ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart54e02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 194 bits (98), Expect = 2e-46 Identities = 163/184 (88%), Gaps = 3/184 (1%) Strand = Plus / Minus Query: 205 gctattggtagaagagcaaggtgtagaagagctggttccaggtgtcgggtaggcccggga 264 |||||||||||||||| | | ||||||||||||||||| ||||| || ||||| |||| Sbjct: 10079743 gctattggtagaagagaagcgcatagaagagctggttccacgtgtccggcaggccgggga 10079684 Query: 265 ggcaccagtggctgcagtcggcggagccggcg---gggttgccgcgctgcgccggcgaga 321 ||||||||||||||||||| || |||||| || |||||| |||||||||||||||||| Sbjct: 10079683 ggcaccagtggctgcagtccgccgagccgccgccggggttggcgcgctgcgccggcgaga 10079624 Query: 322 agtcgccgctgtaaactgacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgt 381 |||||||||||| || ||||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 10079623 ggtcgccgctgtacaccgacgggtgcgcgtccttgcgcagcgccgacagcgccgagatgt 10079564 Query: 382 cgag 385 |||| Sbjct: 10079563 cgag 10079560 Score = 89.7 bits (45), Expect = 8e-15 Identities = 57/61 (93%) Strand = Plus / Minus Query: 227 gtagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggc 286 ||||| || |||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct: 10124581 gtagaggaactggttccaggtgtcggggaggcccgggaggcaccagtggatgcagtcggc 10124522 Query: 287 g 287 | Sbjct: 10124521 g 10124521 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 227 gtagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggc 286 ||||| ||||||||||||| |||||| | ||| ||||||||||||||| |||||||||| Sbjct: 33986109 gtagaggagctggttccagacgtcggggacgccggggaggcaccagtggatgcagtcggc 33986168 Query: 287 g 287 | Sbjct: 33986169 g 33986169 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 234 agctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 |||| |||||| | |||||| | ||| ||||||||||||||| ||||||||||| Sbjct: 34007689 agctcgttccacgcgtcggggacgccggggaggcaccagtgggtgcagtcggcg 34007742 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 339 gacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgtcga 384 |||| |||||| ||||| || ||| ||||||||||||||||||||| Sbjct: 10124457 gacgtgtgcgcatccttgcggagctccgacagcgccgtgatgtcga 10124412 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 339 gacgggtgcgcgtccttccgcagcgccgacagc 371 ||||||||||||||||| ||| || |||||||| Sbjct: 33986230 gacgggtgcgcgtccttgcgccgctccgacagc 33986262
>gb|AC137634.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0078C05, complete sequence Length = 122116 Score = 194 bits (98), Expect = 2e-46 Identities = 163/184 (88%), Gaps = 3/184 (1%) Strand = Plus / Minus Query: 205 gctattggtagaagagcaaggtgtagaagagctggttccaggtgtcgggtaggcccggga 264 |||||||||||||||| | | ||||||||||||||||| ||||| || ||||| |||| Sbjct: 25364 gctattggtagaagagaagcgcatagaagagctggttccacgtgtccggcaggccgggga 25305 Query: 265 ggcaccagtggctgcagtcggcggagccggcg---gggttgccgcgctgcgccggcgaga 321 ||||||||||||||||||| || |||||| || |||||| |||||||||||||||||| Sbjct: 25304 ggcaccagtggctgcagtccgccgagccgccgccggggttggcgcgctgcgccggcgaga 25245 Query: 322 agtcgccgctgtaaactgacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgt 381 |||||||||||| || ||||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 25244 ggtcgccgctgtacaccgacgggtgcgcgtccttgcgcagcgccgacagcgccgagatgt 25185 Query: 382 cgag 385 |||| Sbjct: 25184 cgag 25181 Score = 89.7 bits (45), Expect = 8e-15 Identities = 57/61 (93%) Strand = Plus / Minus Query: 227 gtagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggc 286 ||||| || |||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct: 70202 gtagaggaactggttccaggtgtcggggaggcccgggaggcaccagtggatgcagtcggc 70143 Query: 287 g 287 | Sbjct: 70142 g 70142 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 339 gacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgtcga 384 |||| |||||| ||||| || ||| ||||||||||||||||||||| Sbjct: 70078 gacgtgtgcgcatccttgcggagctccgacagcgccgtgatgtcga 70033
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 194 bits (98), Expect = 2e-46 Identities = 163/184 (88%), Gaps = 3/184 (1%) Strand = Plus / Minus Query: 205 gctattggtagaagagcaaggtgtagaagagctggttccaggtgtcgggtaggcccggga 264 |||||||||||||||| | | ||||||||||||||||| ||||| || ||||| |||| Sbjct: 10077864 gctattggtagaagagaagcgcatagaagagctggttccacgtgtccggcaggccgggga 10077805 Query: 265 ggcaccagtggctgcagtcggcggagccggcg---gggttgccgcgctgcgccggcgaga 321 ||||||||||||||||||| || |||||| || |||||| |||||||||||||||||| Sbjct: 10077804 ggcaccagtggctgcagtccgccgagccgccgccggggttggcgcgctgcgccggcgaga 10077745 Query: 322 agtcgccgctgtaaactgacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgt 381 |||||||||||| || ||||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 10077744 ggtcgccgctgtacaccgacgggtgcgcgtccttgcgcagcgccgacagcgccgagatgt 10077685 Query: 382 cgag 385 |||| Sbjct: 10077684 cgag 10077681 Score = 89.7 bits (45), Expect = 8e-15 Identities = 57/61 (93%) Strand = Plus / Minus Query: 227 gtagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggc 286 ||||| || |||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct: 10122702 gtagaggaactggttccaggtgtcggggaggcccgggaggcaccagtggatgcagtcggc 10122643 Query: 287 g 287 | Sbjct: 10122642 g 10122642 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 227 gtagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggc 286 ||||| ||||||||||||| |||||| | ||| ||||||||||||||| |||||||||| Sbjct: 34076581 gtagaggagctggttccagacgtcggggacgccggggaggcaccagtggatgcagtcggc 34076640 Query: 287 g 287 | Sbjct: 34076641 g 34076641 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 234 agctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 |||| |||||| | |||||| | ||| ||||||||||||||| ||||||||||| Sbjct: 34098161 agctcgttccacgcgtcggggacgccggggaggcaccagtgggtgcagtcggcg 34098214 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 339 gacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgtcga 384 |||| |||||| ||||| || ||| ||||||||||||||||||||| Sbjct: 10122578 gacgtgtgcgcatccttgcggagctccgacagcgccgtgatgtcga 10122533 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 339 gacgggtgcgcgtccttccgcagcgccgacagc 371 ||||||||||||||||| ||| || |||||||| Sbjct: 34076702 gacgggtgcgcgtccttgcgccgctccgacagc 34076734
