 43  aaaaaacacaaattaacccca 63
           |||||||||||||||||||||
Sbjct: 518 aaaaaacacaaattaacccca 498
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>gb|AY626475.1| Cercaria batillariae lineage HL2 haplotype 9 cytochrome oxidase
           subunit I gene, partial cds; mitochondrial
          Length = 795

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 43  aaaaaacacaaattaacccca 63
           |||||||||||||||||||||
Sbjct: 518 aaaaaacacaaattaacccca 498
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>gb|AY626474.1| Cercaria batillariae lineage HL2 haplotype 8 cytochrome oxidase
           subunit I gene, partial cds; mitochondrial
          Length = 795

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 43  aaaaaacacaaattaacccca 63
           |||||||||||||||||||||
Sbjct: 518 aaaaaacacaaattaacccca 498
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>gb|AY626473.1| Cercaria batillariae lineage HL2 haplotype 7 cytochrome oxidase
           subunit I gene, partial cds; mitochondrial
          Length = 795

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 43  aaaaaacacaaattaacccca 63
           |||||||||||||||||||||
Sbjct: 518 aaaaaacacaaattaacccca 498
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>gb|AY626472.1| Cercaria batillariae lineage HL2 haplotype 6 cytochrome oxidase
           subunit I gene, partial cds; mitochondrial
          Length = 795

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 43  aaaaaacacaaattaacccca 63
           |||||||||||||||||||||
Sbjct: 518 aaaaaacacaaattaacccca 498
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>gb|AY626471.1| Cercaria batillariae lineage HL2 haplotype 5 cytochrome oxidase
           subunit I gene, partial cds; mitochondrial
          Length = 795

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 43  aaaaaacacaaattaacccca 63
           |||||||||||||||||||||
Sbjct: 518 aaaaaacacaaattaacccca 498
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>gb|AY626470.1| Cercaria batillariae lineage HL2 haplotype 4 cytochrome oxidase
           subunit I gene, partial cds; mitochondrial
          Length = 795

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 43  aaaaaacacaaattaacccca 63
           |||||||||||||||||||||
Sbjct: 518 aaaaaacacaaattaacccca 498
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>gb|AY626469.1| Cercaria batillariae lineage HL2 haplotype 3 cytochrome oxidase
           subunit I gene, partial cds; mitochondrial
          Length = 795

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 43  aaaaaacacaaattaacccca 63
           |||||||||||||||||||||
Sbjct: 518 aaaaaacacaaattaacccca 498
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>gb|AY626468.1| Cercaria batillariae lineage HL2 haplotype 2 cytochrome oxidase
           subunit I gene, partial cds; mitochondrial
          Length = 795

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 43  aaaaaacacaaattaacccca 63
           |||||||||||||||||||||
Sbjct: 518 aaaaaacacaaattaacccca 498
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>gb|AY626467.1| Cercaria batillariae lineage HL2 haplotype 1 cytochrome oxidase
           subunit I gene, partial cds; mitochondrial
          Length = 795

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 43  aaaaaacacaaattaacccca 63
           |||||||||||||||||||||
Sbjct: 518 aaaaaacacaaattaacccca 498
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 249     tacatttcatcaagcaccttc 269
               |||||||||||||||||||||
Sbjct: 7451240 tacatttcatcaagcaccttc 7451260
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>dbj|AK108399.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-G01, full
           insert sequence
          Length = 1018

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 249 tacatttcatcaagcaccttc 269
           |||||||||||||||||||||
Sbjct: 482 tacatttcatcaagcaccttc 462
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 249     tacatttcatcaagcaccttc 269
               |||||||||||||||||||||
Sbjct: 7451119 tacatttcatcaagcaccttc 7451139
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>emb|AL731756.4|CNS08C85 Oryza sativa chromosome 12, . BAC OJ1220_D01 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 98782

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 249   tacatttcatcaagcaccttc 269
             |||||||||||||||||||||
Sbjct: 40916 tacatttcatcaagcaccttc 40936
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>emb|CT025549.13| Mouse DNA sequence from clone RP24-235K10 on chromosome 13, complete
              sequence
          Length = 162143

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 71     aacaaggtttatagccttctgaacactag 99
              |||||||||| ||||||||||| ||||||
Sbjct: 130688 aacaaggtttctagccttctgagcactag 130716
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>gb|AC161519.11| Mus musculus chromosome 18, clone RP24-83L9, complete sequence
          Length = 233631

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 30     gaataaccatgataaaaaacacaa 53
              |||| |||||||||||||||||||
Sbjct: 220825 gaatgaccatgataaaaaacacaa 220802
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>gb|AC126006.22| Medicago truncatula clone mth2-4c19, complete sequence
          Length = 154378

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   ccacatatgatccatccatc 198
             ||||||||||||||||||||
Sbjct: 60461 ccacatatgatccatccatc 60442
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>gb|AC122163.20| Medicago truncatula clone mth2-16l2, complete sequence
          Length = 117439

