ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart54e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB193552.1| Triticum aestivum WLIP19 mRNA for bZIP transcrip... 202 7e-49
2gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome... 101 2e-18
3emb|X57325.1|OSLIP19 Rice lip19 mRNA for basic/leucine zipper pr... 101 2e-18
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
5dbj|AK105138.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
6dbj|AK104844.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
7dbj|AK065180.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
8dbj|D63955.1| Oryza sativa glip19 gene, complete cds 101 2e-18
9emb|AL512603.26| Human DNA sequence from clone RP11-426A21 on ch... 42 1.6
10gb|AC098823.3| Homo sapiens BAC clone RP11-420E18 from 2, comple... 42 1.6
11emb|AL831771.5| Mouse DNA sequence from clone RP23-336F13 on chr... 42 1.6
12gb|AY108024.1| Zea mays PCO086173 mRNA sequence 42 1.6
13emb|AL133316.5|CNS01DUR Human chromosome 14 DNA sequence Partial... 42 1.6
14emb|AL079307.7|CNS00M8N Human chromosome 14 DNA sequence BAC R-2... 42 1.6
15emb|AL132716.6|CNS01DTF Human chromosome 14 DNA sequence BAC R-1... 42 1.6
16ref|NM_187584.1| Oryza sativa (japonica cultivar-group), predic... 40 6.2
17gb|DQ141104.1| Drosophila ananassae Dscam gene, partial sequence 40 6.2
18ref|NM_191140.1| Oryza sativa (japonica cultivar-group), predic... 40 6.2
19gb|U53344.3| Caenorhabditis elegans cosmid T07H6, complete sequence 40 6.2
20gb|BC050393.1| Homo sapiens F-box protein 25, mRNA (cDNA clone M... 40 6.2
21ref|NM_183421.1| Homo sapiens F-box protein 25 (FBXO25), transcr... 40 6.2
22ref|NM_183420.1| Homo sapiens F-box protein 25 (FBXO25), transcr... 40 6.2
23ref|NM_012173.3| Homo sapiens F-box protein 25 (FBXO25), transcr... 40 6.2
24gb|AC166561.2| Spironucleus vortens clone JGIBAWF-9C3, complete ... 40 6.2
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.2
26gb|AC083964.3| Homo sapiens chromosome 8, clone RP11-91J19, comp... 40 6.2
27gb|AF419858.1| Homo sapiens unknown mRNA 40 6.2
28gb|AY055110.1| Xanthomonas oryzae pv. oryzae KACC10331 BAC clone... 40 6.2
29gb|AC034236.5| Homo sapiens chromosome 5 clone CTD-2287O16, comp... 40 6.2
30emb|AL135778.9| Human DNA sequence from clone RP1-119C5 on chrom... 40 6.2
31emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome 40 6.2
32emb|BX547996.10| Zebrafish DNA sequence from clone CH211-212H16 ... 40 6.2
33gb|AE011634.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.2
34emb|CR591359.1| full-length cDNA clone CS0DB003YK09 of Neuroblas... 40 6.2
35gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 6.2
36gb|AC104427.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
37dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 40 6.2
38gb|AC023110.8| Homo sapiens BAC clone RP11-204H9 from 4, complet... 40 6.2
39gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome 40 6.2
40ref|NM_076652.3| Caenorhabditis elegans T07H6.5 (T07H6.5) mRNA, ... 40 6.2
41dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
42dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
43dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
44gb|AC025574.19| Homo sapiens 12 BAC RP11-348M3 (Roswell Park Can... 40 6.2
45dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
46gb|AC078820.28| Homo sapiens 12 BAC RP11-114H23 (Roswell Park Ca... 40 6.2
47dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
48dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
49dbj|AB010000.1| Cavia porcellus gene for platelet activating fac... 40 6.2
50emb|AJ298970.1|ACA298970 Apistogramma caetei mitochondrial parti... 40 6.2
51emb|AJ298969.1|ACA298969 Apistogramma caetei mitochondrial parti... 40 6.2
52emb|AJ298968.1|ACA298968 Apistogramma caetei mitochondrial parti... 40 6.2
53gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 6.2 
>dbj|AB193552.1| Triticum aestivum WLIP19 mRNA for bZIP transcription factor,
           complete cds
          Length = 676

 Score =  202 bits (102), Expect = 7e-49
 Identities = 123/130 (94%)
 Strand = Plus / Minus