>dbj|AK063646.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-H07, full insert sequence Length = 1399 Score = 194 bits (98), Expect = 2e-46 Identities = 163/184 (88%), Gaps = 3/184 (1%) Strand = Plus / Minus Query: 205 gctattggtagaagagcaaggtgtagaagagctggttccaggtgtcgggtaggcccggga 264 |||||||||||||||| | | ||||||||||||||||| ||||| || ||||| |||| Sbjct: 1193 gctattggtagaagagaagcgcatagaagagctggttccacgtgtccggcaggccgggga 1134 Query: 265 ggcaccagtggctgcagtcggcggagccggcg---gggttgccgcgctgcgccggcgaga 321 ||||||||||||||||||| || |||||| || |||||| |||||||||||||||||| Sbjct: 1133 ggcaccagtggctgcagtccgccgagccgccgccggggttggcgcgctgcgccggcgaga 1074 Query: 322 agtcgccgctgtaaactgacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgt 381 |||||||||||| || ||||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 1073 ggtcgccgctgtacaccgacgggtgcgcgtccttgcgcagcgccgacagcgccgagatgt 1014 Query: 382 cgag 385 |||| Sbjct: 1013 cgag 1010
>emb|AJ234787.1|HVU234787 Hordeum vulgare genomic DNA fragment; clone MWG2129.uni Length = 251 Score = 155 bits (78), Expect = 2e-34 Identities = 78/78 (100%) Strand = Plus / Plus Query: 416 caccgttttcgtcacctgctcctggcccatcggctgcgacgtgttattgggcccagccaa 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 caccgttttcgtcacctgctcctggcccatcggctgcgacgtgttattgggcccagccaa 60 Query: 476 cgggaccgtctccccgta 493 |||||||||||||||||| Sbjct: 61 cgggaccgtctccccgta 78
>dbj|AK099139.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050B10, full insert sequence Length = 2263 Score = 89.7 bits (45), Expect = 8e-15 Identities = 57/61 (93%) Strand = Plus / Minus Query: 227 gtagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggc 286 ||||| || |||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct: 1772 gtagaggaactggttccaggtgtcggggaggcccgggaggcaccagtggatgcagtcggc 1713 Query: 287 g 287 | Sbjct: 1712 g 1712 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 339 gacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgtcga 384 |||| |||||| ||||| || ||| ||||||||||||||||||||| Sbjct: 1648 gacgtgtgcgcatccttgcggagctccgacagcgccgtgatgtcga 1603
>dbj|AK070365.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050A10, full insert sequence Length = 2263 Score = 89.7 bits (45), Expect = 8e-15 Identities = 57/61 (93%) Strand = Plus / Minus Query: 227 gtagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggc 286 ||||| || |||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct: 1772 gtagaggaactggttccaggtgtcggggaggcccgggaggcaccagtggatgcagtcggc 1713 Query: 287 g 287 | Sbjct: 1712 g 1712 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 339 gacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgtcga 384 |||| |||||| ||||| || ||| ||||||||||||||||||||| Sbjct: 1648 gacgtgtgcgcatccttgcggagctccgacagcgccgtgatgtcga 1603
>dbj|AK064880.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000J23, full insert sequence Length = 1747 Score = 89.7 bits (45), Expect = 8e-15 Identities = 57/61 (93%) Strand = Plus / Minus Query: 227 gtagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggc 286 ||||| || |||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct: 1265 gtagaggaactggttccaggtgtcggggaggcccgggaggcaccagtggatgcagtcggc 1206 Query: 287 g 287 | Sbjct: 1205 g 1205 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 339 gacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgtcga 384 |||| |||||| ||||| || ||| ||||||||||||||||||||| Sbjct: 1141 gacgtgtgcgcatccttgcggagctccgacagcgccgtgatgtcga 1096
>dbj|AK060829.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C02, full insert sequence Length = 1189 Score = 89.7 bits (45), Expect = 8e-15 Identities = 57/61 (93%) Strand = Plus / Minus Query: 227 gtagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggc 286 ||||| || |||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct: 699 gtagaggaactggttccaggtgtcggggaggcccgggaggcaccagtggatgcagtcggc 640 Query: 287 g 287 | Sbjct: 639 g 639 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 339 gacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgtcga 384 |||| |||||| ||||| || ||| ||||||||||||||||||||| Sbjct: 575 gacgtgtgcgcatccttgcggagctccgacagcgccgtgatgtcga 530
>ref|NM_185574.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1527 Score = 77.8 bits (39), Expect = 3e-11 Identities = 48/51 (94%) Strand = Plus / Minus Query: 237 tggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 ||||||||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 1490 tggttccaggtgtcggggaggccagggaggcaccagtggatgcagtcggcg 1440 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 339 gacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgtc 382 |||| |||||||||||| || ||| ||||||||||||||||||| Sbjct: 1376 gacgtgtgcgcgtccttgcgaagctccgacagcgccgtgatgtc 1333
>gb|BT018101.1| Zea mays clone EL01N0553B02.c mRNA sequence Length = 730 Score = 77.8 bits (39), Expect = 3e-11 Identities = 48/51 (94%) Strand = Plus / Minus Query: 237 tggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 ||||||||||||||||| || |||||||||||||||||| ||||||||||| Sbjct: 587 tggttccaggtgtcggggagtcccgggaggcaccagtggatgcagtcggcg 537 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 344 gtgcgcgtccttccgcagcgccgacagcgccgtgatgtcga 384 |||||||||||| |||||| |||||||| |||||||||||| Sbjct: 468 gtgcgcgtccttgcgcagctccgacagccccgtgatgtcga 428
