ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart54e05 |
|---|---|
| Clone Library Name | barley_pub |
>TSSC4_RAT (Q5XIB1) Protein TSSC4| Length = 317 Score = 31.6 bits (70), Expect = 0.83 Identities = 16/39 (41%), Positives = 24/39 (61%) Frame = +1 Query: 157 LLFAVPKRGEPARLLREQLLHGRPLAGHDGEAVVELLHV 273 ++F P RG AR R+++L ++G GEA VEL H+ Sbjct: 210 VVFTKPVRGSEARAERKRVLKKGVVSGAGGEASVELAHL 248
>GATB_BIFLO (Q8G769) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 499 Score = 30.8 bits (68), Expect = 1.4 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%) Frame = -1 Query: 420 TEFGLSHMVQGFEQSQRDAFYKSVYDIVHESAKRGGAGAGAMVWQLAAEDMEEFHDGFA- 244 +E+GLS + RD D++ E+ K G AGA W L E G + Sbjct: 331 SEWGLSDL------QMRDILNADALDLIEETVKAGAKAAGARKWWLGELSREANAKGVSL 384 Query: 243 ----IVPSERPSMQKLL 205 I P++ ++KL+ Sbjct: 385 EELPITPADVAEVEKLI 401
>KLC_CAEEL (P46822) Kinesin light chain (KLC)| Length = 540 Score = 30.4 bits (67), Expect = 1.9 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 9/100 (9%) Frame = -1 Query: 405 SHMVQGFEQSQRDAFYKSVYDIVHESAKRGGAGAGAMVWQLAAEDMEEFHDGFAIVPSER 226 +++ QG + + + YK + HE +G +WQ+A E E H G +E+ Sbjct: 383 AYLKQG-KYKEAEELYKQILTRAHEREFGQISGENKPIWQIAEEREENKHKGEGATANEQ 441 Query: 225 PSMQKLLTEQSCRLATL---------RHGEQEAKRILKTV 133 K S + T R G+ EA L+ V Sbjct: 442 AGWAKAAKVDSPTVTTTLKNLGALYRRQGKYEAAETLEDV 481
>UVRC_CAUCR (Q9A4F3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 640 Score = 30.0 bits (66), Expect = 2.4 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Frame = +1 Query: 94 NTTPRKRDHGSAAHRLEDPLGLLFAVPKRGEPARLLREQLLHGRPLAGH---DGEAVVEL 264 N P + + S A L+ + AVPKRGE A L++ L + R G +G A +L Sbjct: 345 NVQPAESELLSEAFALKSGRKVEIAVPKRGEKADLVQHVLTNAREALGRKMAEGSAQTKL 404 Query: 265 L 267 L Sbjct: 405 L 405
>JHD1_DROME (Q9VHH9) JmjC domain-containing histone demethylation protein 1 (EC| 1.14.11.-) Length = 1345 Score = 29.6 bits (65), Expect = 3.2 Identities = 21/66 (31%), Positives = 27/66 (40%) Frame = +2 Query: 41 GSLRSISCRFPRDTQYKKTPHLAREITDQPHTVLRILLASCSPCLSVASRHDCSVSSFCM 220 G L +C P K +P+L T QP R +C+ C R DC FCM Sbjct: 644 GILNMDNCHSPEGGGAKLSPNLTG--TGQPRR-RRTRCKNCAAC----QRSDCGTCPFCM 696 Query: 221 DGLSLG 238 D + G Sbjct: 697 DMVKFG 702
>PVCC_PSEAE (O30372) Pyoverdin chromophore biosynthetic protein pvcC| Length = 500 Score = 29.6 bits (65), Expect = 3.2 Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Frame = +1 Query: 79 HTVQKNTTPRKRDH-----GSAAHRLEDPLGLLFAVPKRGEPARLLREQLLHGRPLAGHD 243 H +Q TT RD GSA RLE L VP+ + R L E L G PL Sbjct: 339 HLLQALTTAMARDPERNAAGSAVPRLEYANALRIQVPQIWKRVRELLESALGGAPLVTVS 398 Query: 244 GEA 252 G A Sbjct: 399 GAA 401
>SYY_THEFY (Q47N93) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA| ligase) (TyrRS) Length = 432 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = -1 Query: 276 EDMEEFHDGFAIVPSERPSMQKLLTEQSCRLATLRHGEQEAKRILK 139 E++EE P+ER + + L E L TL HGEQE + +++ Sbjct: 285 EEIEELEQKTIERPAERAAQRALAEE----LTTLVHGEQECRNVIE 326
>RR14_PEA (P05638) Chloroplast 30S ribosomal protein S14| Length = 100 Score = 29.3 bits (64), Expect = 4.1 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = +1 Query: 154 GLLFAVPKRGEPARLLREQLLHGRPLA-----GHDGEAVVELLHV 273 G L A+P+ P RL R L GRP A G G + E++H+ Sbjct: 45 GKLEALPRNSAPTRLHRRCFLTGRPRANVRDFGLSGHILREMVHI 89