                                                                       
Query: 331 tcttggctcagaactggaacgcatctggcacgccgccggcggtggccagctggggcgcga 390
           |||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct: 659 tcttggctcagaactggaacgcgtcaggcatgccgccggcggtggccagctggggcgcga 600

                                                                       
Query: 391 acggggactgccacgggcggagcagcgggtcggggatctctgggatgtcgacgggcgcgc 450
           ||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct: 599 acggggactgccatgggcggagcagcgggtcagggatctccgggatgtccacgggcgcgc 540

                     
Query: 451 cggccacctg 460
           ||||||||||
Sbjct: 539 cggccacctg 530
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>gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0056I11,
              complete sequence
          Length = 145796

 Score =  101 bits (51), Expect = 2e-18
 Identities = 77/85 (90%), Gaps = 3/85 (3%)
 Strand = Plus / Minus

                                                                          
Query: 379    gctggggcgcgaacggggactgccacgggcggagcagcgggtcg---gggatctctggga 435
              |||||| ||||||||| | |||||| ||||||||||||||||||   |||||||| ||||
Sbjct: 110429 gctgggccgcgaacggcggctgccatgggcggagcagcgggtcgtcggggatctccggga 110370

                                       
Query: 436    tgtcgacgggcgcgccggccacctg 460
              |||||||||||||||||||||||||
Sbjct: 110369 tgtcgacgggcgcgccggccacctg 110345
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>emb|X57325.1|OSLIP19 Rice lip19 mRNA for basic/leucine zipper protein
          Length = 1324

 Score =  101 bits (51), Expect = 2e-18
 Identities = 77/85 (90%), Gaps = 3/85 (3%)
 Strand = Plus / Minus

                                                                       
Query: 379 gctggggcgcgaacggggactgccacgggcggagcagcgggtcg---gggatctctggga 435
           |||||| ||||||||| | |||||| ||||||||||||||||||   |||||||| ||||
Sbjct: 921 gctgggccgcgaacggcggctgccatgggcggagcagcgggtcgtcggggatctccggga 862

                                    
Query: 436 tgtcgacgggcgcgccggccacctg 460
           |||||||||||||||||||||||||
Sbjct: 861 tgtcgacgggcgcgccggccacctg 837
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  101 bits (51), Expect = 2e-18
 Identities = 77/85 (90%), Gaps = 3/85 (3%)
 Strand = Plus / Minus

                                                                           
Query: 379     gctggggcgcgaacggggactgccacgggcggagcagcgggtcg---gggatctctggga 435
               |||||| ||||||||| | |||||| ||||||||||||||||||   |||||||| ||||
Sbjct: 1658269 gctgggccgcgaacggcggctgccatgggcggagcagcgggtcgtcggggatctccggga 1658210

                                        
Query: 436     tgtcgacgggcgcgccggccacctg 460
               |||||||||||||||||||||||||
Sbjct: 1658209 tgtcgacgggcgcgccggccacctg 1658185
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>dbj|AK105138.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-F02, full
           insert sequence
          Length = 1182

 Score =  101 bits (51), Expect = 2e-18
 Identities = 77/85 (90%), Gaps = 3/85 (3%)
 Strand = Plus / Minus

                                                                       
Query: 379 gctggggcgcgaacggggactgccacgggcggagcagcgggtcg---gggatctctggga 435
           |||||| ||||||||| | |||||| ||||||||||||||||||   |||||||| ||||
Sbjct: 959 gctgggccgcgaacggcggctgccatgggcggagcagcgggtcgtcggggatctccggga 900

                                    
Query: 436 tgtcgacgggcgcgccggccacctg 460
           |||||||||||||||||||||||||
Sbjct: 899 tgtcgacgggcgcgccggccacctg 875
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>dbj|AK104844.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-G08, full
           insert sequence
          Length = 1344

 Score =  101 bits (51), Expect = 2e-18
 Identities = 77/85 (90%), Gaps = 3/85 (3%)
 Strand = Plus / Minus

                                                                       
Query: 379 gctggggcgcgaacggggactgccacgggcggagcagcgggtcg---gggatctctggga 435
           |||||| ||||||||| | |||||| ||||||||||||||||||   |||||||| ||||
Sbjct: 949 gctgggccgcgaacggcggctgccatgggcggagcagcgggtcgtcggggatctccggga 890