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 77.8 bits (39), Expect = 3e-11 Identities = 48/51 (94%) Strand = Plus / Plus Query: 237 tggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 ||||||||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 29458926 tggttccaggtgtcggggaggccagggaggcaccagtggatgcagtcggcg 29458976 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 339 gacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgtc 382 |||| |||||||||||| || ||| ||||||||||||||||||| Sbjct: 29459040 gacgtgtgcgcgtccttgcgaagctccgacagcgccgtgatgtc 29459083 Score = 50.1 bits (25), Expect = 0.007 Identities = 49/57 (85%) Strand = Plus / Minus Query: 227 gtagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 ||||| ||||| |||||| | ||| || | ||| ||||||||||||||||||||||| Sbjct: 27533755 gtagaggagctcgttccacgcgtccggcacgccggggaggcaccagtggctgcagtc 27533699
>dbj|AK119589.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D01, full insert sequence Length = 2056 Score = 77.8 bits (39), Expect = 3e-11 Identities = 48/51 (94%) Strand = Plus / Minus Query: 237 tggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 ||||||||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 1782 tggttccaggtgtcggggaggccagggaggcaccagtggatgcagtcggcg 1732 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 339 gacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgtc 382 |||| |||||||||||| || ||| ||||||||||||||||||| Sbjct: 1668 gacgtgtgcgcgtccttgcgaagctccgacagcgccgtgatgtc 1625
>dbj|AK108401.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-G04, full insert sequence Length = 884 Score = 77.8 bits (39), Expect = 3e-11 Identities = 48/51 (94%) Strand = Plus / Plus Query: 237 tggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 ||||||||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 187 tggttccaggtgtcggggaggccagggaggcaccagtggatgcagtcggcg 237 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 339 gacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgtc 382 |||| |||||||||||| || ||| ||||||||||||||||||| Sbjct: 301 gacgtgtgcgcgtccttgcgaagctccgacagcgccgtgatgtc 344
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0034A04 Length = 151263 Score = 77.8 bits (39), Expect = 3e-11 Identities = 48/51 (94%) Strand = Plus / Plus Query: 237 tggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 ||||||||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 121848 tggttccaggtgtcggggaggccagggaggcaccagtggatgcagtcggcg 121898 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 339 gacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgtc 382 |||| |||||||||||| || ||| ||||||||||||||||||| Sbjct: 121962 gacgtgtgcgcgtccttgcgaagctccgacagcgccgtgatgtc 122005
>ref|XM_470109.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1422 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 227 gtagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggc 286 ||||| ||||||||||||| |||||| | ||| ||||||||||||||| |||||||||| Sbjct: 1404 gtagaggagctggttccagacgtcggggacgccggggaggcaccagtggatgcagtcggc 1345 Query: 287 g 287 | Sbjct: 1344 g 1344 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 339 gacgggtgcgcgtccttccgcagcgccgacagc 371 ||||||||||||||||| ||| || |||||||| Sbjct: 1283 gacgggtgcgcgtccttgcgccgctccgacagc 1251
>gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0036C12, complete sequence Length = 145517 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 211 ggtagaagagcaaggtgtagaagagctggttccaggtgtcgggtaggcccgggaggcacc 270 ||||||||||| |||||||| ||||| |||||| ||||| | ||||| |||||||||| Sbjct: 86236 ggtagaagagcttggtgtagaggagctcgttccacgtgtcctgcaggccggggaggcacc 86295 Query: 271 agtggctgcagtcggcg 287 ||||| |||||||||| Sbjct: 86296 agtggacgcagtcggcg 86312
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 211 ggtagaagagcaaggtgtagaagagctggttccaggtgtcgggtaggcccgggaggcacc 270 ||||||||||| |||||||| ||||| |||||| ||||| | ||||| |||||||||| Sbjct: 16762126 ggtagaagagcttggtgtagaggagctcgttccacgtgtcctgcaggccggggaggcacc 16762185 Query: 271 agtggctgcagtcggcg 287 ||||| |||||||||| Sbjct: 16762186 agtggacgcagtcggcg 16762202 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 238 ggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 ||||||| ||||| || || || || |||||||||||||||||||||||| Sbjct: 29064383 ggttccacgtgtcaggcagcccgggcaggcaccagtggctgcagtcggcg 29064432 Score = 44.1 bits (22), Expect = 0.43 Identities = 40/46 (86%) Strand = Plus / Plus Query: 238 ggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 |||||||| |||||| | ||| ||||||||||||||| ||||||| Sbjct: 22936274 ggttccagacgtcggggacgccggggaggcaccagtggatgcagtc 22936319
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence Length = 172337 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 227 gtagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggc 286 ||||| ||||||||||||| |||||| | ||| ||||||||||||||| |||||||||| Sbjct: 71582 gtagaggagctggttccagacgtcggggacgccggggaggcaccagtggatgcagtcggc 71523 Query: 287 g 287 | Sbjct: 71522 g 71522 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 234 agctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 |||| |||||| | |||||| | ||| ||||||||||||||| ||||||||||| Sbjct: 50002 agctcgttccacgcgtcggggacgccggggaggcaccagtgggtgcagtcggcg 49949 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 339 gacgggtgcgcgtccttccgcagcgccgacagc 371 ||||||||||||||||| ||| || |||||||| Sbjct: 71461 gacgggtgcgcgtccttgcgccgctccgacagc 71429