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   ccacatatgatccatccatc 198
             ||||||||||||||||||||
Sbjct: 40166 ccacatatgatccatccatc 40185
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>gb|AC141106.9| Medicago truncatula clone mth2-33e18, complete sequence
          Length = 105951

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   aaaagattaatatcaatgct 135
             ||||||||||||||||||||
Sbjct: 24760 aaaagattaatatcaatgct 24741
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>emb|Z96811.2|HS52D1 Human DNA sequence from clone RP1-52D1 on chromosome Xq21, complete
             sequence
          Length = 148691

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 24    tcatttgaataaccatgataaaaaacacaaat 55
             ||||| |||| |||||||||||||| ||||||
Sbjct: 60445 tcattagaatgaccatgataaaaaagacaaat 60476
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>emb|AL590397.7| Human DNA sequence from clone RP11-376O21 on chromosome 9 Contains
            the 3' end of the PTPRD gene for protein tyrosine
            phosphatase, receptor type, D (HPTP, PTPD, HPTPD),
            complete sequence
          Length = 168323

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 39   tgataaaaaacacaaattaa 58
            ||||||||||||||||||||
Sbjct: 1361 tgataaaaaacacaaattaa 1342
to top
>emb|AL445926.5| Human DNA sequence from clone RP11-439I6 on chromosome 9 Contains the
             3' end of the PTPRD gene for protein tyrosine phosphatase,
             receptor type, D (HPTP, PTPD, HPTPD), complete sequence
          Length = 167253

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    tgataaaaaacacaaattaa 58
             ||||||||||||||||||||
Sbjct: 58387 tgataaaaaacacaaattaa 58368
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>emb|CR848717.7| Zebrafish DNA sequence from clone DKEY-148B12 in linkage group 5,
              complete sequence
          Length = 207800

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 338    tgtcatagttcctctgaaag 357
              ||||||||||||||||||||
Sbjct: 206574 tgtcatagttcctctgaaag 206555
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>gb|AC157758.4| Medicago truncatula clone mth2-62b13, complete sequence
          Length = 106286

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   aaaagattaatatcaatgct 135
             ||||||||||||||||||||
Sbjct: 92928 aaaagattaatatcaatgct 92909
to top
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    tcaagcaccttcaacttgaa 277
              ||||||||||||||||||||
Sbjct: 151230 tcaagcaccttcaacttgaa 151249
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>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome
          Length = 1358633

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    tcaagcaccttcaacttgaa 277
              ||||||||||||||||||||
Sbjct: 593615 tcaagcaccttcaacttgaa 593596
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>emb|BX548052.7| Zebrafish DNA sequence from clone CH211-286F6 in linkage group 18,
            complete sequence
          Length = 146410

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 153  tgcaaatacagatacacttc 172
            ||||||||||||||||||||
Sbjct: 9571 tgcaaatacagatacacttc 9590
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>dbj|AB066503.1| Schizophyllum commune ScGP-A gene for heterotrimeric G protein alpha
            subunit A, complete cds
          Length = 2142

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 262  gcaccttcaacttgaagaca 281
            ||||||||||||||||||||
Sbjct: 1219 gcaccttcaacttgaagaca 1200
to top
>emb|BX548072.14| Zebrafish DNA sequence from clone DKEYP-84A8 in linkage group 22,
             complete sequence
          Length = 188936

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 29    tgaataaccatgataaaaaacaca 52
             ||||||||||| ||||||||||||
Sbjct: 53103 tgaataaccatcataaaaaacaca 53126
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>emb|BX548061.6| Zebrafish DNA sequence from clone CH211-200O3 in linkage group 18,
             complete sequence
          Length = 84142

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   tgcaaatacagatacacttc 172
             ||||||||||||||||||||
Sbjct: 43001 tgcaaatacagatacacttc 42982
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>gb|AC104892.10| Mus musculus chromosome 18, clone RP23-262H4, complete sequence
          Length = 190380

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 30    gaataaccatgataaaaaacacaa 53
             |||| |||||||||||||||||||
Sbjct: 85912 gaatgaccatgataaaaaacacaa 85935
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>gb|AF157495.1|AF157495 Schizophyllum commune heterotrimeric G protein alpha subunit mRNA,
           complete cds
          Length = 1757

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 262 gcaccttcaacttgaagaca 281
           ||||||||||||||||||||
Sbjct: 928 gcaccttcaacttgaagaca 909
to top
>emb|AL732410.6| Mouse DNA sequence from clone RP23-91L2 on chromosome X, complete
             sequence
          Length = 220894

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   gttcctctgaaagagcaagt 364
             ||||||||||||||||||||
Sbjct: 62503 gttcctctgaaagagcaagt 62522
to top
>emb|AL136998.36| Mouse DNA sequence from clone RP21-509E24 on chromosome X, complete
             sequence
          Length = 188218

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   gttcctctgaaagagcaagt 364
             ||||||||||||||||||||
Sbjct: 91119 gttcctctgaaagagcaagt 91138


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,469,349
Number of Sequences: 3902068
Number of extensions: 4469349
Number of successful extensions: 87220
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87071
Number of HSP's gapped (non-prelim): 149
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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