                                    
Query: 436 tgtcgacgggcgcgccggccacctg 460
           |||||||||||||||||||||||||
Sbjct: 889 tgtcgacgggcgcgccggccacctg 865
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>dbj|AK065180.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002D17, full
           insert sequence
          Length = 1375

 Score =  101 bits (51), Expect = 2e-18
 Identities = 77/85 (90%), Gaps = 3/85 (3%)
 Strand = Plus / Minus

                                                                       
Query: 379 gctggggcgcgaacggggactgccacgggcggagcagcgggtcg---gggatctctggga 435
           |||||| ||||||||| | |||||| ||||||||||||||||||   |||||||| ||||
Sbjct: 960 gctgggccgcgaacggcggctgccatgggcggagcagcgggtcgtcggggatctccggga 901

                                    
Query: 436 tgtcgacgggcgcgccggccacctg 460
           |||||||||||||||||||||||||
Sbjct: 900 tgtcgacgggcgcgccggccacctg 876
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>dbj|D63955.1| Oryza sativa glip19 gene, complete cds
          Length = 3139

 Score =  101 bits (51), Expect = 2e-18
 Identities = 77/85 (90%), Gaps = 3/85 (3%)
 Strand = Plus / Minus

                                                                        
Query: 379  gctggggcgcgaacggggactgccacgggcggagcagcgggtcg---gggatctctggga 435
            |||||| ||||||||| | |||||| ||||||||||||||||||   |||||||| ||||
Sbjct: 2617 gctgggccgcgaacggcggctgccatgggcggagcagcgggtcgtcggggatctccggga 2558

                                     
Query: 436  tgtcgacgggcgcgccggccacctg 460
            |||||||||||||||||||||||||
Sbjct: 2557 tgtcgacgggcgcgccggccacctg 2533
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>emb|AL512603.26| Human DNA sequence from clone RP11-426A21 on chromosome 10 Contains the
              gene for a novel OTU-like cysteine protease domain
              containing protein (LOC220213) and a CpG island, complete
              sequence
          Length = 182917

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 168    agtactaataatggtctggga 188
              |||||||||||||||||||||
Sbjct: 108417 agtactaataatggtctggga 108437
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>gb|AC098823.3| Homo sapiens BAC clone RP11-420E18 from 2, complete sequence
          Length = 102117

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 220   aaacatgaaataaacaagcta 240
             |||||||||||||||||||||
Sbjct: 69334 aaacatgaaataaacaagcta 69354
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>emb|AL831771.5| Mouse DNA sequence from clone RP23-336F13 on chromosome X, complete
              sequence
          Length = 207974

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 31     tcaagatgttattacagatca 51
              |||||||||||||||||||||
Sbjct: 165204 tcaagatgttattacagatca 165224
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>gb|AY108024.1| Zea mays PCO086173 mRNA sequence
          Length = 469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 398 ctgccacgggcggagcagcgggtcg 422
           |||||| ||||||||||||||||||
Sbjct: 246 ctgccaggggcggagcagcgggtcg 222
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>emb|AL133316.5|CNS01DUR Human chromosome 14 DNA sequence Partial sequence from BAC C-2577N12 of
             library CalTech-D from chromosome 14 of Homo sapiens
             (Human), complete sequence
          Length = 158473

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 207   atcaaacataattaaacatgaaata 231
             ||||||||||||||||||| |||||
Sbjct: 30359 atcaaacataattaaacattaaata 30383
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>emb|AL079307.7|CNS00M8N Human chromosome 14 DNA sequence BAC R-280K24 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 190519

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 217   attaaacatgaaataaacaag 237
             |||||||||||||||||||||
Sbjct: 34838 attaaacatgaaataaacaag 34818
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>emb|AL132716.6|CNS01DTF Human chromosome 14 DNA sequence BAC R-1124A8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 155619

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 207   atcaaacataattaaacatgaaata 231
             ||||||||||||||||||| |||||
Sbjct: 43632 atcaaacataattaaacattaaata 43656
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>ref|NM_187584.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1101

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 cgccggcggtggccagctgg 383
           ||||||||||||||||||||
Sbjct: 754 cgccggcggtggccagctgg 735
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>gb|DQ141104.1| Drosophila ananassae Dscam gene, partial sequence
          Length = 57036

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 97   aacattgttcttatccatat 116
            ||||||||||||||||||||
Sbjct: 4075 aacattgttcttatccatat 4094
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>ref|NM_191140.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1578