>dbj|AK111450.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-B10, full insert sequence Length = 1616 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 227 gtagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggc 286 ||||| ||||||||||||| |||||| | ||| ||||||||||||||| |||||||||| Sbjct: 1480 gtagaggagctggttccagacgtcggggacgccggggaggcaccagtggatgcagtcggc 1421 Query: 287 g 287 | Sbjct: 1420 g 1420 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 339 gacgggtgcgcgtccttccgcagcgccgacagc 371 ||||||||||||||||| ||| || |||||||| Sbjct: 1359 gacgggtgcgcgtccttgcgccgctccgacagc 1327
>dbj|AK071031.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023076I22, full insert sequence Length = 1551 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 211 ggtagaagagcaaggtgtagaagagctggttccaggtgtcgggtaggcccgggaggcacc 270 ||||||||||| |||||||| ||||| |||||| ||||| | ||||| |||||||||| Sbjct: 1393 ggtagaagagcttggtgtagaggagctcgttccacgtgtcctgcaggccggggaggcacc 1334 Query: 271 agtggctgcagtcggcg 287 ||||| |||||||||| Sbjct: 1333 agtggacgcagtcggcg 1317
>ref|XM_468039.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2103 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 240 ttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 ||||||| |||||||| || ||||||||||||||||||||||| Sbjct: 2048 ttccaggagtcgggtactccagggaggcaccagtggctgcagtc 2005
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 240 ttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 ||||||| |||||||| || ||||||||||||||||||||||| Sbjct: 32689720 ttccaggagtcgggtactccagggaggcaccagtggctgcagtc 32689763
>dbj|AP004853.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1448_G06 Length = 136823 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 240 ttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 ||||||| |||||||| || ||||||||||||||||||||||| Sbjct: 17955 ttccaggagtcgggtactccagggaggcaccagtggctgcagtc 17998
>dbj|AP004068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1611_C08 Length = 135386 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 240 ttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 ||||||| |||||||| || ||||||||||||||||||||||| Sbjct: 117091 ttccaggagtcgggtactccagggaggcaccagtggctgcagtc 117134
>ref|XM_475989.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 855 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 238 ggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 ||||||| ||||| || || || || |||||||||||||||||||||||| Sbjct: 817 ggttccacgtgtcaggcagcccgggcaggcaccagtggctgcagtcggcg 768
>ref|XM_470112.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1454 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 234 agctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 |||| |||||| | |||||| | ||| ||||||||||||||| ||||||||||| Sbjct: 1175 agctcgttccacgcgtcggggacgccggggaggcaccagtgggtgcagtcggcg 1122
>ref|NM_190441.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1569 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 238 ggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 |||||||| |||| || | ||| ||||||||||||||| ||||||||||| Sbjct: 1525 ggttccagatgtcagggacgccggggaggcaccagtggatgcagtcggcg 1476
>gb|AC098598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1007_H05, complete sequence Length = 108479 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 238 ggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 ||||||| ||||| || || || || |||||||||||||||||||||||| Sbjct: 74438 ggttccacgtgtcaggcagcccgggcaggcaccagtggctgcagtcggcg 74487
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 238 ggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 |||||||| |||| || | ||| ||||||||||||||| ||||||||||| Sbjct: 35537197 ggttccagatgtcagggacgccggggaggcaccagtggatgcagtcggcg 35537148 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Plus Query: 325 cgccgctgtaaactgacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgtcga 384 |||||||||| | ||||||||| ||||| ||| |||| ||||||| ||||||||||| Sbjct: 26363159 cgccgctgtaccccgacgggtgcccgtccctcctcagctgcgacagcagcgtgatgtcga 26363218 Query: 385 gca 387 ||| Sbjct: 26363219 gca 26363221 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 263 gaggcaccagtggctgcagtcg 284 |||||||||||||||||||||| Sbjct: 26363124 gaggcaccagtggctgcagtcg 26363145 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Minus Query: 231 aagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 |||||| |||||||||| || || || ||||| | |||||||||||| ||||| Sbjct: 24363709 aagagcaggttccaggtatcaggcagccccggtaagcaccagtggctacagtc 24363657
>dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446G04 Length = 143515 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 238 ggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 |||||||| |||| || | ||| ||||||||||||||| ||||||||||| Sbjct: 67384 ggttccagatgtcagggacgccggggaggcaccagtggatgcagtcggcg 67335
>dbj|AK105654.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-G05, full insert sequence Length = 1965 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 238 ggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 |||||||| |||| || | ||| ||||||||||||||| ||||||||||| Sbjct: 1590 ggttccagatgtcagggacgccggggaggcaccagtggatgcagtcggcg 1541
>dbj|AK104541.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-A10, full insert sequence Length = 1392 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 234 agctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 |||| |||||| | |||||| | ||| ||||||||||||||| ||||||||||| Sbjct: 1160 agctcgttccacgcgtcggggacgccggggaggcaccagtgggtgcagtcggcg 1107
>dbj|AK101671.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058D09, full insert sequence Length = 2020 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 238 ggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 |||||||| |||| || | ||| ||||||||||||||| ||||||||||| Sbjct: 1632 ggttccagatgtcagggacgccggggaggcaccagtggatgcagtcggcg 1583