>Y1381_MYCBO (P63432) Hypothetical protein Mb1381 precursor| Length = 386 Score = 28.9 bits (63), Expect = 5.4 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -1 Query: 321 RGGAGAGAMVWQLAAEDMEEFHDGFAIV 238 R G G ++W+L A M HDG+A V Sbjct: 353 RVGGGTDEVLWELVAAGMTPDHDGYAAV 380
>Y1346_MYCTU (P63431) Hypothetical protein Rv1346/MT1388 precursor| Length = 386 Score = 28.9 bits (63), Expect = 5.4 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -1 Query: 321 RGGAGAGAMVWQLAAEDMEEFHDGFAIV 238 R G G ++W+L A M HDG+A V Sbjct: 353 RVGGGTDEVLWELVAAGMTPDHDGYAAV 380
>RRMJ3_PONPY (Q5RAS1) Putative rRNA methyltransferase 3 (EC 2.1.1.-) (rRNA| (uridine-2'-O-)-methyltransferase 3) Length = 841 Score = 28.9 bits (63), Expect = 5.4 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -1 Query: 255 DGFAIVPSERPSMQKLLTEQSCRLATLRHGEQEAKRIL 142 DGF IVP E P+ ++L + L + ++AKR L Sbjct: 641 DGFEIVPIEDPAKHRILDPEGLALGAVIASSKKAKRDL 678
>RRMJ3_HUMAN (Q8IY81) Putative rRNA methyltransferase 3 (EC 2.1.1.-) (rRNA| (uridine-2'-O-)-methyltransferase 3) Length = 847 Score = 28.9 bits (63), Expect = 5.4 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -1 Query: 255 DGFAIVPSERPSMQKLLTEQSCRLATLRHGEQEAKRIL 142 DGF IVP E P+ ++L + L + ++AKR L Sbjct: 647 DGFEIVPIEDPAKHRILDPEGLALGAVIASSKKAKRDL 684
>I17RC_MOUSE (Q8K4C2) Interleukin-17 receptor C precursor (IL-17 receptor C)| (IL-17RC) (Interleukin-17 receptor-like protein) (IL-17RL) Length = 674 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -3 Query: 148 DPQDGVRLIRDLSCEVWCFFVLCVP 74 +PQD R LSC +W VLC+P Sbjct: 26 EPQDTARCSLGLSCHLWDGDVLCLP 50
>NDK7_MOUSE (Q9QXL8) Nucleoside diphosphate kinase 7 (EC 2.7.4.6) (NDK 7) (NDP| kinase 7) (nm23-M7) Length = 395 Score = 28.5 bits (62), Expect = 7.1 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = -3 Query: 427 GADGVRAVAHGPGLRAVAARRL 362 G DGVR AHGP A AAR + Sbjct: 216 GTDGVRNAAHGPDTFASAAREM 237
>ARGD1_PSESM (Q885K0) Acetylornithine aminotransferase 1 (EC 2.6.1.11) (ACOAT 1)| Length = 405 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = -1 Query: 309 GAGAMVWQLAAEDMEEFHDGFA--IVPSERPSMQKLLTEQSCRL 184 GAG+ VW A ++ +F G A ++ P++ LTEQ+ L Sbjct: 31 GAGSRVWDQAGRELVDFSGGIAVNVLGHCHPALVGALTEQANNL 74
>A4_RAT (P08592) Amyloid beta A4 protein precursor (APP) (ABPP) (Alzheimer| disease amyloid protein homolog) (Amyloidogenic glycoprotein) (AG) [Contains: Soluble APP-alpha (S-APP-alpha); Soluble APP-beta (S-APP-beta); C99; Beta-amyloid protein 42 (Beta-APP Length = 770 Score = 28.1 bits (61), Expect = 9.2 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 16/109 (14%) Frame = -1 Query: 279 AEDMEEFHDGFAIVPSERPSMQKLLTEQSCRLATLRHGEQEA-KRILKTVCG*SV----- 118 AED E+ DG V E + TE++ +AT E+ + +++ VC Sbjct: 242 AEDDEDVEDGDE-VEEEAEEPYEEATERTTSIATTTTTTTESVEEVVREVCSEQAETGPC 300 Query: 117 ----------ISLARCGVFLYCVSLGNRHEMDRRDP*KAVCTAPTSADL 1 ++ +C F Y GNR+ D + AVC + +S L Sbjct: 301 RAMISRWYFDVTEGKCAPFFYGGCGGNRNNFDTEEYCMAVCGSVSSQSL 349 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,299,956 Number of Sequences: 219361 Number of extensions: 896788 Number of successful extensions: 3117 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3051 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3114 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