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 361 cgccgccggcggtggccagc 380
           ||||||||||||||||||||
Sbjct: 819 cgccgccggcggtggccagc 838
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>gb|U53344.3| Caenorhabditis elegans cosmid T07H6, complete sequence
          Length = 32196

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 192   caataagcaacacgaatcaaacat 215
             |||||||||||||||| |||||||
Sbjct: 16178 caataagcaacacgaagcaaacat 16155
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>gb|BC050393.1| Homo sapiens F-box protein 25, mRNA (cDNA clone MGC:51975
           IMAGE:5769518), complete cds
          Length = 2382

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 441 acgggcgcgccggccacctg 460
           ||||||||||||||||||||
Sbjct: 55  acgggcgcgccggccacctg 36
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>ref|NM_183421.1| Homo sapiens F-box protein 25 (FBXO25), transcript variant 1, mRNA
          Length = 2529

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 441 acgggcgcgccggccacctg 460
           ||||||||||||||||||||
Sbjct: 202 acgggcgcgccggccacctg 183
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>ref|NM_183420.1| Homo sapiens F-box protein 25 (FBXO25), transcript variant 2, mRNA
          Length = 2502

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 441 acgggcgcgccggccacctg 460
           ||||||||||||||||||||
Sbjct: 202 acgggcgcgccggccacctg 183
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>ref|NM_012173.3| Homo sapiens F-box protein 25 (FBXO25), transcript variant 3, mRNA
          Length = 2452

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 441 acgggcgcgccggccacctg 460
           ||||||||||||||||||||
Sbjct: 202 acgggcgcgccggccacctg 183
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>gb|AC166561.2| Spironucleus vortens clone JGIBAWF-9C3, complete sequence
          Length = 35544

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    acatcaataacattgttctt 108
             ||||||||||||||||||||
Sbjct: 21392 acatcaataacattgttctt 21373
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 364     cgccggcggtggccagctgg 383
               ||||||||||||||||||||
Sbjct: 1509297 cgccggcggtggccagctgg 1509316
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>gb|AC083964.3| Homo sapiens chromosome 8, clone RP11-91J19, complete sequence
          Length = 161160

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 441   acgggcgcgccggccacctg 460
             ||||||||||||||||||||
Sbjct: 42850 acgggcgcgccggccacctg 42831
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>gb|AF419858.1| Homo sapiens unknown mRNA
          Length = 1611

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 441 acgggcgcgccggccacctg 460
           ||||||||||||||||||||
Sbjct: 202 acgggcgcgccggccacctg 183
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>gb|AY055110.1| Xanthomonas oryzae pv. oryzae KACC10331 BAC clone 4K15, complete
             sequence
          Length = 100258

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 361   cgccgccggcggtggccagc 380
             ||||||||||||||||||||
Sbjct: 62813 cgccgccggcggtggccagc 62832
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>gb|AC034236.5| Homo sapiens chromosome 5 clone CTD-2287O16, complete sequence
          Length = 162384

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   ttaaacatgaaataaacaag 237
             ||||||||||||||||||||
Sbjct: 32348 ttaaacatgaaataaacaag 32367
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>emb|AL135778.9| Human DNA sequence from clone RP1-119C5 on chromosome 6 Contains the 5'
             end of the BMP6 gene for bone morphogenetic protein 6 and
             a CpG island, complete sequence
          Length = 152786

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   ataattaaacatgaaataaa 233
             ||||||||||||||||||||
Sbjct: 15126 ataattaaacatgaaataaa 15107
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>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome
          Length = 1581384

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 210     aaacataattaaacatgaaataaa 233
               |||||||||||||| |||||||||
Sbjct: 1182150 aaacataattaaacctgaaataaa 1182127
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>emb|BX547996.10| Zebrafish DNA sequence from clone CH211-212H16 in linkage group 1,
              complete sequence
          Length = 213398

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    attaaacatgaaataaacaa 236
              ||||||||||||||||||||
Sbjct: 126506 attaaacatgaaataaacaa 126487
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>gb|AE011634.1| Xanthomonas axonopodis pv. citri str. 306,  section 12 of 469 of the
            complete genome
          Length = 13286

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 361  cgccgccggcggtggccagc 380
            ||||||||||||||||||||
Sbjct: 2851 cgccgccggcggtggccagc 2870
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>emb|CR591359.1| full-length cDNA clone CS0DB003YK09 of Neuroblastoma Cot
           10-normalized of Homo sapiens (human)
          Length = 1412