>dbj|AK065071.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001K07, full insert sequence Length = 3436 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 234 agctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 |||| |||||| | |||||| | ||| ||||||||||||||| ||||||||||| Sbjct: 3143 agctcgttccacgcgtcggggacgccggggaggcaccagtgggtgcagtcggcg 3090
>dbj|AK064730.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-A12, full insert sequence Length = 1982 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 238 ggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 ||||||| ||||| || || || || |||||||||||||||||||||||| Sbjct: 1870 ggttccacgtgtcaggcagcccgggcaggcaccagtggctgcagtcggcg 1821
>dbj|AK061407.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A07, full insert sequence Length = 1437 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 234 agctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 |||| |||||| | |||||| | ||| ||||||||||||||| ||||||||||| Sbjct: 1205 agctcgttccacgcgtcggggacgccggggaggcaccagtgggtgcagtcggcg 1152
>ref|XM_479393.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1326 Score = 50.1 bits (25), Expect = 0.007 Identities = 49/57 (85%) Strand = Plus / Minus Query: 227 gtagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 ||||| ||||| |||||| | ||| || | ||| ||||||||||||||||||||||| Sbjct: 1299 gtagaggagctcgttccacgcgtccggcacgccggggaggcaccagtggctgcagtc 1243
>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0018C07 Length = 141707 Score = 50.1 bits (25), Expect = 0.007 Identities = 49/57 (85%) Strand = Plus / Minus Query: 227 gtagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 ||||| ||||| |||||| | ||| || | ||| ||||||||||||||||||||||| Sbjct: 97726 gtagaggagctcgttccacgcgtccggcacgccggggaggcaccagtggctgcagtc 97670
>ref|NM_192390.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1179 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Minus Query: 325 cgccgctgtaaactgacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgtcga 384 |||||||||| | ||||||||| ||||| ||| |||| ||||||| ||||||||||| Sbjct: 1090 cgccgctgtaccccgacgggtgcccgtccctcctcagctgcgacagcagcgtgatgtcga 1031 Query: 385 gca 387 ||| Sbjct: 1030 gca 1028 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 263 gaggcaccagtggctgcagtcg 284 |||||||||||||||||||||| Sbjct: 1125 gaggcaccagtggctgcagtcg 1104
>gb|BT017395.1| Zea mays clone EL01N0328B07.c mRNA sequence Length = 1004 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 258 cccgggaggcaccagtggctgcagtcg 284 |||||||||||||||||| |||||||| Sbjct: 782 cccgggaggcaccagtggatgcagtcg 756
>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0032K15 Length = 126195 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Plus Query: 325 cgccgctgtaaactgacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgtcga 384 |||||||||| | ||||||||| ||||| ||| |||| ||||||| ||||||||||| Sbjct: 37024 cgccgctgtaccccgacgggtgcccgtccctcctcagctgcgacagcagcgtgatgtcga 37083 Query: 385 gca 387 ||| Sbjct: 37084 gca 37086 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 263 gaggcaccagtggctgcagtcg 284 |||||||||||||||||||||| Sbjct: 36989 gaggcaccagtggctgcagtcg 37010
>dbj|AK073036.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147O12, full insert sequence Length = 2659 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Minus Query: 325 cgccgctgtaaactgacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgtcga 384 |||||||||| | ||||||||| ||||| ||| |||| ||||||| ||||||||||| Sbjct: 1156 cgccgctgtaccccgacgggtgcccgtccctcctcagctgcgacagcagcgtgatgtcga 1097 Query: 385 gca 387 ||| Sbjct: 1096 gca 1094 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 263 gaggcaccagtggctgcagtcg 284 |||||||||||||||||||||| Sbjct: 1191 gaggcaccagtggctgcagtcg 1170
>dbj|AK069291.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013B17, full insert sequence Length = 1557 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Minus Query: 325 cgccgctgtaaactgacgggtgcgcgtccttccgcagcgccgacagcgccgtgatgtcga 384 |||||||||| | ||||||||| ||||| ||| |||| ||||||| ||||||||||| Sbjct: 1138 cgccgctgtaccccgacgggtgcccgtccctcctcagctgcgacagcagcgtgatgtcga 1079 Query: 385 gca 387 ||| Sbjct: 1078 gca 1076 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 263 gaggcaccagtggctgcagtcg 284 |||||||||||||||||||||| Sbjct: 1173 gaggcaccagtggctgcagtcg 1152
>gb|AY112045.1| Zea mays CL6829_1 mRNA sequence Length = 876 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 261 gggaggcaccagtggctgcagtc 283 ||||||||||||||||||||||| Sbjct: 387 gggaggcaccagtggctgcagtc 409
>gb|AY108652.1| Zea mays PCO078358 mRNA sequence Length = 347 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 258 cccgggaggcaccagtggctgcagtcg 284 |||||||||||||||||| |||||||| Sbjct: 155 cccgggaggcaccagtggatgcagtcg 129
>gb|BT017701.1| Zea mays clone EL01N0445F09.c mRNA sequence Length = 1039 Score = 44.1 bits (22), Expect = 0.43 Identities = 46/54 (85%) Strand = Plus / Minus Query: 227 gtagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgca 280 ||||| || ||||||||| ||||| || | ||| | |||||||||||||||||| Sbjct: 835 gtagaggatctggttccacgtgtccggcacgccggcgaggcaccagtggctgca 782
>gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052E20, complete sequence Length = 162434 Score = 44.1 bits (22), Expect = 0.43 Identities = 40/46 (86%) Strand = Plus / Plus Query: 238 ggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 |||||||| |||||| | ||| ||||||||||||||| ||||||| Sbjct: 40287 ggttccagacgtcggggacgccggggaggcaccagtggatgcagtc 40332
>dbj|AK065359.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013007F12, full insert sequence Length = 2034 Score = 44.1 bits (22), Expect = 0.43 Identities = 40/46 (86%) Strand = Plus / Minus Query: 238 ggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 |||||||| |||||| | ||| ||||||||||||||| ||||||| Sbjct: 1485 ggttccagacgtcggggacgccggggaggcaccagtggatgcagtc 1440
>gb|AY108866.1| Zea mays PCO116267 mRNA sequence Length = 858 Score = 44.1 bits (22), Expect = 0.43 Identities = 46/54 (85%) Strand = Plus / Minus Query: 234 agctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtcggcg 287 |||| |||||| ||||| || | ||| |||||||||||||| ||||||||||| Sbjct: 513 agctcgttccacgtgtccggcacgccggggaggcaccagtgcgtgcagtcggcg 460
>ref|NM_192777.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1419 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Minus Query: 231 aagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 |||||| |||||||||| || || || ||||| | |||||||||||| ||||| Sbjct: 1379 aagagcaggttccaggtatcaggcagccccggtaagcaccagtggctacagtc 1327
>gb|BT018859.1| Zea mays clone EL01N0557D09.d mRNA sequence Length = 2087 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Plus Query: 239 gttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 |||||| || || ||||| || || |||||||||||||||||||| Sbjct: 927 gttccatgtatcaggtagccctggtaggcaccagtggctgcagtc 971
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 299 gttgccgcgctgcgccggcgagaag 323 |||||||||||| |||||||||||| Sbjct: 16667629 gttgccgcgctgtgccggcgagaag 16667605 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 gggaggcaccagtggctgca 280 |||||||||||||||||||| Sbjct: 26766876 gggaggcaccagtggctgca 26766857 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 aggcaccagtggctgcagtc 283 |||||||||||||||||||| Sbjct: 5462946 aggcaccagtggctgcagtc 5462927
>gb|AC009910.5|AC009910 Drosophila melanogaster, chromosome 2L, region 25D-25E, BAC clone BACR35L07, complete sequence Length = 193924 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 457 tgttattgggcccagccaacg 477 ||||||||||||||||||||| Sbjct: 154285 tgttattgggcccagccaacg 154305
>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E01 Length = 166753 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Minus Query: 231 aagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 |||||| |||||||||| || || || ||||| | |||||||||||| ||||| Sbjct: 109613 aagagcaggttccaggtatcaggcagccccggtaagcaccagtggctacagtc 109561
>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664F03 Length = 184242 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 299 gttgccgcgctgcgccggcgagaag 323 |||||||||||| |||||||||||| Sbjct: 19116 gttgccgcgctgtgccggcgagaag 19092
>dbj|AK105551.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-A11, full insert sequence Length = 1509 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Minus Query: 231 aagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 |||||| |||||||||| || || || ||||| | |||||||||||| ||||| Sbjct: 1429 aagagcaggttccaggtatcaggcagccccggtaagcaccagtggctacagtc 1377
>gb|BT024109.1| Zea mays clone EL01N0518E03 mRNA sequence Length = 1885 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Minus Query: 236 ctggttccaggtgtcgggtaggcccgggaggcaccagtggctgca 280 ||||||||| ||||| || | ||| ||||||||||||||| |||| Sbjct: 1661 ctggttccacgtgtccggcacgccggggaggcaccagtggatgca 1617
>dbj|AK060357.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-G12, full insert sequence Length = 959 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 231 aagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 |||||| |||||||||| || || || ||||| | |||||||||||| ||||| Sbjct: 63 aagagcaggttccaggtatcaggcagccccggtaagcaccagtggctacagtc 115
>gb|AY111065.1| Zea mays CL4363_2 mRNA sequence Length = 1402 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Minus Query: 236 ctggttccaggtgtcgggtaggcccgggaggcaccagtggctgca 280 ||||||||| ||||| || | ||| ||||||||||||||| |||| Sbjct: 1081 ctggttccacgtgtccggcacgccggggaggcaccagtggatgca 1037
>gb|AE003610.3| Drosophila melanogaster chromosome 2L, section 19 of 83 of the complete sequence Length = 260249 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 457 tgttattgggcccagccaacg 477 ||||||||||||||||||||| Sbjct: 197392 tgttattgggcccagccaacg 197412
>gb|AC006131.1|AC006131 Homo sapiens chromosome 19, cosmid F8400, complete sequence Length = 36817 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 424 tcgtcacctgctcctggccca 444 ||||||||||||||||||||| Sbjct: 32885 tcgtcacctgctcctggccca 32905
>gb|AC004721.1|AC004721 Drosophila melanogaster DNA sequence (P1 DS03308 (D285)), complete sequence Length = 80628 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 457 tgttattgggcccagccaacg 477 ||||||||||||||||||||| Sbjct: 14206 tgttattgggcccagccaacg 14226
>gb|DQ138691.1| Drosophila erecta voucher stock #14021-0224.0 CG17304 gene, partial cds Length = 516 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 154 agcactgcatctgcagcatctggcc 178 ||||| ||||||||||||||||||| Sbjct: 166 agcaccgcatctgcagcatctggcc 190
>gb|DQ138690.1| Drosophila yakuba strain T33 CG17304 gene, partial cds Length = 504 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 154 agcactgcatctgcagcatctggcc 178 ||||| ||||||||||||||||||| Sbjct: 160 agcaccgcatctgcagcatctggcc 184
>gb|DQ138689.1| Drosophila yakuba strain Tai18 CG17304 gene, partial cds Length = 504 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 154 agcactgcatctgcagcatctggcc 178 ||||| ||||||||||||||||||| Sbjct: 157 agcaccgcatctgcagcatctggcc 181
>gb|DQ138688.1| Drosophila simulans strain Ky-b CG17304 gene, partial cds Length = 492 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 154 agcactgcatctgcagcatctggcc 178 ||||| ||||||||||||||||||| Sbjct: 166 agcaccgcatctgcagcatctggcc 190