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 441 acgggcgcgccggccacctg 460
           ||||||||||||||||||||
Sbjct: 36  acgggcgcgccggccacctg 17
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 353     atctggcacgccgccggcgg 372
               ||||||||||||||||||||
Sbjct: 1199345 atctggcacgccgccggcgg 1199364
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>gb|AC104427.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1015F07,
             complete sequence
          Length = 117612

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 364   cgccggcggtggccagctgg 383
             ||||||||||||||||||||
Sbjct: 46470 cgccggcggtggccagctgg 46489
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>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 161     caaaataagtactaataatg 180
               ||||||||||||||||||||
Sbjct: 2262962 caaaataagtactaataatg 2262981
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>gb|AC023110.8| Homo sapiens BAC clone RP11-204H9 from 4, complete sequence
          Length = 165004

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   acaaaataagtactaataat 179
             ||||||||||||||||||||
Sbjct: 92000 acaaaataagtactaataat 92019
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>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome
          Length = 1176248

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 156    aatcacaaaataagtactaataat 179
              ||||||||||| ||||||||||||
Sbjct: 254835 aatcacaaaattagtactaataat 254812
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>ref|NM_076652.3| Caenorhabditis elegans T07H6.5 (T07H6.5) mRNA, complete cds
          Length = 1934

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 192  caataagcaacacgaatcaaacat 215
            |||||||||||||||| |||||||
Sbjct: 1176 caataagcaacacgaagcaaacat 1199
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 151      attacaatcacaaaataagt 170
                ||||||||||||||||||||
Sbjct: 19894847 attacaatcacaaaataagt 19894866
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 364     cgccggcggtggccagctgg 383
               ||||||||||||||||||||
Sbjct: 1509295 cgccggcggtggccagctgg 1509314
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 361      cgccgccggcggtggccagc 380
                ||||||||||||||||||||
Sbjct: 30911997 cgccgccggcggtggccagc 30912016
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>gb|AC025574.19| Homo sapiens 12 BAC RP11-348M3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 60153

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   cacaaaataagtactaataa 178
             ||||||||||||||||||||
Sbjct: 22362 cacaaaataagtactaataa 22343
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>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0638D12
          Length = 161277

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    cgccgccggcggtggccagc 380
              ||||||||||||||||||||
Sbjct: 112364 cgccgccggcggtggccagc 112383
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>gb|AC078820.28| Homo sapiens 12 BAC RP11-114H23 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 164812

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 32   caagatgttattacagatca 51
            ||||||||||||||||||||
Sbjct: 5499 caagatgttattacagatca 5518
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>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0036M16
          Length = 158880

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   attacaatcacaaaataagt 170
             ||||||||||||||||||||
Sbjct: 59497 attacaatcacaaaataagt 59516
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>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0650C03
          Length = 144337

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    attacaatcacaaaataagt 170
              ||||||||||||||||||||
Sbjct: 135006 attacaatcacaaaataagt 135025
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>dbj|AB010000.1| Cavia porcellus gene for platelet activating factor  acetylhydrolase,
            partial cds and 5' upstream region
          Length = 7584

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   tcaccccaaatatagccaca 68
            ||||||||||||||||||||
Sbjct: 7156 tcaccccaaatatagccaca 7175
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>emb|AJ298970.1|ACA298970 Apistogramma caetei mitochondrial partial D-loop, site GC #3
          Length = 365

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 caaccatatccatggtggtc 300
           ||||||||||||||||||||
Sbjct: 74  caaccatatccatggtggtc 93
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>emb|AJ298969.1|ACA298969 Apistogramma caetei mitochondrial partial D-loop, site GC #2
          Length = 365

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 caaccatatccatggtggtc 300
           ||||||||||||||||||||
Sbjct: 74  caaccatatccatggtggtc 93
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>emb|AJ298968.1|ACA298968 Apistogramma caetei mitochondrial partial D-loop, site GC #1
          Length = 365

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 caaccatatccatggtggtc 300
           ||||||||||||||||||||
Sbjct: 74  caaccatatccatggtggtc 93
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 361   cgccgccggcggtggccagc 380
             ||||||||||||||||||||
Sbjct: 39053 cgccgccggcggtggccagc 39034


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,484,264
Number of Sequences: 3902068
Number of extensions: 5484264
Number of successful extensions: 93978
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93626
Number of HSP's gapped (non-prelim): 345
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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