>gb|DQ138687.1| Drosophila simulans strain Ky-a CG17304 gene, partial cds Length = 492 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 154 agcactgcatctgcagcatctggcc 178 ||||| ||||||||||||||||||| Sbjct: 166 agcaccgcatctgcagcatctggcc 190
>ref|NM_127016.2| Arabidopsis thaliana unknown protein AT2G14530 mRNA, complete cds Length = 1545 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 240 ttccaggtgtcgggtaggcccgggaggcacca 271 ||||| ||||||| ||||||||||||||||| Sbjct: 1259 ttccaagtgtcggtaaggcccgggaggcacca 1228
>ref|NM_202506.1| Arabidopsis thaliana unknown protein AT3G06080 transcript variant AT3G06080.2 mRNA, complete cds Length = 2122 Score = 40.1 bits (20), Expect = 6.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 228 tagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 |||||||||| |||||| ||||| || | || || |||||||||||||| ||||| Sbjct: 1785 tagaagagctcgttccacgtgtcaggaacaccgggaaggcaccagtggctacagtc 1730
>ref|NM_111483.2| Arabidopsis thaliana unknown protein AT3G06080 transcript variant AT3G06080.1 mRNA, complete cds Length = 2256 Score = 40.1 bits (20), Expect = 6.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 228 tagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 |||||||||| |||||| ||||| || | || || |||||||||||||| ||||| Sbjct: 1919 tagaagagctcgttccacgtgtcaggaacaccgggaaggcaccagtggctacagtc 1864
>ref|NM_106518.1| Arabidopsis thaliana unknown protein AT1G78710 mRNA, complete cds Length = 1080 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 gggaggcaccagtggctgcagtcg 284 ||||||||||| |||||||||||| Sbjct: 1025 gggaggcaccaatggctgcagtcg 1002
>ref|XM_629236.1| Dictyostelium discoideum hypothetical protein (DDB0191832), partial mRNA Length = 1572 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 218 gagcaaggtgtagaagagctggttccaggtgt 249 ||||||||||||| |||| |||| |||||||| Sbjct: 1060 gagcaaggtgtagcagagttggtaccaggtgt 1091
>ref|XM_473115.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2136 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 aggcaccagtggctgcagtc 283 |||||||||||||||||||| Sbjct: 2057 aggcaccagtggctgcagtc 2038
>ref|NM_001024582.1| Gallus gallus CD1a molecule (CD1A), mRNA Length = 1636 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 aagagcaaggtgtagaagagctgg 239 |||||||| ||||||||||||||| Sbjct: 125 aagagcaatgtgtagaagagctgg 102
>gb|AC018907.5|ATAC018907 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence Length = 93478 Score = 40.1 bits (20), Expect = 6.7 Identities = 47/56 (83%) Strand = Plus / Plus Query: 228 tagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 |||||||||| |||||| ||||| || | || || |||||||||||||| ||||| Sbjct: 1237 tagaagagctcgttccacgtgtcaggaacaccgggaaggcaccagtggctacagtc 1292
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 ttccgcagcgccgacagcgc 373 |||||||||||||||||||| Sbjct: 1022967 ttccgcagcgccgacagcgc 1022986
>ref|NM_001031437.1| Gallus gallus similar to Protein KIAA0020 (LOC427350), mRNA Length = 2013 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 agaagagctggttccaggtg 248 |||||||||||||||||||| Sbjct: 1554 agaagagctggttccaggtg 1573
>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11, complete sequence Length = 143582 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 aggcaccagtggctgcagtc 283 |||||||||||||||||||| Sbjct: 139427 aggcaccagtggctgcagtc 139446
>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence Length = 164577 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 aggcaccagtggctgcagtc 283 |||||||||||||||||||| Sbjct: 82047 aggcaccagtggctgcagtc 82066
>emb|AJ719494.1| Gallus gallus mRNA for hypothetical protein, clone 2n8 Length = 2050 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 agaagagctggttccaggtg 248 |||||||||||||||||||| Sbjct: 1591 agaagagctggttccaggtg 1610
>gb|AY124844.1| Arabidopsis thaliana At2g14530/T13P21.9 mRNA, complete cds Length = 1239 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 240 ttccaggtgtcgggtaggcccgggaggcacca 271 ||||| ||||||| ||||||||||||||||| Sbjct: 1196 ttccaagtgtcggtaaggcccgggaggcacca 1165
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 gaagagcaaggtgtagaaga 234 |||||||||||||||||||| Sbjct: 914343 gaagagcaaggtgtagaaga 914362
>dbj|AB204802.1| Gallus gallus mRNA for CD1.1, complete cds Length = 1674 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 aagagcaaggtgtagaagagctgg 239 |||||||| ||||||||||||||| Sbjct: 172 aagagcaatgtgtagaagagctgg 149
>gb|AC006067.4| Arabidopsis thaliana chromosome 2 clone T13P21 map mi398, complete sequence Length = 126337 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 240 ttccaggtgtcgggtaggcccgggaggcacca 271 ||||| ||||||| ||||||||||||||||| Sbjct: 48397 ttccaagtgtcggtaaggcccgggaggcacca 48428
>gb|AY074875.1| Arabidopsis thaliana At2g14530/T13P21.9 mRNA, complete cds Length = 1548 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 240 ttccaggtgtcgggtaggcccgggaggcacca 271 ||||| ||||||| ||||||||||||||||| Sbjct: 1262 ttccaagtgtcggtaaggcccgggaggcacca 1231
>gb|AY059837.1| Arabidopsis thaliana unknown protein (F24F17.6) mRNA, complete cds Length = 2219 Score = 40.1 bits (20), Expect = 6.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 228 tagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 |||||||||| |||||| ||||| || | || || |||||||||||||| ||||| Sbjct: 1919 tagaagagctcgttccacgtgtcaggaacaccgggaaggcaccagtggctacagtc 1864
>gb|AY849320.1| Gallus gallus CD1.2 antigen (CD1.2) mRNA, complete cds Length = 1636 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 aagagcaaggtgtagaagagctgg 239 |||||||| ||||||||||||||| Sbjct: 125 aagagcaatgtgtagaagagctgg 102
>gb|AY849318.1| Gallus gallus CD1.1 antigen (CD1.1) and CD1.2 antigen (CD1.2) genes, complete cds Length = 9107 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 aagagcaaggtgtagaagagctgg 239 |||||||| ||||||||||||||| Sbjct: 5535 aagagcaatgtgtagaagagctgg 5512
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 gccggcggggttgccgcgct 309 |||||||||||||||||||| Sbjct: 1806289 gccggcggggttgccgcgct 1806270
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 aggcaccagtggctgcagtc 283 |||||||||||||||||||| Sbjct: 25355488 aggcaccagtggctgcagtc 25355507
>emb|BX820933.1|CNS0AA06 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH82ZG06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1532 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 240 ttccaggtgtcgggtaggcccgggaggcacca 271 ||||| ||||||| ||||||||||||||||| Sbjct: 1245 ttccaagtgtcggtaaggcccgggaggcacca 1214
>emb|BX820848.1|CNS0A8L3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH75ZC08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1430 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 240 ttccaggtgtcgggtaggcccgggaggcacca 271 ||||| ||||||| ||||||||||||||||| Sbjct: 1224 ttccaagtgtcggtaaggcccgggaggcacca 1193
>emb|BX823469.1|CNS0A4XC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS41ZC10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1969 Score = 40.1 bits (20), Expect = 6.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 228 tagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 |||||||||| |||||| ||||| || | || || |||||||||||||| ||||| Sbjct: 1706 tagaagagctcgttccacgtgtcaggaacaccgggaaggcaccagtggctacagtc 1651
>gb|AC068073.1|AC068073 Arabidopsis thaliana chromosome 3 BAC F24F17 genomic sequence, complete sequence Length = 24745 Score = 40.1 bits (20), Expect = 6.7 Identities = 47/56 (83%) Strand = Plus / Plus Query: 228 tagaagagctggttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 |||||||||| |||||| ||||| || | || || |||||||||||||| ||||| Sbjct: 20625 tagaagagctcgttccacgtgtcaggaacaccgggaaggcaccagtggctacagtc 20680
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 351 tccttccgcagcgccgacagcgcc 374 |||||||||||| ||||||||||| Sbjct: 3740441 tccttccgcagctccgacagcgcc 3740464
>gb|AY375530.1| Gallus gallus CD1-2 antigen mRNA, complete cds Length = 1642 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 aagagcaaggtgtagaagagctgg 239 |||||||| ||||||||||||||| Sbjct: 125 aagagcaatgtgtagaagagctgg 102
>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0051O02 Length = 169532 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 gggaggcaccagtggctgca 280 |||||||||||||||||||| Sbjct: 21502 gggaggcaccagtggctgca 21483
>dbj|AP005760.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1047G05 Length = 145431 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 gggaggcaccagtggctgca 280 |||||||||||||||||||| Sbjct: 124339 gggaggcaccagtggctgca 124320
>dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664C05 Length = 165354 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 aggcaccagtggctgcagtc 283 |||||||||||||||||||| Sbjct: 9854 aggcaccagtggctgcagtc 9835
>dbj|AP004754.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0529B09 Length = 138188 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 aggcaccagtggctgcagtc 283 |||||||||||||||||||| Sbjct: 93880 aggcaccagtggctgcagtc 93861
>dbj|AK106651.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-F10, full insert sequence Length = 1621 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 gggaggcaccagtggctgca 280 |||||||||||||||||||| Sbjct: 1399 gggaggcaccagtggctgca 1380
>dbj|AK073911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079B01, full insert sequence Length = 2586 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 aggcaccagtggctgcagtc 283 |||||||||||||||||||| Sbjct: 2085 aggcaccagtggctgcagtc 2066
>dbj|AK071432.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092D01, full insert sequence Length = 2488 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 aggcaccagtggctgcagtc 283 |||||||||||||||||||| Sbjct: 2149 aggcaccagtggctgcagtc 2130
>dbj|AK071067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081G06, full insert sequence Length = 1622 Score = 40.1 bits (20), Expect = 6.7 Identities = 38/44 (86%) Strand = Plus / Minus Query: 240 ttccaggtgtcgggtaggcccgggaggcaccagtggctgcagtc 283 ||||| ||||| || | |||||| || ||||||||||||||||| Sbjct: 1366 ttccatgtgtcaggcacgcccggcagacaccagtggctgcagtc 1323
>dbj|AK060283.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-B08, full insert sequence Length = 692 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 aggcaccagtggctgcagtc 283 |||||||||||||||||||| Sbjct: 330 aggcaccagtggctgcagtc 311
>gb|AC005679.1|F9K20 Arabidopsis thaliana chromosome 1 BAC F9K20 sequence, complete sequence Length = 90425 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 gggaggcaccagtggctgcagtcg 284 ||||||||||| |||||||||||| Sbjct: 73387 gggaggcaccaatggctgcagtcg 73410
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 gaagagcaaggtgtagaaga 234 |||||||||||||||||||| Sbjct: 706527 gaagagcaaggtgtagaaga 706508 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,143,905 Number of Sequences: 3902068 Number of extensions: 3143905 Number of successful extensions: 57674 Number of sequences better than 10.0: 108 Number of HSP's better than 10.0 without gapping: 114 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 56947 Number of HSP's gapped (non-prelim): 721 length of query: 493 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 471 effective length of database: 17,147,199,772 effective search space: 8076331092612 effective search space used: 8076331092612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
